WMU69867 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU69867
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Lectin receptor kinase
Location	Chr9 : 21894450 .. 21897537 (-)
Sequence length	292

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTTTAAATGTATTTACCCTGGTGAACTTGGGATTTTGCTGGAAAGCAGCGTGGCAAGTAAAGAATCCGACATCTACAGCTTCGGAATCGTGTGCTTGGAAATCGCCGAAGAAGGAGTGTGATTGAGGCTGCCGACCAGAAATTGCGGCAAAATTTCAAAAGAGAAGAGATGAACCAACTGTTGATCATAGGACTTGCCTGTGCTCAGCCGGATTTCTCTCTACGGCCTTCCATCAAACAGGTAATCGACATGCTTATCTTCACATCGCCATCGCCGAATCTGCCATTGGAAT

Library


Library category	ESTs
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU69867 vs. TAIR10
Match: AT5G65600.1 (AT5G65600.1 Concanavalin A-like lectin protein kinase family protein)

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-09
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLPLE 177
           +    D KL ++F ++E   LL++GL CA PD + RPSIKQ I ++ F SP P+LPL+
Sbjct: 583 ITSCVDDKLGEDFDKKEAECLLVLGLWCAHPDKNSRPSIKQGIQVMNFESPLPDLPLK 640

Query: 178  237
           
Sbjct: 643  640

Query: 238  292
           
Sbjct: 703  640

HSP 2 Score: 33.5 bits (75), Expect = 8.9e-02
Identity = 16/17 (94.12%), Postives = 14/17 (82.35%), Query Frame = 2


Query: 53  ASKESDIYSFGIVCLEI 104
           ASKESDIYSFGIV LEI
Sbjct: 528 ASKESDIYSFGIVLLEI 544

[Close]

BLAST of WMU69867 vs. TAIR10
Match: AT5G10530.1 (AT5G10530.1 Concanavalin A-like lectin protein kinase family protein)

HSP 1 Score: 53.5 bits (127), Expect = 8.3e-08
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 118 VIEAADQKLR-QNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLP 177
           VI A D+KLR   F  ++   L+I+GL CA PD + RPSIKQ I +L   +P P+LP
Sbjct: 561 VITAIDEKLRIGGFDEKQAECLMIVGLWCAHPDVNTRPSIKQAIQVLNLEAPVPHLP 617

Query: 178  237
           
Sbjct: 621  617

Query: 238  286
           
Sbjct: 681  617

HSP 2 Score: 32.7 bits (73), Expect = 1.5e-01
Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 2


Query: 53  ASKESDIYSFGIVCLEI 104
           ASKESD+YSFG+V LEI
Sbjct: 512 ASKESDVYSFGVVTLEI 528

[Close]

BLAST of WMU69867 vs. TAIR10
Match: AT5G55830.1 (AT5G55830.1 Concanavalin A-like lectin protein kinase family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDML---IFTSPSPNL 177
           V+EA D++L+  F  E M +LL++GL CA PD + RPS+++V+ +L   I  SP P +
Sbjct: 594 VLEAVDERLKGEFDEEMMKKLLLVGLKCAHPDSNERPSMRRVLQILNNEIEPSPVPKM 651

Query: 178  237
           
Sbjct: 654  651

Query: 238  283
           
Sbjct: 714  651

[Close]

BLAST of WMU69867 vs. TAIR10
Match: AT5G42120.1 (AT5G42120.1 Concanavalin A-like lectin protein kinase family protein)

HSP 1 Score: 51.2 bits (121), Expect = 4.1e-07
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLP 177
           V++ AD  LR+ F  EEM ++L++G+ CA PD   RP +K  + ++   +P P LP
Sbjct: 599 VLDGADIMLREEFDAEEMERVLMVGMVCAHPDSEKRPRVKDAVRIIRGEAPLPVLP 654

Query: 178  237
           
Sbjct: 659  654

Query: 238  286
           
Sbjct: 719  654

[Close]

BLAST of WMU69867 vs. TAIR10
Match: AT3G53380.1 (AT3G53380.1 Concanavalin A-like lectin protein kinase family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLP 177
           V  AAD +L   F   EM ++L++GLAC+ PD + RP+++ V+ MLI  +  P +P
Sbjct: 606 VSAAADSRLEGKFDEGEMWRVLVVGLACSHPDPAFRPTMRSVVQMLIGEADVPVVP 661

