WMU71440 (transcribed_cluster) Watermelon (97103) v1

NameWMU71440
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCOP1-interactive protein, putative
LocationChr7 : 31185574 .. 31186006 (-)
Sequence length437
The following sequences are available for this feature:

transcribed_cluster sequence

GGGGACGATTGAAGAACAACAAAAATTATAGAAGATGTAAATGTCGTGACTGATCAGGTGAAGAGGCAGTTAACAGCTACGATTGAAGAAAAGGAAGTTCTGAACTTGGATCATGCGACAGCTTTTAAGCAAGATAATTGAAGCTGATAAGATCATAGGAGATATGAAGACACAAGCTGAAACATGGGTTGTTGAAAAAACTGGTCTTCTGCACATGATTGAAGAGGTGAGTCAGGAGATCAGCAATGCTGTTAAGATAGAAGCAGAACTCAATGGAAGATCGAAAGATATTGAAACTGAGAGAGATCGCTTGATCAAGGAAAAATGAGACTGCATGGAAGGAGATTGAACTAGGTAAACAAGTTAGACGAAGAATTAAATGCCATGATTGATCAACTGAACAGCCAATTGACAACTACGGTAGAAGAAAAGAAAGA
BLAST of WMU71440 vs. NCBI nr
Match: gi|449464076|ref|XP_004149755.1| (PREDICTED: myosin-11 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 2

Query: 125 LSKIIEADKIIGDMKTQAETWVVEKTGLLHMIEEVSQEISNAVKIEAELNGRSKDIETER 184
           LSKI EAD+IIGDMKTQ+ETW VEKT LL+MIEE++Q +S+A+KIEAEL GR KDIE ER
Sbjct: 512 LSKITEADQIIGDMKTQSETWAVEKTDLLYMIEEMNQRMSDAIKIEAELRGRLKDIEIER 571

Query: 185 DRLIKEK 244
           D LIKEK
Sbjct: 572 DGLIKEK 578

Query: 245 304
           
Sbjct: 632 578

Query: 305 326
           
Sbjct: 692 578

BLAST of WMU71440 vs. NCBI nr
Match: gi|659102128|ref|XP_008451966.1| (PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 7.3e-18
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 2

Query: 125 LSKIIEADKIIGDMKTQAETWVVEKTGLLHMIEEVSQEISNAVKIEAELNGRSKDIETER 184
           LSKI EAD+IIGDMKTQ+ETW VEKT LL MIEE++Q IS+A+KIEAEL G+ KDIE ER
Sbjct: 282 LSKITEADQIIGDMKTQSETWAVEKTDLLCMIEEMNQRISDAIKIEAELRGKLKDIEIER 341

Query: 185 DRLIKEK 244
           D LIKEK
Sbjct: 342 DGLIKEK 348

Query: 245 304
           
Sbjct: 402 348

Query: 305 326
           
Sbjct: 462 348

BLAST of WMU71440 vs. NCBI nr
Match: gi|1009156734|ref|XP_015896398.1| (PREDICTED: restin homolog [Ziziphus jujuba])

HSP 1 Score: 59.3 bits (142), Expect = 6.4e-06
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 2

Query: 125 LSKIIEADKIIGDMKTQAETWVVEKTGLLHMIEEVSQEISNAVKIEAELNGRSKDIETER 184
           LSKI E +KI  D+K++AE   +EK+ LL    E++Q+++ A  +E +LN R +D+E E+
Sbjct: 174 LSKIEETEKIASDLKSEAERLEIEKSELLIENRELNQKLNTAGNVEEDLNKRLEDLEIEK 233

Query: 185 DRLIKE 244
           D+LIKE
Sbjct: 234 DKLIKE 239

Query: 245 304
           
Sbjct: 294 239

Query: 305 323
           
Sbjct: 354 239

BLAST of WMU71440 vs. NCBI nr
Match: gi|645267426|ref|XP_008239065.1| (PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 [Prunus mume])

HSP 1 Score: 58.9 bits (141), Expect = 8.4e-06
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 2

Query: 125 LSKIIEADKIIGDMKTQAETWVVEKTGLLHMIEEVSQEISNAVKIEAELNGRSKDIETER 184
           L+KI E +KI  D+KT+AE   VEK+ LL    E+++++    KIEAELN R +++E ER
Sbjct: 172 LTKIEETEKIARDLKTEAERLDVEKSQLLAGNNELNKKLEAGGKIEAELNQRVENVERER 231

Query: 185 DRLIKEK 244
           D LI+EK
Sbjct: 232 DNLIQEK 238

Query: 245 304
           
Sbjct: 292 238

Query: 305 326
           
Sbjct: 352 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|449464076|ref|XP_004149755.1|1.9e-1876.12PREDICTED: myosin-11 [Cucumis sativus][more]
gi|659102128|ref|XP_008451966.1|7.3e-1876.12PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 isoform ... [more]
gi|1009156734|ref|XP_015896398.1|6.4e-0645.45PREDICTED: restin homolog [Ziziphus jujuba][more]
gi|645267426|ref|XP_008239065.1|8.4e-0649.25PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 [Prunus ... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla010924Cla010924gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S3_0090904S3_0090904EST