WMU70964 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU70964
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Receptor-like kinase 1
Location	Chr5 : 12879459 .. 12879786 (+)
Sequence length	332

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTGTTATTGGAGATGCTAACAGGAAAATCTCCTACACATTCTATCTTCAATGATGAAGCTGTGGGCCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAACAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCTTAGAACTCGCTCTGCAATGTACCGTCCCGTATCCTGATAATCGTCCTGGAACGGACGAGATTGTTCGACGTATCGAAGAACTTTGTCGATCAACCTCCCAAAAACAGAGTGAGGCAATTGACAATGATGGAATAATGGTATTTCCACACAGTTTTCATTC

Library


Library category	ESTs
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU70964 vs. TAIR10
Match: AT5G58300.1 (AT5G58300.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 116.7 bits (291), Expect = 9.0e-27
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           L+LEMLTGKSP  S   D+ V LPRWVQSVV+EEWT+EVFD +L+R+QN+EEEMVQ+L++
Sbjct: 545 LILEMLTGKSPVQSPSRDDMVDLPRWVQSVVREEWTSEVFDIELMRFQNIEEEMVQMLQI 604

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQSEAIDND 120
           A+ C    P+ RP  D++VR IEE+  S S+    + D++
Sbjct: 605 AMACVAQVPEVRPTMDDVVRMIEEIRVSDSETTRPSSDDN 644

Query: 121  180
           
Sbjct: 665  644

Query: 181  240
           
Sbjct: 725  644

Query: 241  300
           
Sbjct: 785  644

[Close]

BLAST of WMU70964 vs. TAIR10
Match: AT2G26730.1 (AT2G26730.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-25
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           LLLE+LTGKSP  +   +E + LPRWV SVV+EEWTAEVFD +L+RY N+EEEMVQLL++
Sbjct: 535 LLLELLTGKSPNQASLGEEGIDLPRWVLSVVREEWTAEVFDVELMRYHNIEEEMVQLLQI 594

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEELCRS 120
           A+ C    PD RP   E++R IE++ RS
Sbjct: 595 AMACVSTVPDQRPVMQEVLRMIEDVNRS 622

Query: 121  180
           
Sbjct: 655  622

Query: 181  240
           
Sbjct: 715  622

Query: 241  265
           
Sbjct: 775  622

[Close]

BLAST of WMU70964 vs. TAIR10
Match: AT4G23740.1 (AT4G23740.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-23
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           +LLE+LTGKSP H+   DE + L RWV SVV+EEWTAEVFD +LLRY N+EEEMV++L++
Sbjct: 524 VLLELLTGKSPIHTTAGDEIIHLVRWVHSVVREEWTAEVFDIELLRYTNIEEEMVEMLQI 583

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEEL 120
           A+ C V   D RP   ++VR IE +
Sbjct: 584 AMSCVVKAADQRPKMSDLVRLIENV 608

Query: 121  180
           
Sbjct: 644  608

Query: 181  240
           
Sbjct: 704  608

Query: 241  256
           
Sbjct: 764  608

[Close]

BLAST of WMU70964 vs. TAIR10
Match: AT5G05160.1 (AT5G05160.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 104.4 bits (259), Expect = 4.6e-23
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 1   LLLEMLTGKSP-THSIFNDEAV--GLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQL 60
           ++LEMLTGK+P T     DE V   LPRWV+SVV+EEWTAEVFD +LL++QN+EEEMVQ+
Sbjct: 529 VILEMLTGKTPLTQPGLEDERVVIDLPRWVRSVVREEWTAEVFDVELLKFQNIEEEMVQM 588

Query: 61  LELALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQ 120
           L+LAL C    P++RP  +E+ R IE++ R    +Q
Sbjct: 589 LQLALACVARNPESRPKMEEVARMIEDVRRLDQSQQ 624

Query: 121  180
           
Sbjct: 649  624

Query: 181  240
           
Sbjct: 709  624

Query: 241  280
           
Sbjct: 769  624

[Close]

