WMU79483 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU79483
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Exportin-2-like protein
Location	Chr5 : 772467 .. 772935 (-)
Sequence length	468

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GATTCTCTTGAATATAGTGTGATTGAACAGTACATTGGCCACATCTGGGCTGTTCTTTTTGGACAGCTCCAAAGTAGACGGACAGTAAAGTTCATCAAGTCACTTTTGATATTCATGTCCCTTTTTCTTGTTAAAAATGGTCACAAAAATCTTTTGGATACCATCAACAGTGTTCAGAACGGCATATTTATCCAAATCTTGAGGCAGTTTTGGATACCTAATCTTAAGCTGATAACTGGGGCCATTGAACTTAAGTTAACTGCAGTTGCTTCAACCAGACTTATCTGTGAGTGTCCAGCACTTTTGGATCCTGCATTTGTTGAAGACTGGGGGAAAATGCTGGATAGCATTGTTACCCTTCTTTCTCGACCTGAACAGGAGAGGGTTGATGAGGAGCCAGAGATGCCCGATATTTCTGAAAATGCTGGTTATAGTGCAAGCTTTGTTCGTCTATACAATGCAGGGAAG

Library


Library category	ESTs
Watermelon normalization and subtraction library	1

Homology

[Close]

BLAST of WMU79483 vs. TAIR10
Match: AT2G46520.1 (AT2G46520.1 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative)

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-54
Identity = 101/156 (64.74%), Postives = 130/156 (83.33%), Query Frame = 1


Query: 1   DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQN 60
           ++L+YSVI  Y+  +W+ LF ++Q+++TVKF KSL+IFMSLFLVK+G   L++T+N+VQ 
Sbjct: 758 ENLDYSVIAPYMKGVWSALFTRVQNKKTVKFQKSLVIFMSLFLVKHGQAYLVETMNTVQP 817

Query: 61  GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL 120
            I   I+  FWIPNLKLI G++E+KLTAVA+TRLICE PALLDP+  + WGKMLDSIVTL
Sbjct: 818 NIITAIVEHFWIPNLKLIMGSMEVKLTAVAATRLICETPALLDPSAAKLWGKMLDSIVTL 877

Query: 121 LSRPEQERVDEEPEMPDISENAGYSASFVRLYNAGK 180
           +SRPEQERV +EPEMP+ISEN GY+A+FV+L+NAGK
Sbjct: 878 VSRPEQERVLDEPEMPEISENVGYTAAFVKLHNAGK 913

Query: 181  240
           
Sbjct: 938  913

Query: 241  300
           
Sbjct: 998  913

Query: 301  360
           
Sbjct: 1058  913

Query: 361  420
           
Sbjct: 1118  913

Query: 421  469
           
Sbjct: 1178  913

[Close]

BLAST of WMU79483 vs. Swiss-Prot
Match: XPO2_ARATH (Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.4e-53
Identity = 101/156 (64.74%), Postives = 130/156 (83.33%), Query Frame = 1


Query: 1   DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQN 60
           ++L+YSVI  Y+  +W+ LF ++Q+++TVKF KSL+IFMSLFLVK+G   L++T+N+VQ 
Sbjct: 758 ENLDYSVIAPYMKGVWSALFTRVQNKKTVKFQKSLVIFMSLFLVKHGQAYLVETMNTVQP 817

Query: 61  GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL 120
            I   I+  FWIPNLKLI G++E+KLTAVA+TRLICE PALLDP+  + WGKMLDSIVTL
Sbjct: 818 NIITAIVEHFWIPNLKLIMGSMEVKLTAVAATRLICETPALLDPSAAKLWGKMLDSIVTL 877

Query: 121 LSRPEQERVDEEPEMPDISENAGYSASFVRLYNAGK 180
           +SRPEQERV +EPEMP+ISEN GY+A+FV+L+NAGK
Sbjct: 878 VSRPEQERVLDEPEMPEISENVGYTAAFVKLHNAGK 913