Query: 178  237
           
Sbjct: 666  661

Query: 238  286
           
Sbjct: 726  661

[Close]

BLAST of WMU69867 vs. Swiss-Prot
Match: LRK92_ARATH (L-type lectin-domain containing receptor kinase IX.2 OS=Arabidopsis thaliana GN=LECRK92 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-08
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLPLE 177
           +    D KL ++F ++E   LL++GL CA PD + RPSIKQ I ++ F SP P+LPL+
Sbjct: 583 ITSCVDDKLGEDFDKKEAECLLVLGLWCAHPDKNSRPSIKQGIQVMNFESPLPDLPLK 640

Query: 178  237
           
Sbjct: 643  640

Query: 238  292
           
Sbjct: 703  640

HSP 2 Score: 33.5 bits (75), Expect = 1.6e+00
Identity = 16/17 (94.12%), Postives = 14/17 (82.35%), Query Frame = 2


Query: 53  ASKESDIYSFGIVCLEI 104
           ASKESDIYSFGIV LEI
Sbjct: 528 ASKESDIYSFGIVLLEI 544

[Close]

BLAST of WMU69867 vs. Swiss-Prot
Match: LRK91_ARATH (L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-06
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 118 VIEAADQKLR-QNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLP 177
           VI A D+KLR   F  ++   L+I+GL CA PD + RPSIKQ I +L   +P P+LP
Sbjct: 561 VITAIDEKLRIGGFDEKQAECLMIVGLWCAHPDVNTRPSIKQAIQVLNLEAPVPHLP 617

Query: 178  237
           
Sbjct: 621  617

Query: 238  286
           
Sbjct: 681  617

HSP 2 Score: 32.7 bits (73), Expect = 2.7e+00
Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 2


Query: 53  ASKESDIYSFGIVCLEI 104
           ASKESD+YSFG+V LEI
Sbjct: 512 ASKESDVYSFGVVTLEI 528

[Close]

BLAST of WMU69867 vs. Swiss-Prot
Match: LRKS7_ARATH (Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana GN=LECRKS7 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.6e-06
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDML---IFTSPSPNL 177
           V+EA D++L+  F  E M +LL++GL CA PD + RPS+++V+ +L   I  SP P +
Sbjct: 594 VLEAVDERLKGEFDEEMMKKLLLVGLKCAHPDSNERPSMRRVLQILNNEIEPSPVPKM 651

Query: 178  237
           
Sbjct: 654  651

Query: 238  283
           
Sbjct: 714  651

[Close]

BLAST of WMU69867 vs. Swiss-Prot
Match: LRKS6_ARATH (L-type lectin-domain containing receptor kinase S.6 OS=Arabidopsis thaliana GN=LECRKS6 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.3e-06
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLP 177
           V++ AD  LR+ F  EEM ++L++G+ CA PD   RP +K  + ++   +P P LP
Sbjct: 599 VLDGADIMLREEFDAEEMERVLMVGMVCAHPDSEKRPRVKDAVRIIRGEAPLPVLP 654

Query: 178  237
           
Sbjct: 659  654

Query: 238  286
           
Sbjct: 719  654

[Close]

BLAST of WMU69867 vs. NCBI nr
Match: gi|778724631|ref|XP_004137072.2| (PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-18
Identity = 50/59 (84.75%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 115 SVIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLPLE 174
           SV EAAD KLRQNFKREEM QLLI+GLACAQPDF +RPSIKQVIDML F SP PNLPLE
Sbjct: 600 SVEEAADPKLRQNFKREEMKQLLIVGLACAQPDFRVRPSIKQVIDMLNFKSPLPNLPLE 658

Query: 175  234
           
Sbjct: 660  658

Query: 235  292
           
Sbjct: 720  658

[Close]

BLAST of WMU69867 vs. NCBI nr
Match: gi|802573647|ref|XP_012068412.1| (PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas])