BLAST of WMU70964 vs. TAIR10
Match: AT3G08680.1 (AT3G08680.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-22
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQ-NVEEEMVQLLE 60
           LLLEMLTGK+   +  ++E V LP+WVQSVV+EEWT EVFD +L++ Q NVEEEMVQ+L+
Sbjct: 529 LLLEMLTGKAAGKTTGHEEVVDLPKWVQSVVREEWTGEVFDVELIKQQHNVEEEMVQMLQ 588

Query: 61  LALQCTVPYPDNRPGTDEIVRRIEELCRSTS 120
           +A+ C   +PD+RP  +E+V  +EE+  S S
Sbjct: 589 IAMACVSKHPDSRPSMEEVVNMMEEIRPSGS 619

Query: 121  180
           
Sbjct: 649  619

Query: 181  240
           
Sbjct: 709  619

Query: 241  271
           
Sbjct: 769  619

[Close]

BLAST of WMU70964 vs. Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-25
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           L+LEMLTGKSP  S   D+ V LPRWVQSVV+EEWT+EVFD +L+R+QN+EEEMVQ+L++
Sbjct: 545 LILEMLTGKSPVQSPSRDDMVDLPRWVQSVVREEWTSEVFDIELMRFQNIEEEMVQMLQI 604

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQSEAIDND 120
           A+ C    P+ RP  D++VR IEE+  S S+    + D++
Sbjct: 605 AMACVAQVPEVRPTMDDVVRMIEEIRVSDSETTRPSSDDN 644

Query: 121  180
           
Sbjct: 665  644

Query: 181  240
           
Sbjct: 725  644

Query: 241  300
           
Sbjct: 785  644

[Close]

BLAST of WMU70964 vs. Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-24
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           LLLE+LTGKSP  +   +E + LPRWV SVV+EEWTAEVFD +L+RY N+EEEMVQLL++
Sbjct: 535 LLLELLTGKSPNQASLGEEGIDLPRWVLSVVREEWTAEVFDVELMRYHNIEEEMVQLLQI 594

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEELCRS 120
           A+ C    PD RP   E++R IE++ RS
Sbjct: 595 AMACVSTVPDQRPVMQEVLRMIEDVNRS 622

Query: 121  180
           
Sbjct: 655  622

Query: 181  240
           
Sbjct: 715  622

Query: 241  265
           
Sbjct: 775  622

[Close]

BLAST of WMU70964 vs. Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-22
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           +LLE+LTGKSP H+   DE + L RWV SVV+EEWTAEVFD +LLRY N+EEEMV++L++
Sbjct: 524 VLLELLTGKSPIHTTAGDEIIHLVRWVHSVVREEWTAEVFDIELLRYTNIEEEMVEMLQI 583

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEEL 120
           A+ C V   D RP   ++VR IE +
Sbjct: 584 AMSCVVKAADQRPKMSDLVRLIENV 608

Query: 121  180
           
Sbjct: 644  608

Query: 181  240
           
Sbjct: 704  608

Query: 241  256
           
Sbjct: 764  608

[Close]

BLAST of WMU70964 vs. Swiss-Prot
Match: Y5516_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.2e-22
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 1   LLLEMLTGKSP-THSIFNDEAV--GLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQL 60
           ++LEMLTGK+P T     DE V   LPRWV+SVV+EEWTAEVFD +LL++QN+EEEMVQ+
Sbjct: 529 VILEMLTGKTPLTQPGLEDERVVIDLPRWVRSVVREEWTAEVFDVELLKFQNIEEEMVQM 588

Query: 61  LELALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQ 120
           L+LAL C    P++RP  +E+ R IE++ R    +Q
Sbjct: 589 LQLALACVARNPESRPKMEEVARMIEDVRRLDQSQQ 624

Query: 121  180
           
Sbjct: 649  624

Query: 181  240
           
Sbjct: 709  624

Query: 241  280
           
Sbjct: 769  624

[Close]

