WMU78620 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU78620
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 10145602 .. 10146184 (+)
Sequence length	485

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACATATCTATTATAATAATTTGGCAAACAAATATTATATATTATTAAATTGTTTTTGGCAATGAAAGTGAAATAGAGTCATGTTGCAAAGATAGACCAAATCAATACATGAGTGGATGATAATAATACAATGATCAATTATTATCTTTCATCTTAAGATAAGCTTTTGTTATTATGCCTTCGACCTAAACAGCTTTTCGAACTCCGCCGTGACGTTGAAAGAAACTTGAAAAACCTCCGGCGACAATGCCTCCAAAACCGATGTCTTTCCGGCCAATTCTTCCACCAACGGATGTGTATCTGTAATAATGGAAATGCACTCCAAGCCTTCTTCTCCAGCGATTTTCCCCACGGCGAAGTATCTGGGGACTAAAATCAGCTGACCCACTTTCACCTCTACATCAAATTTCTTTGAAAGTCCGACGATCTGAATCTTCCCGGATCCTTTAGCCGCGTAGATCAGTTGATCGGACGGCTCAGCGACGT

Library


Library category	ESTs
watermelon fusarium SSH library	1

Homology

[Close]

BLAST of WMU78620 vs. TAIR10
Match: AT2G28680.1 (AT2G28680.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 94.4 bits (233), Expect = 7.0e-20
Identity = 50/98 (51.02%), Postives = 60/98 (61.22%), Query Frame = -3


Query: 178 QLIYAAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTH 237
           Q+ Y   GSG++QIVG   K   +  VK G L +VPR+F V KIA  +GL   SI+T   
Sbjct: 247 QVTYIVGGSGRVQIVGADGKRVLETHVKAGVLFIVPRFFVVSKIADSDGLSWFSIVTTPD 306

Query: 238 PLVEELAGKTSVLEALSPEVFQVSFNVTAEFEKLFRSK 297
           P+   LAG+TSV +ALSPEV Q +F V  E EK FRSK
Sbjct: 307 PIFTHLAGRTSVWKALSPEVLQAAFKVDPEVEKAFRSK 344

Query: 298  357
           
Sbjct: 367  344

Query: 358  417
           
Sbjct: 427  344

Query: 418  466
           
Sbjct: 487  344

[Close]

BLAST of WMU78620 vs. TAIR10
Match: AT1G07750.1 (AT1G07750.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-18
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = -3


Query: 181 QLIYAAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTH 240
           Q+ Y   GSG++Q+VG   K   +  +K G L +VPR+F V KIA  +G+   SI+T   
Sbjct: 247 QVTYIVGGSGRVQVVGGDGKRVLETHIKAGSLFIVPRFFVVSKIADADGMSWFSIVTTPD 306

Query: 241 PLVEELAGKTSVLEALSPEVFQVSFNVTAEFEKLFRS 300
           P+   LAG TSV ++LSPEV Q +F V  E EK FRS
Sbjct: 307 PIFTHLAGNTSVWKSLSPEVLQAAFKVAPEVEKSFRS 343

Query: 301  360
           
Sbjct: 367  343

Query: 361  420
           
Sbjct: 427  343

Query: 421  466
           
Sbjct: 487  343

[Close]

BLAST of WMU78620 vs. TAIR10
Match: AT1G03890.1 (AT1G03890.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-10
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = -3


Query: 193 LIYAAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHP 252
           ++Y   G  KIQ+V  + +  F+ +V  GQ+I++P+ FAV K AGE G E IS  T+ + 
Sbjct: 341 VLYVTGGQAKIQVVDDNGQSVFNEQVGQGQIIVIPQGFAVSKTAGETGFEWISFKTNDNA 400

Query: 253 LVEELAGKTSVLEALSPEVFQVSFNVTAEFEK 312
            +  L+G+TS L A+  +V + S+ V  E  K
Sbjct: 401 YINTLSGQTSYLRAVPVDVIKASYGVNEEEAK 432

