WMU75754 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU75754
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPentatricopeptide repeat-containing family protein
LocationChr1 : 17215175 .. 17215663 (-)
Sequence length486
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CAGTCTTGAAAACTCCTCCTGGATTAACCATTAGGATTAAGAAGAACATTAGAATATGTGGTGACTGCCATTCTGCATTCAAGTTTGCTTCAAAAGTCTTGGAAAGAGAAATCATCGTAAGAGACACCAATAGACTTCACCATTTCCTTCATGGCTTGTGTTCTTGTAGGGACTATTGGTAGCCTATTACTTCTTCATTACTAAGATTTCGCCAGTAGATTTGAGATGTTCAGATATAGCTTTCAATGGCTTGAGTTCAAACTTACCAAGAAGAAGCCCAATACTTAAATGTTGGTTGAAGGAAGGTTCTCTTATCTAACTTCAATCTTTTGAACTCACATGTTTATGATTTTTCTAATGGTAGATGCTACAAGAATACAATAGAATAAAGTTCAAATAAGCAAACATATCAACAATTGATTGGTGATGATAAATTAAGAACCAAGCATTTATACTACATGGGGATTGTATAGCTGGTTCATTTTG
Homology
[Close]
BLAST of WMU75754 vs. TAIR10
Match: AT1G56690.1 (AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 94.0 bits (232), Expect = 9.2e-20
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           +LK P G+ IR+ KN+R+CGDCH+A K  SKV EREII+RD NR HHF +G CSCRDYW
Sbjct: 646 LLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704

Query: 63   122
           
Sbjct: 706  704

Query: 123  180
           
Sbjct: 766  704

[Close]
BLAST of WMU75754 vs. TAIR10
Match: AT4G33990.1 (AT4G33990.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-19
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           ++ TP   TIRI KN+R+CGDCHS  KF SK+ EREIIVRD+NR HHF +G+CSC DYW
Sbjct: 765 LIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823

Query: 63   122
           
Sbjct: 825  823

Query: 123  180
           
Sbjct: 885  823

[Close]
BLAST of WMU75754 vs. TAIR10
Match: AT3G23330.1 (AT3G23330.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 7.8e-19
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           ++ T PG TIR+ KNIRIC DCH A KF SK+ EREIIVRD +R HHF  G CSC DYW
Sbjct: 657 IINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715

Query: 63   122
           
Sbjct: 717  715

Query: 123  180
           
Sbjct: 777  715

[Close]
BLAST of WMU75754 vs. TAIR10
Match: AT2G22070.1 (AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-18
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           ++ TP   T+RI KN+R+C DCH+A KF SK++ REIIVRDT R HHF  G CSCRDYW
Sbjct: 728 LISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786

Query: 63   122
           
Sbjct: 788  786

Query: 123  180
           
Sbjct: 848  786

[Close]
BLAST of WMU75754 vs. TAIR10
Match: AT5G06540.1 (AT5G06540.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-18
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           ++KT PG TIRI KN+R+C DCH+  K  S+V  RE+IVRD NR HHF +G+CSCRDYW
Sbjct: 564 MMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622

Query: 63   122
           
Sbjct: 624  622

Query: 123  180
           
Sbjct: 684  622

[Close]
BLAST of WMU75754 vs. Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.8e-21
Identity = 44/59 (74.58%), Postives = 47/59 (79.66%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           +L TPPG TI IKKNIR+CGDCH+A K ASKV+ REIIVRDTNR HHF  G CSC+DYW
Sbjct: 575 LLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633

Query: 63   122
           
Sbjct: 635  633

Query: 123  180
           
Sbjct: 695  633

[Close]
BLAST of WMU75754 vs. Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           +LK P G+ IR+ KN+R+CGDCH+A K  SKV EREII+RD NR HHF +G CSCRDYW
Sbjct: 646 LLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704

Query: 63   122
           
Sbjct: 706  704

Query: 123  180
           
Sbjct: 766  704

[Close]
BLAST of WMU75754 vs. Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-18
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           ++ TP   TIRI KN+R+CGDCHS  KF SK+ EREIIVRD+NR HHF +G+CSC DYW
Sbjct: 765 LIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823