BLAST of WMU70964 vs. Swiss-Prot
Match: Y3868_ARATH (Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-21
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQ-NVEEEMVQLLE 60
           LLLEMLTGK+   +  ++E V LP+WVQSVV+EEWT EVFD +L++ Q NVEEEMVQ+L+
Sbjct: 529 LLLEMLTGKAAGKTTGHEEVVDLPKWVQSVVREEWTGEVFDVELIKQQHNVEEEMVQMLQ 588

Query: 61  LALQCTVPYPDNRPGTDEIVRRIEELCRSTS 120
           +A+ C   +PD+RP  +E+V  +EE+  S S
Sbjct: 589 IAMACVSKHPDSRPSMEEVVNMMEEIRPSGS 619

Query: 121  180
           
Sbjct: 649  619

Query: 181  240
           
Sbjct: 709  619

Query: 241  271
           
Sbjct: 769  619

[Close]

BLAST of WMU70964 vs. NCBI nr
Match: gi|449456219|ref|XP_004145847.1| (PREDICTED: probable inactive receptor kinase RLK902 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 5.7e-47
Identity = 96/110 (87.27%), Postives = 100/110 (90.91%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           LLLEMLTGKSPTHSIFN+EAV LPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL
Sbjct: 523 LLLEMLTGKSPTHSIFNEEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 582

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQSEAIDNDGIMVFPHSFH 120
           ALQCTVPYPDNRPG DEIVRRI+ELCRSTSQKQSE I+N+G       FH
Sbjct: 583 ALQCTVPYPDNRPGMDEIVRRIDELCRSTSQKQSEGIENNGNNGISSQFH 632

Query: 121  180
           
Sbjct: 643  632

Query: 181  240
           
Sbjct: 703  632

Query: 241  300
           
Sbjct: 763  632

Query: 301  331
           
Sbjct: 823  632

[Close]

BLAST of WMU70964 vs. NCBI nr
Match: gi|659114351|ref|XP_008457025.1| (PREDICTED: probable inactive receptor kinase RLK902 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-45
Identity = 94/110 (85.45%), Postives = 98/110 (89.09%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           LLLEMLTGKSPTHSIF++EAV LPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL
Sbjct: 523 LLLEMLTGKSPTHSIFHEEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 582

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQSEAIDNDGIMVFPHSFH 120
           ALQCTVPYPDNRPG DEIV RIEELCR+T QKQSE I+NDG       FH
Sbjct: 583 ALQCTVPYPDNRPGMDEIVGRIEELCRTTLQKQSEGIENDGNNGISSQFH 632

Query: 121  180
           
Sbjct: 643  632

Query: 181  240
           
Sbjct: 703  632

Query: 241  300
           
Sbjct: 763  632

Query: 301  331
           
Sbjct: 823  632

[Close]

BLAST of WMU70964 vs. NCBI nr
Match: gi|747103426|ref|XP_011099906.1| (PREDICTED: probable inactive receptor kinase At1g48480 [Sesamum indicum])

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           LLLE+LTGK+PTHS+ N+E V LPRWVQSVV+EEWTAEVFD +LLRYQNVEE+MVQLL+L
Sbjct: 625 LLLELLTGKAPTHSLMNEEGVDLPRWVQSVVREEWTAEVFDLELLRYQNVEEDMVQLLQL 684

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQS-EAIDNDGIMVFPHS 120
           A+ CT  YPD RP   E+V +IEELCRS+SQ  S + +D D     PHS
Sbjct: 685 AVDCTAQYPDKRPSMVEVVGKIEELCRSSSQDLSGDIVDVDD---EPHS 730

Query: 121  180
           
Sbjct: 745  730

Query: 181  240
           
Sbjct: 805  730

Query: 241  300
           
Sbjct: 865  730

Query: 301  325
           
Sbjct: 925  730

[Close]

BLAST of WMU70964 vs. NCBI nr
Match: gi|296087139|emb|CBI33513.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-31
Identity = 68/99 (68.69%), Postives = 80/99 (80.81%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           LLLE+LTGK+PTH++ N+E V LPRWVQSVV+EEWTAEVFD +LLRYQNVEEEMVQLL+L
Sbjct: 503 LLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTAEVFDLELLRYQNVEEEMVQLLQL 562