Query: 313  372
           
Sbjct: 461  432

Query: 373  432
           
Sbjct: 521  432

Query: 433  463
           
Sbjct: 581  432

[Close]

BLAST of WMU78620 vs. TAIR10
Match: AT4G28520.1 (AT4G28520.1 cruciferin 3)

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-08
Identity = 30/92 (32.61%), Postives = 52/92 (56.52%), Query Frame = -3


Query: 202 SDQLIYAAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITD 261
           +++++Y   G G+IQ+V  + +   D +V+ GQL+++P+ FA    +     E IS  T+
Sbjct: 401 ANEILYCTGGQGRIQVVNDNGQNVLDQQVQKGQLVVIPQGFAYVVQSHGNKFEWISFKTN 460

Query: 262 THPLVEELAGKTSVLEALSPEVFQVSFNVTAE 321
            + ++  LAG+TS+L AL  EV    F ++ E
Sbjct: 461 ENAMISTLAGRTSLLRALPLEVISNGFQISPE 492

Query: 322  381
           
Sbjct: 521  492

Query: 382  441
           
Sbjct: 581  492

Query: 442  472
           
Sbjct: 641  492

[Close]

BLAST of WMU78620 vs. TAIR10
Match: AT5G44120.3 (AT5G44120.3 RmlC-like cupins superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = -3


Query: 202 SDQLIYAAKGSGKIQIVGLS--KKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITD 261
           ++ ++Y   G  +IQIV  +  + FD +V  GQLI VP+ F+V K A     + +   T+
Sbjct: 350 ANAILYVTDGEAQIQIVNDNGNRVFDGQVSQGQLIAVPQGFSVVKRATSNRFQWVEFKTN 409

Query: 262 THPLVEELAGKTSVLEALSPEVFQVSFNVTAE 321
            +  +  LAG+TSVL  L  EV    F ++ E
Sbjct: 410 ANAQINTLAGRTSVLRGLPLEVITNGFQISPE 441

Query: 322  381
           
Sbjct: 470  441

Query: 382  441
           
Sbjct: 530  441

Query: 442  472
           
Sbjct: 590  441

[Close]

BLAST of WMU78620 vs. Swiss-Prot
Match: 13SB_FAGES (13S globulin basic chain OS=Fagopyrum esculentum PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = -3


Query: 202 IYAAKGSGKIQIVGL--SKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPL 261
           +Y  +G+ K+Q+VG   +K FD EVK GQLI+VP+YFAV K AG +G E ++  T+ + +
Sbjct: 72  LYVTRGNAKVQVVGDEGNKVFDDEVKQGQLIIVPQYFAVIKKAGNQGFEYVAFKTNDNAM 131

Query: 262 VEELAGKTSVLEALSPEVFQVSFNVTAE 321
           +  L G+ S   A+  EV + SF +++E
Sbjct: 132 INPLVGRLSAFRAIPEEVLRSSFQISSE 159

Query: 322  381
           
Sbjct: 192  159

Query: 382  441
           
Sbjct: 252  159

Query: 442  460
           
Sbjct: 312  159

[Close]

BLAST of WMU78620 vs. Swiss-Prot
Match: 13S1_FAGES (13S globulin seed storage protein 1 OS=Fagopyrum esculentum GN=FA02 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = -3


Query: 178 IYAAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPL 237
           +Y  +G G++Q+VG   +  FD  V+ GQ+++VP+ FAV   AG EGLE + +  D + +
Sbjct: 449 LYVTRGEGRVQVVGDEGRSVFDDNVQRGQILVVPQGFAVVLKAGREGLEWVELKNDDNAI 508

Query: 238 VEELAGKTSVLEALSPEVFQVSFNVTAEFEKLFRSK 297
              +AGKTSVL A+  EV   S++++   ++ FR K
Sbjct: 509 TSPIAGKTSVLRAIPVEVLANSYDIST--KEAFRLK 542

Query: 298  357
           
Sbjct: 569  542

Query: 358  417
           
Sbjct: 629  542

Query: 418  460
           
Sbjct: 689  542

[Close]