Query: 181  240
           
Sbjct: 938  913

Query: 241  300
           
Sbjct: 998  913

Query: 301  360
           
Sbjct: 1058  913

Query: 361  420
           
Sbjct: 1118  913

Query: 421  469
           
Sbjct: 1178  913

[Close]

BLAST of WMU79483 vs. Swiss-Prot
Match: XPO2_XENLA (Exportin-2 OS=Xenopus laevis GN=cse1l PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-24
Identity = 55/156 (35.26%), Postives = 92/156 (58.97%), Query Frame = 1


Query: 1   DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQN 60
           + L    IEQY   I+ VLF +LQS +T KF+KS L+F++LF +K G   L +  +S+Q 
Sbjct: 756 EHLPAECIEQYKRQIFIVLFQRLQSSKTTKFVKSFLVFLNLFCIKFGAIALQEMFDSIQP 815

Query: 61  GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL 120
            +F  ++ +  IP ++ ++G IE K+ AV  T+++ ECP ++D  + + W  +L +++ L
Sbjct: 816 KMFGMVVEKIIIPEIQKVSGPIEKKICAVGLTKVLTECPVMMDTEYTKLWTPLLQALIGL 875

Query: 121 LSRPEQERVDEEPEMPDISENAGYSASFVRLYNAGK 180
              PE + + ++    DI +  GY A+F +L  AGK
Sbjct: 876 FELPEDDTIPDDEHFIDIEDTPGYQAAFSQLAFAGK 911

Query: 181  240
           
Sbjct: 936  911

Query: 241  300
           
Sbjct: 996  911

Query: 301  360
           
Sbjct: 1056  911

Query: 361  420
           
Sbjct: 1116  911

Query: 421  469
           
Sbjct: 1176  911

[Close]

BLAST of WMU79483 vs. Swiss-Prot
Match: XPO2_PAGMA (Exportin-2 OS=Pagrus major GN=cse1l PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.6e-24
Identity = 54/149 (36.24%), Postives = 90/149 (60.40%), Query Frame = 1


Query: 22  IEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQNGIFIQIL 81
           I QY   I+ +LF +LQS +T KFIKS L+F++L+ VK G   L +  +S+Q  +F  +L
Sbjct: 763 ITQYRKQIFILLFQRLQSSKTTKFIKSFLVFVNLYSVKYGAIALQEIFDSIQPKMFGMVL 822

Query: 82  RQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTLLSRPEQE 141
            +  IP ++ ++GA+E K+ AV  T+++ ECPA++D  + + W  +L +++ L   PE +
Sbjct: 823 EKIIIPEVQKVSGAVEKKICAVGITKVLTECPAMMDTEYTKLWTPLLQALIGLFELPEDD 882

Query: 142 RVDEEPEMPDISENAGYSASFVRLYNAGK 201
            + ++    DI +  GY  +F +L  AGK
Sbjct: 883 SIPDDEHFIDIEDTPGYQTAFSQLAFAGK 911

Query: 202  261
           
Sbjct: 943  911

Query: 262  321
           
Sbjct: 1003  911

Query: 322  381
           
Sbjct: 1063  911

Query: 382  441
           
Sbjct: 1123  911

Query: 442  469
           
Sbjct: 1183  911

[Close]

BLAST of WMU79483 vs. Swiss-Prot
Match: XPO2_BOVIN (Exportin-2 OS=Bos taurus GN=CSE1L PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-23
Identity = 51/149 (34.23%), Postives = 88/149 (59.06%), Query Frame = 1


Query: 22  IEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQNGIFIQIL 81
           ++QY   I+ +LF +LQ+ +T KFIKS L+F++L+ +K G   L +  + +Q  +F  +L
Sbjct: 763 VDQYRKQIFILLFQRLQNSKTTKFIKSFLVFINLYCIKYGALALQEIFDGIQPKMFGMVL 822