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQSEAIDN 120
           AL C   YPD RP   ++  RIEELCRS+SQ + E   N
Sbjct: 563 ALDCAAQYPDKRPSMLDVTSRIEELCRSSSQHEQEPDHN 601

Query: 121  180
           
Sbjct: 623  601

Query: 181  240
           
Sbjct: 683  601

Query: 241  298
           
Sbjct: 743  601

[Close]

BLAST of WMU70964 vs. NCBI nr
Match: gi|225453189|ref|XP_002276147.1| (PREDICTED: probable inactive receptor kinase At1g48480 [Vitis vinifera])

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-31
Identity = 68/99 (68.69%), Postives = 80/99 (80.81%), Query Frame = 1


Query: 1   LLLEMLTGKSPTHSIFNDEAVGLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLEL 60
           LLLE+LTGK+PTH++ N+E V LPRWVQSVV+EEWTAEVFD +LLRYQNVEEEMVQLL+L
Sbjct: 522 LLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTAEVFDLELLRYQNVEEEMVQLLQL 581

Query: 61  ALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQSEAIDN 120
           AL C   YPD RP   ++  RIEELCRS+SQ + E   N
Sbjct: 582 ALDCAAQYPDKRPSMLDVTSRIEELCRSSSQHEQEPDHN 620

Query: 121  180
           
Sbjct: 642  620

Query: 181  240
           
Sbjct: 702  620

Query: 241  298
           
Sbjct: 762  620

The following BLAST results are available for this feature:

BLAST of WMU70964 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58300.1	9.0e-27	55.00	Leucine-rich repeat protein kinase family protein	[more]
AT2G26730.1	1.3e-25	59.09	Leucine-rich repeat protein kinase family protein	[more]
AT4G23740.1	1.6e-23	57.65	Leucine-rich repeat protein kinase family protein	[more]
AT5G05160.1	4.6e-23	55.21	Leucine-rich repeat protein kinase family protein	[more]
AT3G08680.1	1.8e-22	54.95	Leucine-rich repeat protein kinase family protein	[more]

BLAST of WMU70964 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5830_ARATH	1.6e-25	55.00	Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300...	[more]
Y2267_ARATH	2.3e-24	59.09	Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730...	[more]
Y4374_ARATH	2.8e-22	57.65	Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740...	[more]
Y5516_ARATH	8.2e-22	55.21	Probable leucine-rich repeat receptor-like protein kinase At5g05160 OS=Arabidops...	[more]
Y3868_ARATH	3.1e-21	54.95	Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680...	[more]

BLAST of WMU70964 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456219\|ref\|XP_004145847.1\|	5.7e-47	87.27	PREDICTED: probable inactive receptor kinase RLK902 [Cucumis sativus]	[more]
gi\|659114351\|ref\|XP_008457025.1\|	1.8e-45	85.45	PREDICTED: probable inactive receptor kinase RLK902 [Cucumis melo]	[more]
gi\|747103426\|ref\|XP_011099906.1\|	1.1e-31	66.97	PREDICTED: probable inactive receptor kinase At1g48480 [Sesamum indicum]	[more]
gi\|296087139\|emb\|CBI33513.3\|	2.0e-31	68.69	unnamed protein product [Vitis vinifera]	[more]
gi\|225453189\|ref\|XP_002276147.1\|	2.0e-31	68.69	PREDICTED: probable inactive receptor kinase At1g48480 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR011009	Kinase-like_dom_sf

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla013213	Cla013213	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S3_0073280	S3_0073280	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011009	Protein kinase-like domain	unknown	SSF56112	Protein kinase-like (PK-like)	coord: 1..85 score: 3.7
None	No IPR available	GENE3D	G3DSA:1.10.510.10		coord: 1..95 score: 2.
None	No IPR available	PANTHER	PTHR27008	FAMILY NOT NAMED	coord: 1..101 score: 2.8
None	No IPR available	PANTHER	PTHR27008:SF17	SUBFAMILY NOT NAMED	coord: 1..101 score: 2.8