BLAST of WMU78620 vs. Swiss-Prot
Match: 13S3_FAGES (13S globulin seed storage protein 3 OS=Fagopyrum esculentum GN=FAGAG1 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = -3


Query: 178 IYAAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPL 237
           +Y  +G G++Q+VG   +  FD  V+ GQ+++VP+ FAV   AG EGLE + +  D + +
Sbjct: 419 LYVTRGEGRVQVVGDEGRSVFDDNVQRGQILVVPQGFAVVLKAGREGLEWVELKNDDNAI 478

Query: 238 VEELAGKTSVLEALSPEVFQVSFNVTAEFEKLFRSK 297
              +AGKTSVL A+  EV   S++++   ++ FR K
Sbjct: 479 TSPIAGKTSVLRAIPVEVLANSYDIST--KEAFRLK 512

Query: 298  357
           
Sbjct: 539  512

Query: 358  417
           
Sbjct: 599  512

Query: 418  460
           
Sbjct: 659  512

[Close]

BLAST of WMU78620 vs. Swiss-Prot
Match: 13S2_FAGES (13S globulin seed storage protein 2 OS=Fagopyrum esculentum GN=FA18 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-09
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = -3


Query: 202 IYAAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPL 261
           +Y  +G G++Q+VG   K  FD +V+ GQ+++VP+ FAV   AG EGLE + +    + +
Sbjct: 385 LYVTRGEGRVQVVGDEGKSVFDDKVQRGQILVVPQGFAVVLKAGREGLEWVELKNSGNAI 444

Query: 262 VEELAGKTSVLEALSPEVFQVSFNVTAE 321
              + G+TSVL A+  EV   S++++ +
Sbjct: 445 TSPIGGRTSVLRAIPVEVLANSYDISTK 472

Query: 322  381
           
Sbjct: 505  472

Query: 382  441
           
Sbjct: 565  472

Query: 442  460
           
Sbjct: 625  472

[Close]

BLAST of WMU78620 vs. Swiss-Prot
Match: CRU4_ARATH (12S seed storage protein CRD OS=Arabidopsis thaliana GN=CRD PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-09
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = -3


Query: 193 LIYAAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHP 252
           ++Y   G  KIQ+V  + +  F+ +V  GQ+I++P+ FAV K AGE G E IS  T+ + 
Sbjct: 341 VLYVTGGQAKIQVVDDNGQSVFNEQVGQGQIIVIPQGFAVSKTAGETGFEWISFKTNDNA 400

Query: 253 LVEELAGKTSVLEALSPEVFQVSFNVTAEFEK 312
            +  L+G+TS L A+  +V + S+ V  E  K
Sbjct: 401 YINTLSGQTSYLRAVPVDVIKASYGVNEEEAK 432

Query: 313  372
           
Sbjct: 461  432

Query: 373  432
           
Sbjct: 521  432

Query: 433  463
           
Sbjct: 581  432

[Close]

BLAST of WMU78620 vs. NCBI nr
Match: gi|449467587|ref|XP_004151504.1| (PREDICTED: legumin J [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 2.3e-41
Identity = 88/102 (86.27%), Postives = 93/102 (91.18%), Query Frame = -3


Query: 178 VAEPSDQLIYAAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISII 237
           +AEPSDQLIY  KGSGKIQ+VG S KFD +VK GQLILVPRYFAVGKIAGEEGLECIS+I
Sbjct: 238 IAEPSDQLIYVTKGSGKIQVVGFSSKFDADVKTGQLILVPRYFAVGKIAGEEGLECISMI 297

Query: 238 TDTHPLVEELAGKTSVLEALSPEVFQVSFNVTAEFEKLFRSK 297
             THP+VEELAGKTSVLEALS EVFQVSFNVTAEFEKLFRSK
Sbjct: 298 VATHPMVEELAGKTSVLEALSSEVFQVSFNVTAEFEKLFRSK 339

Query: 298  357
           
Sbjct: 358  339

Query: 358  417
           
Sbjct: 418  339

Query: 418  477
           
Sbjct: 478  339

Query: 478  484
           
Sbjct: 538  339

[Close]

