WMU73889 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU73889
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ankyrin repeat-containing protein
Location	Chr5 : 9923151 .. 9923604 (-)
Sequence length	451

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAAACAAATCTTTCTTGGCTTTTGCAGCTACAGATGCATTAGCATTGATCAGTTCGTCTGTTTCAGTAATGATGTTTTTGGAAATACTCACTTCTCGTTACGCAGAAGACGATTTTCTCAAGGCATTGCCTACTAGATTGATTATCGGGCTCGTTTCGTTGTTTATCTCTATATCTTCCATGGTGGCAGCCTTTGGTGCATCACTTCACCTGGTTCTTGTTCATCAAGTGAAATGGGTGTGGATTCCATTGATATTATTTGCCTTCATTCCTGTTATCTTATTTGCTATGTCACAGTTTCCTCTCCTGGTTCAATGATCTCTTTCACATATGGGCGCAGCATTTTTGGTTTGCAAAGTAAGGAAGTAATTTCACTAGCGGGGTTTATGTACTACTGGTTGTCCCTTTTACCAATAGAATCTTCCATGAATAGAATGGAACAACGTAACATA

Library


Library category	ESTs
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU73889 vs. TAIR10
Match: AT5G04700.1 (AT5G04700.1 Ankyrin repeat family protein)

HSP 1 Score: 87.8 bits (216), Expect = 6.1e-18
Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 3


Query: 51  SSSVSVMMFLEILTSRYAEDDFLKALPTRLIIGLVSLFISISSMVAAFGASLHLVLVHQV 110
           +S  SV++FL ILT+RY+ DDFL  LPT++I GL  LF+SI++M+ AF ++L  ++  + 
Sbjct: 563 ASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEG 622

Query: 111 KWVWIPLILFAFIPVILFAMSQFPLLVQ*SLSHMG 170
           KW+  P ILFA +P +LF + Q+PLL +   S  G
Sbjct: 623 KWIVAPTILFACLPALLFVLLQYPLLKEMIFSTYG 657

Query: 171  230
           
Sbjct: 683  657

Query: 231  290
           
Sbjct: 743  657

Query: 291  336
           
Sbjct: 803  657

[Close]

BLAST of WMU73889 vs. TAIR10
Match: AT3G18670.1 (AT3G18670.1 Ankyrin repeat family protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16
Identity = 37/88 (42.05%), Postives = 63/88 (71.59%), Query Frame = 3


Query: 51  SSSVSVMMFLEILTSRYAEDDFLKALPTRLIIGLVSLFISISSMVAAFGASLHLVLVHQV 110
           +S +S++MFL IL SRY E+DFL++LPT+LI+GL++LF+S+++M+  F  +L  ++  ++
Sbjct: 491 TSCMSLLMFLGILKSRYREEDFLRSLPTKLIVGLLALFLSMATMIVTFVVTLMTLVGEKI 550

Query: 111 KWVWIPLILFAFIPVILFAMSQFPLLVQ 170
            WV    +  A IP+ +F + QFP+L++
Sbjct: 551 SWVSAQFMFLAVIPLGMFVVLQFPVLLE 578

Query: 171  230
           
Sbjct: 611  578

Query: 231  290
           
Sbjct: 671  578

Query: 291  315
           
Sbjct: 731  578

[Close]

BLAST of WMU73889 vs. TAIR10
Match: AT5G04680.1 (AT5G04680.1 Ankyrin repeat family protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 3


Query: 51  SSSVSVMMFLEILTSRYAEDDFLKALPTRLIIGLVSLFISISSMVAAFGASLHLVLVHQV 110
           ++  +V +FL ILT+RY+ DDFL ALPT++I GL  LF+SI++M+ AF   L + ++++ 
Sbjct: 588 AACTAVPIFLGILTARYSFDDFLVALPTKMITGLSILFVSIAAMLIAFSLVL-ITMMNKG 647

Query: 111 KWVWIPLILFAFIPVILFAMSQFPLLVQ*SLSHMG 170
           KW+  P IL A +P +LF + Q+PLL +   S  G
Sbjct: 648 KWIVAPTILCACLPALLFVLLQYPLLKEMIFSTYG 681

Query: 171  230
           
Sbjct: 708  681

Query: 231  290
           
Sbjct: 768  681

Query: 291  336
           
Sbjct: 828  681

[Close]

BLAST of WMU73889 vs. TAIR10
Match: AT5G04690.1 (AT5G04690.1 Ankyrin repeat family protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 3