Query: 63   122
           
Sbjct: 825  823

Query: 123  180
           
Sbjct: 885  823

[Close]
BLAST of WMU75754 vs. Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           ++ T PG TIR+ KNIRIC DCH A KF SK+ EREIIVRD +R HHF  G CSC DYW
Sbjct: 657 IINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715

Query: 63   122
           
Sbjct: 717  715

Query: 123  180
           
Sbjct: 777  715

[Close]
BLAST of WMU75754 vs. Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-17
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           ++ TP   T+RI KN+R+C DCH+A KF SK++ REIIVRDT R HHF  G CSCRDYW
Sbjct: 728 LISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786

Query: 63   122
           
Sbjct: 788  786

Query: 123  180
           
Sbjct: 848  786

[Close]
BLAST of WMU75754 vs. NCBI nr
Match: gi|659128608|ref|XP_008464284.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 7.3e-27
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVL REIIVRDTNR HHFLHG+CSCRDYW
Sbjct: 622 VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLGREIIVRDTNRFHHFLHGMCSCRDYW 680

Query: 63   122
           
Sbjct: 682  680

Query: 123  180
           
Sbjct: 742  680

[Close]
BLAST of WMU75754 vs. NCBI nr
Match: gi|659128610|ref|XP_008464285.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 7.3e-27
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVL REIIVRDTNR HHFLHG+CSCRDYW
Sbjct: 586 VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLGREIIVRDTNRFHHFLHGMCSCRDYW 644

Query: 63   122
           
Sbjct: 646  644

Query: 123  180
           
Sbjct: 706  644

[Close]
BLAST of WMU75754 vs. NCBI nr
Match: gi|449443492|ref|XP_004139511.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-26
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           VLKTPPGLTIRIKKNIRICGDCHSAFKFAS+VL REIIVRDTNR HHFLHG+CSCRDYW
Sbjct: 620 VLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678

Query: 63   122
           
Sbjct: 680  678

Query: 123  180
           
Sbjct: 740  678

[Close]
BLAST of WMU75754 vs. NCBI nr
Match: gi|224089505|ref|XP_002308737.1| (pentatricopeptide repeat-containing family protein [Populus trichocarpa])

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           +L TPPG TIRIKKNIRICGDCHSAFKF SK++EREIIVRDTNR HHF  G CSC DYW
Sbjct: 532 LLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590

Query: 63   122
           
Sbjct: 592  590

Query: 123  180
           
Sbjct: 652  590

[Close]
BLAST of WMU75754 vs. NCBI nr
Match: gi|743923367|ref|XP_011005774.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Populus euphratica])

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 3 

Query: 3   VLKTPPGLTIRIKKNIRICGDCHSAFKFASKVLEREIIVRDTNRLHHFLHGLCSCRDYW 62
           +L TPPG TIRIKKNIRICGDCHSAFKF SK++EREIIVRDTNR HHF  G CSC DYW
Sbjct: 532 LLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590

Query: 63   122
           
Sbjct: 592  590

Query: 123  180
           
Sbjct: 652  590

The following BLAST results are available for this feature:
BLAST of WMU75754 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G56690.19.2e-2066.10 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G33990.12.0e-1966.10 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G23330.17.8e-1966.10 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G22070.11.3e-1862.71 pentatricopeptide (PPR) repeat-containing protein[more]
AT5G06540.12.3e-1862.71 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of WMU75754 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP252_ARATH7.8e-2174.58Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop... [more]
PPR84_ARATH1.6e-1866.10Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidop... [more]
PP348_ARATH3.6e-1866.10Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN... [more]
PP251_ARATH1.4e-1766.10Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th... [more]
PP168_ARATH2.4e-1762.71Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN... [more]
BLAST of WMU75754 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128608|ref|XP_008464284.1|7.3e-2794.92PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial ... [more]
gi|659128610|ref|XP_008464285.1|7.3e-2794.92PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial ... [more]
gi|449443492|ref|XP_004139511.1|1.6e-2693.22PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-... [more]
gi|224089505|ref|XP_002308737.1|2.4e-2281.36pentatricopeptide repeat-containing family protein [Populus trichocarpa][more]
gi|743923367|ref|XP_011005774.1|2.4e-2281.36PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-... [more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla011015Cla011015gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S4_0055400S4_0055400EST