BLAST of WMU78620 vs. NCBI nr
Match: gi|659112129|ref|XP_008456076.1| (PREDICTED: glutelin type-A 2-like [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 2.3e-41
Identity = 87/102 (85.29%), Postives = 94/102 (92.16%), Query Frame = -3


Query: 178 VAEPSDQLIYAAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISII 237
           +AEPSDQLIY  KGSGKIQ+VG S KFD +VK+GQLILVPRYFAVGK+AGEEGLECIS+I
Sbjct: 238 IAEPSDQLIYVTKGSGKIQVVGFSSKFDADVKIGQLILVPRYFAVGKMAGEEGLECISMI 297

Query: 238 TDTHPLVEELAGKTSVLEALSPEVFQVSFNVTAEFEKLFRSK 297
             THP+VEELAGKTSVLEALS EVFQVSFNVTAEFEKLFRSK
Sbjct: 298 VATHPMVEELAGKTSVLEALSSEVFQVSFNVTAEFEKLFRSK 339

Query: 298  357
           
Sbjct: 358  339

Query: 358  417
           
Sbjct: 418  339

Query: 418  477
           
Sbjct: 478  339

Query: 478  484
           
Sbjct: 538  339

[Close]

BLAST of WMU78620 vs. NCBI nr
Match: gi|700202448|gb|KGN57581.1| (hypothetical protein Csa_3G218170 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 2.9e-31
Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = -3


Query: 178 VAEPSDQLIYAAKGSGKIQIVGLSKKF--DVEVKVGQLILVPRYFAVGKIAGEEGLECIS 237
           VA+PS QLIY A GSG++QI     ++  D EVK GQL+LVP+YFAVGK+AGEEGLEC +
Sbjct: 240 VADPSVQLIYVASGSGRVQIAETFMRYQIDAEVKAGQLVLVPKYFAVGKMAGEEGLECFT 299

Query: 238 IITDTHPLVEELAGKTSVLEALSPEVFQVSFNVTAEFEKLFRSK 297
           IIT THPL+EEL GKTS+  A SP+VF+ SFN+TA FEKLFRSK
Sbjct: 300 IITTTHPLLEELGGKTSIFGAFSPQVFEASFNLTAHFEKLFRSK 343

Query: 298  357
           
Sbjct: 360  343

Query: 358  417
           
Sbjct: 420  343

Query: 418  477
           
Sbjct: 480  343

Query: 478  484
           
Sbjct: 540  343

[Close]

BLAST of WMU78620 vs. NCBI nr
Match: gi|659112131|ref|XP_008456077.1| (PREDICTED: glutelin type-B 2-like [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 72/104 (69.23%), Postives = 83/104 (79.81%), Query Frame = -3


Query: 178 VAEPSDQLIYAAKGSGKIQIVG--LSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECIS 237
           VA+PS QLIY A GSG+IQI    + K+ D EVK GQLILVP+YFAVGK+AGEEGLEC +
Sbjct: 240 VADPSVQLIYVASGSGRIQIAETFMRKQIDAEVKAGQLILVPKYFAVGKMAGEEGLECFT 299

Query: 238 IITDTHPLVEELAGKTSVLEALSPEVFQVSFNVTAEFEKLFRSK 297
           IIT THPL+EEL GK+S+  A SP+VFQ SFNVTA FEKL  SK
Sbjct: 300 IITTTHPLLEELGGKSSIFGAFSPQVFQASFNVTAHFEKLLISK 343

Query: 298  357
           
Sbjct: 360  343

Query: 358  417
           
Sbjct: 420  343

Query: 418  477
           
Sbjct: 480  343

Query: 478  484
           
Sbjct: 540  343

[Close]

BLAST of WMU78620 vs. NCBI nr
Match: gi|502140358|ref|XP_004504184.1| (PREDICTED: 11S globulin seed storage protein 2-like [Cicer arietinum])