Query: 51  SSSVSVMMFLEILTSRYAEDDFLKALPTRLIIGLVSLFISISSMVAAFGASLHLVLVHQV 110
           ++  SV++FL ILT+RYA DDFL +LP  +I GL +LF+SI++M+ AF ++L  +     
Sbjct: 521 AACTSVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTIF--ND 580

Query: 111 KWVWIPLILFAFIPVILFAMSQFPLLVQ*SLSHMG 170
            W+  P I FA  P +LF M Q+PLL +   S  G
Sbjct: 581 PWIVAPTIFFACFPALLFVMIQYPLLKELIFSTYG 613

Query: 171  230
           
Sbjct: 641  613

Query: 231  290
           
Sbjct: 701  613

Query: 291  336
           
Sbjct: 761  613

[Close]

BLAST of WMU73889 vs. TAIR10
Match: AT5G35810.1 (AT5G35810.1 Ankyrin repeat family protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-14
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 3


Query: 48  ISSSVSVMMFLEILTSRYAEDDFLKALPTRLIIGLVSLFISISSMVAAFGASLHLVLVHQ 107
           +SS  S+M+FL ILTSRYAE  F   LPT+L++GL++LF+SI SMV AF A+L L+   +
Sbjct: 238 LSSVTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQE 297

Query: 108 VKWVWIPLILFAFIPVILFAMSQFPL 167
            KW  I L+  A    + F +  F L
Sbjct: 298 PKWSLILLVYVASATALSFVVLHFQL 323

Query: 168  227
           
Sbjct: 358  323

Query: 228  287
           
Sbjct: 418  323

Query: 288  306
           
Sbjct: 478  323

[Close]

BLAST of WMU73889 vs. NCBI nr
Match: gi|147815431|emb|CAN72586.1| (hypothetical protein VITISV_001920 [Vitis vinifera])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 56/88 (63.64%), Postives = 73/88 (82.95%), Query Frame = 3


Query: 51  SSSVSVMMFLEILTSRYAEDDFLKALPTRLIIGLVSLFISISSMVAAFGASLHLVLVHQV 110
           SSS SV+MFL ILTSRYAE+DFLK+LP +LIIGL SLF S+ SM+ AFG+++++VL H++
Sbjct: 211 SSSTSVLMFLGILTSRYAEEDFLKSLPNKLIIGLSSLFFSLLSMMVAFGSAIYVVLSHRI 270

Query: 111 KWVWIPLILFAFIPVILFAMSQFPLLVQ 170
            WV IPLI+ A IP+  FA+ QFPLLV+
Sbjct: 271 AWVSIPLIVLACIPITFFALLQFPLLVE 298

Query: 171  230
           
Sbjct: 331  298

Query: 231  290
           
Sbjct: 391  298

Query: 291  315
           
Sbjct: 451  298

[Close]

BLAST of WMU73889 vs. NCBI nr
Match: gi|643737877|gb|KDP43902.1| (hypothetical protein JCGZ_20912 [Jatropha curcas])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 57/95 (60.00%), Postives = 74/95 (77.89%), Query Frame = 3


Query: 51  SSSVSVMMFLEILTSRYAEDDFLKALPTRLIIGLVSLFISISSMVAAFGASLHLVLVHQV 110
           SSS S++MFL +LTSRYAE+DFLKALP RL IGL++LF SI+SM+AAF  + HLVL H+V
Sbjct: 455 SSSTSLLMFLGMLTSRYAEEDFLKALPMRLSIGLITLFFSIASMLAAFSGAFHLVLFHKV 514

Query: 111 KWVWIPLILFAFIPVILFAMSQFPLLVQ*SLSHMG 170
           +W+ +P+   A +PV LFA+ QFPLLV+   S  G
Sbjct: 515 QWIAVPIGAVACVPVTLFALLQFPLLVEIVYSTFG 549

Query: 171  230
           
Sbjct: 575  549

Query: 231  290
           
Sbjct: 635  549

Query: 291  336
           
Sbjct: 695  549

[Close]

BLAST of WMU73889 vs. NCBI nr
Match: gi|296088579|emb|CBI37570.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 56/88 (63.64%), Postives = 73/88 (82.95%), Query Frame = 3


Query: 51  SSSVSVMMFLEILTSRYAEDDFLKALPTRLIIGLVSLFISISSMVAAFGASLHLVLVHQV 110
           SSS SV+MFL ILTSRYAE+DFLK+LP +LIIGL SLF S+ SM+ AFG+++++VL H++
Sbjct: 269 SSSTSVLMFLGILTSRYAEEDFLKSLPNKLIIGLSSLFFSLLSMMVAFGSAIYVVLSHRI 328