Query: 82  RQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTLLSRPEQE 141
            +  IP ++ ++G +E K+ AV  T+L+ ECP ++D  + + W  +L S++ L   PE +
Sbjct: 823 EKIIIPEIQKVSGNVEKKICAVGITKLLTECPPMMDTEYTKLWTPLLQSLIGLFELPEDD 882

Query: 142 RVDEEPEMPDISENAGYSASFVRLYNAGK 201
            + +E    DI +  GY  +F +L  AGK
Sbjct: 883 TIPDEEHFIDIEDTPGYQTAFSQLAFAGK 911

Query: 202  261
           
Sbjct: 943  911

Query: 262  321
           
Sbjct: 1003  911

Query: 322  381
           
Sbjct: 1063  911

Query: 382  441
           
Sbjct: 1123  911

Query: 442  469
           
Sbjct: 1183  911

[Close]

BLAST of WMU79483 vs. Swiss-Prot
Match: XPO2_HUMAN (Exportin-2 OS=Homo sapiens GN=CSE1L PE=1 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-23
Identity = 51/149 (34.23%), Postives = 88/149 (59.06%), Query Frame = 1


Query: 22  IEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQNGIFIQIL 81
           ++QY   I+ +LF +LQ+ +T KFIKS L+F++L+ +K G   L +  + +Q  +F  +L
Sbjct: 763 VDQYRKQIFILLFQRLQNSKTTKFIKSFLVFINLYCIKYGALALQEIFDGIQPKMFGMVL 822

Query: 82  RQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTLLSRPEQE 141
            +  IP ++ ++G +E K+ AV  T+L+ ECP ++D  + + W  +L S++ L   PE +
Sbjct: 823 EKIIIPEIQKVSGNVEKKICAVGITKLLTECPPMMDTEYTKLWTPLLQSLIGLFELPEDD 882

Query: 142 RVDEEPEMPDISENAGYSASFVRLYNAGK 201
            + +E    DI +  GY  +F +L  AGK
Sbjct: 883 TIPDEEHFIDIEDTPGYQTAFSQLAFAGK 911

Query: 202  261
           
Sbjct: 943  911

Query: 262  321
           
Sbjct: 1003  911

Query: 322  381
           
Sbjct: 1063  911

Query: 382  441
           
Sbjct: 1123  911

Query: 442  469
           
Sbjct: 1183  911

[Close]

BLAST of WMU79483 vs. NCBI nr
Match: gi|449432040|ref|XP_004133808.1| (PREDICTED: exportin-2 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 2.7e-79
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 1


Query: 1   DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQN 60
           DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVK+G KNLLDTINSVQN
Sbjct: 763 DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKHGQKNLLDTINSVQN 822

Query: 61  GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL 120
           GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL
Sbjct: 823 GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL 882

Query: 121 LSRPEQERVDEEPEMPDISENAGYSASFVRLYNAGK 180
           LSRPEQERVDEEPEMPDISEN GYSASFVRLYNAGK
Sbjct: 883 LSRPEQERVDEEPEMPDISENVGYSASFVRLYNAGK 918

Query: 181  240
           
Sbjct: 943  918

Query: 241  300
           
Sbjct: 1003  918

Query: 301  360
           
Sbjct: 1063  918

Query: 361  420
           
Sbjct: 1123  918

Query: 421  469
           
Sbjct: 1183  918

[Close]

BLAST of WMU79483 vs. NCBI nr
Match: gi|659074940|ref|XP_008437877.1| (PREDICTED: exportin-2 [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.4e-78
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 1


Query: 1   DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQN 60
           DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVK+G KNLLDTIN VQN
Sbjct: 763 DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKHGKKNLLDTINCVQN 822

Query: 61  GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL 120
           GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL
Sbjct: 823 GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL 882

