WMU76797 (transcribed_cluster) Watermelon (97103) v1

NameWMU76797
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTransducin family protein/WD-40 repeat protein
LocationChr5 : 749583 .. 749964 (+)
Sequence length381
The following sequences are available for this feature:

transcribed_cluster sequence

AATTGGGACTCTATGAGTAATGACAACTCATTCATTTCATCCTCCACGAAGTCTGAACTCAGCAGCTTTATTGAGTCTCTTGAGAATTTCTATGAATTAGCAGGGCTAACCAGCATGGAGAAGACACAAACTCTAGCAATTGTGGATCTTCTGGGTGAAATCAGTAATAAATCTTCTGCATCTGCTTATGAAAGTCTTGACGAGCCCGGGAGAAGGTACTCTGCAATAATGTTTTTGTAACTTCTCAATACATAAGATTTGGAAGTTGCTAGACCTTGCATCTCGATTAGTCTGTTGTGTTAAAAGGCTTGGAGAAAACCTTTGCCTCATTATCATTATCTGTCTTCTCTGTTAAATGCCTCGTTGTCACTAAGTCCTGCA
BLAST of WMU76797 vs. TAIR10
Match: AT2G46560.1 (AT2G46560.1 transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 28/55 (50.91%), Postives = 32/55 (58.18%), Query Frame = 1

Query: 55   ELSSFIESLENFYELAGLTSMEKTQTLAIVDLLGEISNKSSASAYESLDEPGRRY 114
            E S F E L+   +   ++ +E  Q  AIVDLL EISN  S S Y SLDEPGRR+
Sbjct: 1121 EFSGFCEQLKKLSDEGNISRIEILQYFAIVDLLCEISNPHSTSVYASLDEPGRRF 1175

Query: 115  174
            
Sbjct: 1181 1175

Query: 175  220
            
Sbjct: 1241 1175

BLAST of WMU76797 vs. NCBI nr
Match: gi|778676845|ref|XP_011650671.1| (PREDICTED: uncharacterized protein LOC101204824 isoform X2 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 53/73 (72.60%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 1    NWDXXXXXXXXXXXXXXXELSSFIESLENFYELAGLTSMEKTQTLAIVDLLGEISNKSSA 60
            NWD               E SSFIE LE  YELAGLTSMEKTQTLAIVDLLGEISNKSS+
Sbjct: 1026 NWDSISNDNSFVPSSTKSEFSSFIEPLEKLYELAGLTSMEKTQTLAIVDLLGEISNKSSS 1085

Query: 61   SAYESLDEPGRRY 120
            SAYESLDEPGRRY
Sbjct: 1086 SAYESLDEPGRRY 1098

Query: 121  180
            
Sbjct: 1146 1098

Query: 181  220
            
Sbjct: 1206 1098

BLAST of WMU76797 vs. NCBI nr
Match: gi|449433024|ref|XP_004134298.1| (PREDICTED: uncharacterized protein LOC101204824 isoform X1 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 53/73 (72.60%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 1    NWDXXXXXXXXXXXXXXXELSSFIESLENFYELAGLTSMEKTQTLAIVDLLGEISNKSSA 60
            NWD               E SSFIE LE  YELAGLTSMEKTQTLAIVDLLGEISNKSS+
Sbjct: 1079 NWDSISNDNSFVPSSTKSEFSSFIEPLEKLYELAGLTSMEKTQTLAIVDLLGEISNKSSS 1138

Query: 61   SAYESLDEPGRRY 120
            SAYESLDEPGRRY
Sbjct: 1139 SAYESLDEPGRRY 1151

Query: 121  180
            
Sbjct: 1199 1151

Query: 181  220
            
Sbjct: 1259 1151

BLAST of WMU76797 vs. NCBI nr
Match: gi|659074931|ref|XP_008437873.1| (PREDICTED: uncharacterized protein LOC103483174 isoform X2 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-18
Identity = 52/73 (71.23%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 1    NWDXXXXXXXXXXXXXXXELSSFIESLENFYELAGLTSMEKTQTLAIVDLLGEISNKSSA 60
            NWD               E SSF+E LE  YELAGLTSMEKTQTLAIVDLLGEISNKSS+
Sbjct: 1026 NWDSISNDNSFIPSSTKSEFSSFVEPLEKLYELAGLTSMEKTQTLAIVDLLGEISNKSSS 1085

Query: 61   SAYESLDEPGRRY 120
            SAYESLDEPGRRY
Sbjct: 1086 SAYESLDEPGRRY 1098

Query: 121  180
            
Sbjct: 1146 1098

Query: 181  220
            
Sbjct: 1206 1098

BLAST of WMU76797 vs. NCBI nr
Match: gi|659074929|ref|XP_008437872.1| (PREDICTED: uncharacterized protein LOC103483174 isoform X1 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-18
Identity = 52/73 (71.23%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 1    NWDXXXXXXXXXXXXXXXELSSFIESLENFYELAGLTSMEKTQTLAIVDLLGEISNKSSA 60
            NWD               E SSF+E LE  YELAGLTSMEKTQTLAIVDLLGEISNKSS+
Sbjct: 1079 NWDSISNDNSFIPSSTKSEFSSFVEPLEKLYELAGLTSMEKTQTLAIVDLLGEISNKSSS 1138

Query: 61   SAYESLDEPGRRY 120
            SAYESLDEPGRRY
Sbjct: 1139 SAYESLDEPGRRY 1151

Query: 121  180
            
Sbjct: 1199 1151

Query: 181  220
            
Sbjct: 1259 1151

BLAST of WMU76797 vs. NCBI nr
Match: gi|731422029|ref|XP_002264136.3| (PREDICTED: uncharacterized protein LOC100255258 isoform X1 [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 8.9e-12
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1

Query: 55   ELSSFIESLENFYELAGLTSMEKTQTLAIVDLLGEISNKSSASAYESLDEPGRRY 114
            ELSSF+E LE FYELA +TS EK Q LAI+DLL E++N  SASAY SLDEPG+R+
Sbjct: 1143 ELSSFVEPLEKFYELAAITSSEKMQILAIIDLLNEVNNPHSASAYGSLDEPGQRF 1197

Query: 115  174
            
Sbjct: 1203 1197

Query: 175  220
            
Sbjct: 1263 1197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT2G46560.11.1e-0750.91 transducin family protein / WD-40 repeat family protein[more]
Match NameE-valueIdentityDescription
gi|778676845|ref|XP_011650671.1|1.3e-1872.60PREDICTED: uncharacterized protein LOC101204824 isoform X2 [Cucumis sativus][more]
gi|449433024|ref|XP_004134298.1|1.3e-1872.60PREDICTED: uncharacterized protein LOC101204824 isoform X1 [Cucumis sativus][more]
gi|659074931|ref|XP_008437873.1|1.7e-1871.23PREDICTED: uncharacterized protein LOC103483174 isoform X2 [Cucumis melo][more]
gi|659074929|ref|XP_008437872.1|1.7e-1871.23PREDICTED: uncharacterized protein LOC103483174 isoform X1 [Cucumis melo][more]
gi|731422029|ref|XP_002264136.3|8.9e-1269.09PREDICTED: uncharacterized protein LOC100255258 isoform X1 [Vitis vinifera][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021144Cla021144gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S4_0108927S4_0108927EST