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-09
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLP 177
           +IEA D++LR+ F   ++  L+I+GL C  PDF+LRPSI+QVI++L F +P PNLP
Sbjct: 527 IIEAMDKRLREEFDERQLECLMIVGLWCCHPDFNLRPSIRQVINILNFEAPLPNLP 582

Query: 178  237
           
Sbjct: 587  582

Query: 238  286
           
Sbjct: 647  582

[Close]

BLAST of WMU69867 vs. NCBI nr
Match: gi|1009149606|ref|XP_015892567.1| (PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Ziziphus jujuba])

HSP 1 Score: 68.6 bits (166), Expect = 7.1e-09
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLPLE 177
           V+EAAD +L   F  ++M +LLI+GL CA+PD++LRPSIKQ I +L F +P P LPLE
Sbjct: 576 VLEAADPRLCGEFDDQQMERLLIVGLWCARPDYNLRPSIKQAIRVLEFEAPLPALPLE 633

Query: 178  237
           
Sbjct: 636  633

Query: 238  292
           
Sbjct: 696  633

[Close]

BLAST of WMU69867 vs. NCBI nr
Match: gi|1009148916|ref|XP_015892196.1| (PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Ziziphus jujuba])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLP 177
           V+EAAD +L  +F  EEM +L+++GL CA PD++LRPSI+QV+ +L F +P P LP
Sbjct: 574 VLEAADPRLGGDFNGEEMERLMVVGLWCAHPDYNLRPSIRQVVQVLNFEAPLPLLP 629

Query: 178  237
           
Sbjct: 634  629

Query: 238  286
           
Sbjct: 694  629

[Close]

BLAST of WMU69867 vs. NCBI nr
Match: gi|920687914|gb|KOM31897.1| (hypothetical protein LR48_Vigan01g145300 [Vigna angularis])

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-08
Identity = 29/56 (51.79%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 118 VIEAADQKLRQNFKREEMNQLLIIGLACAQPDFSLRPSIKQVIDMLIFTSPSPNLP 177
           V+EAAD+KL + F+ ++M  L+I+GL C  PD ++RPSI+QVI +L F +P P+LP
Sbjct: 577 VLEAADEKLNREFEEQQMECLMIVGLWCCHPDHTMRPSIRQVISVLNFEAPLPSLP 632

Query: 178  237
           
Sbjct: 637  632

Query: 238  286
           
Sbjct: 697  632

The following BLAST results are available for this feature:

BLAST of WMU69867 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65600.1	4.4e-09	46.55	Concanavalin A-like lectin protein kinase family protein	[more]
AT5G10530.1	8.3e-08	49.12	Concanavalin A-like lectin protein kinase family protein	[more]
AT5G55830.1	3.2e-07	43.10	Concanavalin A-like lectin protein kinase family protein	[more]
AT5G42120.1	4.1e-07	39.29	Concanavalin A-like lectin protein kinase family protein	[more]
AT3G53380.1	1.6e-06	41.07	Concanavalin A-like lectin protein kinase family protein	[more]

BLAST of WMU69867 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRK92_ARATH	7.8e-08	46.55	L-type lectin-domain containing receptor kinase IX.2 OS=Arabidopsis thaliana GN=...	[more]
LRK91_ARATH	1.5e-06	49.12	L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=...	[more]
LRKS7_ARATH	5.6e-06	43.10	Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thal...	[more]
LRKS6_ARATH	7.3e-06	39.29	L-type lectin-domain containing receptor kinase S.6 OS=Arabidopsis thaliana GN=L...	[more]

BLAST of WMU69867 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724631\|ref\|XP_004137072.2\|	2.2e-18	84.75	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Cucumis sa...	[more]
gi\|802573647\|ref\|XP_012068412.1\|	4.1e-09	53.57	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha c...	[more]
gi\|1009149606\|ref\|XP_015892567.1\|	7.1e-09	56.90	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Ziziphus j...	[more]
gi\|1009148916\|ref\|XP_015892196.1\|	1.6e-08	53.57	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Ziziphus j...	[more]
gi\|920687914\|gb\|KOM31897.1\|	2.1e-08	51.79	hypothetical protein LR48_Vigan01g145300 [Vigna angularis]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla012966	Cla012966	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S3_0034634	S3_0034634	EST