Query: 121 LSRPEQERVDEEPEMPDISENAGYSASFVRLYNAGK 180
           LSRPEQERVDEEPEMPDISEN GYSASFVRLYNAGK
Sbjct: 883 LSRPEQERVDEEPEMPDISENVGYSASFVRLYNAGK 918

Query: 181  240
           
Sbjct: 943  918

Query: 241  300
           
Sbjct: 1003  918

Query: 301  360
           
Sbjct: 1063  918

Query: 361  420
           
Sbjct: 1123  918

Query: 421  469
           
Sbjct: 1183  918

[Close]

BLAST of WMU79483 vs. NCBI nr
Match: gi|951072225|ref|XP_014491595.1| (PREDICTED: exportin-2 [Vigna radiata var. radiata])

HSP 1 Score: 238.8 bits (608), Expect = 6.3e-60
Identity = 119/156 (76.28%), Postives = 133/156 (85.26%), Query Frame = 1


Query: 1   DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQN 60
           +SLEY VI+ YI HIWA LF +LQ RRTVK IKSLLIF+SLFL+K+G  NL+DT+N VQ 
Sbjct: 749 ESLEYGVIKPYISHIWAALFRELQRRRTVKLIKSLLIFISLFLIKHGSSNLVDTMNGVQP 808

Query: 61  GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL 120
            IF  IL QFWIPNLKLITGAIELKL AVASTRLICE P LLDPA  E WGKM+DSIVTL
Sbjct: 809 DIFNVILSQFWIPNLKLITGAIELKLAAVASTRLICESPILLDPAAAESWGKMVDSIVTL 868

Query: 121 LSRPEQERVDEEPEMPDISENAGYSASFVRLYNAGK 180
           LSRPEQER DEEP++PDISEN GY+A+FVRLYNAG+
Sbjct: 869 LSRPEQERADEEPDVPDISENVGYTATFVRLYNAGR 904

Query: 181  240
           
Sbjct: 929  904

Query: 241  300
           
Sbjct: 989  904

Query: 301  360
           
Sbjct: 1049  904

Query: 361  420
           
Sbjct: 1109  904

Query: 421  469
           
Sbjct: 1169  904

[Close]

BLAST of WMU79483 vs. NCBI nr
Match: gi|1012181682|ref|XP_015968358.1| (PREDICTED: exportin-2 [Arachis duranensis])

HSP 1 Score: 238.4 bits (607), Expect = 8.3e-60
Identity = 117/156 (75.00%), Postives = 135/156 (86.54%), Query Frame = 1


Query: 1   DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQN 60
           +SLEY+VI+ YI H+WA LF +LQ RRTVK IKSLLIFMSLFL+K+G  NL++T+N VQ 
Sbjct: 763 ESLEYNVIQPYISHVWAALFRELQRRRTVKLIKSLLIFMSLFLIKHGPSNLVETMNLVQP 822

Query: 61  GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL 120
            IF  IL QFWIPNLKLITG+IELKLTAVASTRLICE P LLDPA  E WGKM+DSIVTL
Sbjct: 823 NIFNVILSQFWIPNLKLITGSIELKLTAVASTRLICESPVLLDPAAAESWGKMVDSIVTL 882

Query: 121 LSRPEQERVDEEPEMPDISENAGYSASFVRLYNAGK 180
           LSRPEQ+R +EEP+MPDI+EN GY+A+FVRLYNAGK
Sbjct: 883 LSRPEQDRAEEEPDMPDITENVGYTATFVRLYNAGK 918

Query: 181  240
           
Sbjct: 943  918

Query: 241  300
           
Sbjct: 1003  918

Query: 301  360
           
Sbjct: 1063  918

Query: 361  420
           
Sbjct: 1123  918

Query: 421  469
           
Sbjct: 1183  918

[Close]

BLAST of WMU79483 vs. NCBI nr
Match: gi|1021523735|ref|XP_016205247.1| (PREDICTED: exportin-2 [Arachis ipaensis])