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = -3


Query: 175 PSDQLIYAAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIIT 234
           P  QLIY A+G GKI+IVGL+ K   D +VKVG LI+VPR+F V KIAGEEG+E  SI+T
Sbjct: 246 PGIQLIYIARGGGKIEIVGLNGKRVLDAQVKVGHLIVVPRFFVVAKIAGEEGMETYSIVT 305

Query: 235 DTHPLVEELAGKTSVLEALSPEVFQVSFNVTAEFEKLFRSKA 294
            T PL EELAGK SV   LSP V +VSFNV +EF+KLF SKA
Sbjct: 306 TTKPLFEELAGKKSVWGVLSPTVQEVSFNVNSEFQKLFISKA 347

Query: 295  354
           
Sbjct: 366  347

Query: 355  414
           
Sbjct: 426  347

Query: 415  474
           
Sbjct: 486  347

The following BLAST results are available for this feature:

BLAST of WMU78620 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28680.1	7.0e-20	51.02	RmlC-like cupins superfamily protein	[more]
AT1G07750.1	5.0e-18	46.39	RmlC-like cupins superfamily protein	[more]
AT1G03890.1	2.3e-10	38.04	RmlC-like cupins superfamily protein	[more]
AT4G28520.1	8.1e-08	32.61	cruciferin 3	[more]
AT5G44120.3	1.4e-07	34.78	RmlC-like cupins superfamily protein	[more]

BLAST of WMU78620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
13SB_FAGES	1.0e-12	42.05	13S globulin basic chain OS=Fagopyrum esculentum PE=1 SV=1	[more]
13S1_FAGES	1.6e-10	38.54	13S globulin seed storage protein 1 OS=Fagopyrum esculentum GN=FA02 PE=2 SV=1	[more]
13S3_FAGES	1.6e-10	38.54	13S globulin seed storage protein 3 OS=Fagopyrum esculentum GN=FAGAG1 PE=1 SV=1	[more]
13S2_FAGES	3.1e-09	36.36	13S globulin seed storage protein 2 OS=Fagopyrum esculentum GN=FA18 PE=2 SV=1	[more]
CRU4_ARATH	4.0e-09	38.04	12S seed storage protein CRD OS=Arabidopsis thaliana GN=CRD PE=1 SV=1	[more]

BLAST of WMU78620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449467587\|ref\|XP_004151504.1\|	2.3e-41	86.27	PREDICTED: legumin J [Cucumis sativus]	[more]
gi\|659112129\|ref\|XP_008456076.1\|	2.3e-41	85.29	PREDICTED: glutelin type-A 2-like [Cucumis melo]	[more]
gi\|700202448\|gb\|KGN57581.1\|	2.9e-31	67.31	hypothetical protein Csa_3G218170 [Cucumis sativus]	[more]
gi\|659112131\|ref\|XP_008456077.1\|	8.3e-31	69.23	PREDICTED: glutelin type-B 2-like [Cucumis melo]	[more]
gi\|502140358\|ref\|XP_004504184.1\|	1.8e-25	64.71	PREDICTED: 11S globulin seed storage protein 2-like [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006044	11S_seedstore_pln
IPR006045	Cupin_1
IPR011051	RmlC_Cupin_sf
IPR014710	RmlC-like_jellyroll

Vocabulary: **Molecular Function**
Term	Definition
GO:0045735	nutrient reservoir activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0045735	nutrient reservoir activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla013035	Cla013035	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
SSH0001846	SSH0001846	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006044	11-S seed storage protein, plant	PRINTS	PR00439	11SGLOBULIN	coord: 53..71 score: 1.2E-8coord: 75..92 score: 1.2E-8coord: 35..50 score: 1.
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 6..96 score: 4.0
IPR011051	RmlC-like cupin domain	unknown	SSF51182	RmlC-like cupins	coord: 6..100 score: 5.14
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 6..98 score: 3.7
None	No IPR available	PANTHER	PTHR31189	FAMILY NOT NAMED	coord: 8..103 score: 1.2
None	No IPR available	PANTHER	PTHR31189:SF0	SUBFAMILY NOT NAMED	coord: 8..103 score: 1.2