Query: 111 KWVWIPLILFAFIPVILFAMSQFPLLVQ 170
            WV IPLI+ A IP+  FA+ QFPLLV+
Sbjct: 329 AWVSIPLIVLACIPITFFALLQFPLLVE 356

Query: 171  230
           
Sbjct: 389  356

Query: 231  290
           
Sbjct: 449  356

Query: 291  315
           
Sbjct: 509  356

[Close]

BLAST of WMU73889 vs. NCBI nr
Match: gi|731387849|ref|XP_010649397.1| (PREDICTED: uncharacterized protein LOC100245499 isoform X3 [Vitis vinifera])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 56/88 (63.64%), Postives = 73/88 (82.95%), Query Frame = 3


Query: 51  SSSVSVMMFLEILTSRYAEDDFLKALPTRLIIGLVSLFISISSMVAAFGASLHLVLVHQV 110
           SSS SV+MFL ILTSRYAE+DFLK+LP +LIIGL SLF S+ SM+ AFG+++++VL H++
Sbjct: 626 SSSTSVLMFLGILTSRYAEEDFLKSLPNKLIIGLSSLFFSLLSMMVAFGSAIYVVLSHRI 685

Query: 111 KWVWIPLILFAFIPVILFAMSQFPLLVQ 170
            WV IPLI+ A IP+  FA+ QFPLLV+
Sbjct: 686 AWVSIPLIVLACIPITFFALLQFPLLVE 713

Query: 171  230
           
Sbjct: 746  713

Query: 231  290
           
Sbjct: 806  713

Query: 291  315
           
Sbjct: 866  713

[Close]

BLAST of WMU73889 vs. NCBI nr
Match: gi|731387847|ref|XP_010649396.1| (PREDICTED: uncharacterized protein LOC100245499 isoform X2 [Vitis vinifera])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 56/88 (63.64%), Postives = 73/88 (82.95%), Query Frame = 3


Query: 51  SSSVSVMMFLEILTSRYAEDDFLKALPTRLIIGLVSLFISISSMVAAFGASLHLVLVHQV 110
           SSS SV+MFL ILTSRYAE+DFLK+LP +LIIGL SLF S+ SM+ AFG+++++VL H++
Sbjct: 626 SSSTSVLMFLGILTSRYAEEDFLKSLPNKLIIGLSSLFFSLLSMMVAFGSAIYVVLSHRI 685

Query: 111 KWVWIPLILFAFIPVILFAMSQFPLLVQ 170
            WV IPLI+ A IP+  FA+ QFPLLV+
Sbjct: 686 AWVSIPLIVLACIPITFFALLQFPLLVE 713

Query: 171  230
           
Sbjct: 746  713

Query: 231  290
           
Sbjct: 806  713

Query: 291  315
           
Sbjct: 866  713

The following BLAST results are available for this feature:

BLAST of WMU73889 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04700.1	6.1e-18	46.32	Ankyrin repeat family protein	[more]
AT3G18670.1	1.5e-16	42.05	Ankyrin repeat family protein	[more]
AT5G04680.1	1.7e-15	44.21	Ankyrin repeat family protein	[more]
AT5G04690.1	1.7e-15	44.21	Ankyrin repeat family protein	[more]
AT5G35810.1	1.8e-14	47.67	Ankyrin repeat family protein	[more]

BLAST of WMU73889 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147815431\|emb\|CAN72586.1\|	2.8e-20	63.64	hypothetical protein VITISV_001920 [Vitis vinifera]	[more]
gi\|643737877\|gb\|KDP43902.1\|	2.8e-20	60.00	hypothetical protein JCGZ_20912 [Jatropha curcas]	[more]
gi\|296088579\|emb\|CBI37570.3\|	2.8e-20	63.64	unnamed protein product [Vitis vinifera]	[more]
gi\|731387849\|ref\|XP_010649397.1\|	2.8e-20	63.64	PREDICTED: uncharacterized protein LOC100245499 isoform X3 [Vitis vinifera]	[more]
gi\|731387847\|ref\|XP_010649396.1\|	2.8e-20	63.64	PREDICTED: uncharacterized protein LOC100245499 isoform X2 [Vitis vinifera]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla013017	Cla013017	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S3_0170218	S3_0170218	EST