HSP 1 Score: 238.4 bits (607), Expect = 8.3e-60
Identity = 117/156 (75.00%), Postives = 135/156 (86.54%), Query Frame = 1


Query: 1   DSLEYSVIEQYIGHIWAVLFGQLQSRRTVKFIKSLLIFMSLFLVKNGHKNLLDTINSVQN 60
           +SLEY+VI+ YI H+WA LF +LQ RRTVK IKSLLIFMSLFL+K+G  NL++T+N VQ 
Sbjct: 763 ESLEYNVIQPYISHVWAALFRELQRRRTVKLIKSLLIFMSLFLIKHGPSNLVETMNLVQP 822

Query: 61  GIFIQILRQFWIPNLKLITGAIELKLTAVASTRLICECPALLDPAFVEDWGKMLDSIVTL 120
            IF  IL QFWIPNLKLITG+IELKLTAVASTRLICE P LLDPA  E WGKM+DSIVTL
Sbjct: 823 NIFNVILSQFWIPNLKLITGSIELKLTAVASTRLICESPVLLDPAAAESWGKMVDSIVTL 882

Query: 121 LSRPEQERVDEEPEMPDISENAGYSASFVRLYNAGK 180
           LSRPEQ+R +EEP+MPDI+EN GY+A+FVRLYNAGK
Sbjct: 883 LSRPEQDRAEEEPDMPDITENVGYTATFVRLYNAGK 918

Query: 181  240
           
Sbjct: 943  918

Query: 241  300
           
Sbjct: 1003  918

Query: 301  360
           
Sbjct: 1063  918

Query: 361  420
           
Sbjct: 1123  918

Query: 421  469
           
Sbjct: 1183  918

The following BLAST results are available for this feature:

BLAST of WMU79483 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46520.1	1.9e-54	64.74	cellular apoptosis susceptibility protein, putative / importin-alpha...	[more]

BLAST of WMU79483 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XPO2_ARATH	3.4e-53	64.74	Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=2 SV=1	[more]
XPO2_XENLA	1.9e-24	35.26	Exportin-2 OS=Xenopus laevis GN=cse1l PE=2 SV=1	[more]
XPO2_PAGMA	9.6e-24	36.24	Exportin-2 OS=Pagrus major GN=cse1l PE=2 SV=1	[more]
XPO2_BOVIN	3.6e-23	34.23	Exportin-2 OS=Bos taurus GN=CSE1L PE=2 SV=1	[more]
XPO2_HUMAN	3.6e-23	34.23	Exportin-2 OS=Homo sapiens GN=CSE1L PE=1 SV=3	[more]

BLAST of WMU79483 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432040\|ref\|XP_004133808.1\|	2.7e-79	98.08	PREDICTED: exportin-2 [Cucumis sativus]	[more]
gi\|659074940\|ref\|XP_008437877.1\|	1.4e-78	97.44	PREDICTED: exportin-2 [Cucumis melo]	[more]
gi\|951072225\|ref\|XP_014491595.1\|	6.3e-60	76.28	PREDICTED: exportin-2 [Vigna radiata var. radiata]	[more]
gi\|1012181682\|ref\|XP_015968358.1\|	8.3e-60	75.00	PREDICTED: exportin-2 [Arachis duranensis]	[more]
gi\|1021523735\|ref\|XP_016205247.1\|	8.3e-60	75.00	PREDICTED: exportin-2 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR005043	CAS_CSE1_C
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005488	binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021147	Cla021147	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
WMN52D07	WMN52D07	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005043	CAS/CSE, C-terminal	PFAM	PF03378	CAS_CSE1	coord: 2..155 score: 1.1
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 6..125 score: 8.
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 6..137 score: 1.38
None	No IPR available	PANTHER	PTHR10997	IMPORTIN-7, 8, 11	coord: 2..156 score: 1.8
None	No IPR available	PANTHER	PTHR10997:SF8	EXPORTIN-2	coord: 2..156 score: 1.8