WMU69737 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU69737
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 11641296 .. 11642110 (-)
Sequence length	267

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATCGATCAAACCATATTCCTTAGCTTCCCAAGGATTCATAAAATTAATCACGATCTGTGTCGAATTCAATCTGCTGTAGTGGCTTTTCCTTGTTATTCTTAGAAAAATTTTAAGTTTTAGTCTTAATTCTTGTGATATGCCATTTCTCGTATCCGTATGCTCATCTCAGTTGCTTTTCCTTCCAGCTGTTCCAAGAGGTTGATGGATCATCACTCTTCCATTGGGCATGCAGAATCGCTTTCCCTTGGAACCAGAAGCTAGAAGAAA

Library


Library category	ESTs
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU69737 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPLGTAGRKSN*DEHTDTRNGISQELRLKLKIFLRITR 60
           FLLASGSKGKR+CMPN +VMIHQPLGTAG K+  +     R  +  +++L  KIF RIT 
Sbjct: 168 FLLASGSKGKRYCMPNSKVMIHQPLGTAGGKAT-EMSIRIREMMYHKIKLN-KIFSRITG 227

Query: 61  KSHYSRLNSTQIVINFMNPWEAKEYGLID 120
           K   S + S     NF+NPWEAKEYGLID
Sbjct: 228 KPE-SEIESDTDRDNFLNPWEAKEYGLID 253

Query: 121  180
           
Sbjct: 288  253

Query: 181  240
           
Sbjct: 348  253

Query: 241  268
           
Sbjct: 408  253

[Close]

BLAST of WMU69737 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 36/91 (39.56%), Postives = 47/91 (51.65%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPLGTAGRKSN*DEHTDTRNGISQELRLKLKI--FLRI 60
           FLL++G+KGKR+ +PN R+MIHQPLG A         TD     ++ L  K  +  +L  
Sbjct: 197 FLLSAGTKGKRYSLPNSRIMIHQPLGGAQ-----GGQTDIDIQANEMLHHKANLNGYLAY 256

Query: 61  TRKSHYSRLNSTQIVINFMNPWEAKEYGLID 120
                  ++N       FM+  EAKEYGLID
Sbjct: 257 HTGQSLEKINQDTDRDFFMSAKEAKEYGLID 282

Query: 121  180
           
Sbjct: 317  282

Query: 181  240
           
Sbjct: 377  282

Query: 241  268
           
Sbjct: 437  282

[Close]

BLAST of WMU69737 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4)

HSP 1 Score: 50.8 bits (120), Expect = 4.9e-07
Identity = 34/88 (38.64%), Postives = 45/88 (51.14%), Query Frame = -1


Query: 1   LLASGSKGKRFCMPNGRVMIHQPLGTAGRKSN*DEHTDTRNGISQELRLKLKIFLRITRK 60
           +L +G+KGKRF MPN R+MIHQPLG A  ++  D     +  +  +  +   I    T +
Sbjct: 163 ILGAGTKGKRFAMPNTRIMIHQPLGGASGQAI-DVEIQAKEVMHNKNNV-TSIIAGCTSR 222

Query: 61  SHYSRLNSTQIVINFMNPWEAKEYGLID 120
           S    L        +M+P EA EYGLID
Sbjct: 223 SFEQVLKDID-RDRYMSPIEAVEYGLID 247

Query: 121  180
           
Sbjct: 283  247

Query: 181  240
           
Sbjct: 343  247

Query: 241  265
           
Sbjct: 403  247

[Close]

BLAST of WMU69737 vs. Swiss-Prot
Match: CLPP3_ARATH (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-18
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPLGTAGRKSN*DEHTDTRNGISQELRLKLKIFLRITR 60
           FLLASGSKGKR+CMPN +VMIHQPLGTAG K+  +     R  +  +++L  KIF RIT 
Sbjct: 168 FLLASGSKGKRYCMPNSKVMIHQPLGTAGGKAT-EMSIRIREMMYHKIKLN-KIFSRITG 227

Query: 61  KSHYSRLNSTQIVINFMNPWEAKEYGLID 120
           K   S + S     NF+NPWEAKEYGLID
Sbjct: 228 KPE-SEIESDTDRDNFLNPWEAKEYGLID 253

Query: 121  180
           
Sbjct: 288  253

Query: 181  240
           
Sbjct: 348  253

Query: 241  268
           
Sbjct: 408  253

[Close]

BLAST of WMU69737 vs. Swiss-Prot
Match: CLPP_CLOK1 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium kluyveri (strain NBRC 12016) GN=clpP PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-09
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPL-GTAGRKSN*DEHTDTRNGISQELRLKLKIFLRIT 60
           FLLA+G KGKRF +PN  +MIHQPL G  G+ ++   H D      + LR+K K+   I+
Sbjct: 102 FLLAAGEKGKRFALPNSEIMIHQPLGGFQGQATDIGIHAD------RILRIKKKLNAIIS 161

Query: 61  RKSHYS--RLNSTQIVINFMNPWEAKEYGLID 120
            ++  S  ++       NFM   EAKEYGLID
Sbjct: 162 ERTGQSIEKVEKDTERDNFMTAEEAKEYGLID 187

Query: 121  180
           
Sbjct: 222  187

Query: 181  240
           
Sbjct: 282  187

Query: 241  268
           
Sbjct: 342  187

[Close]

BLAST of WMU69737 vs. Swiss-Prot
Match: CLPP_CLOK5 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=clpP PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-09
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPL-GTAGRKSN*DEHTDTRNGISQELRLKLKIFLRIT 60
           FLLA+G KGKRF +PN  +MIHQPL G  G+ ++   H D      + LR+K K+   I+
Sbjct: 102 FLLAAGEKGKRFALPNSEIMIHQPLGGFQGQATDIGIHAD------RILRIKKKLNAIIS 161

Query: 61  RKSHYS--RLNSTQIVINFMNPWEAKEYGLID 120
            ++  S  ++       NFM   EAKEYGLID
Sbjct: 162 ERTGQSIEKVEKDTERDNFMTAEEAKEYGLID 187

Query: 121  180
           
Sbjct: 222  187

Query: 181  240
           
Sbjct: 282  187

Query: 241  268
           
Sbjct: 342  187

[Close]

BLAST of WMU69737 vs. Swiss-Prot
Match: CLPP_HAEDU (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=clpP PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-09
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPLGTAGRKSN*DEHTDTRNGISQELRLKLKIFLRITR 60
           FLL+ G KGKRF +PN RVMIHQPLG A  ++     TD +    + L+LK  +  ++  
Sbjct: 102 FLLSGGKKGKRFALPNARVMIHQPLGGARGQA-----TDIQIQAQEILKLKEMLTRKMAE 161

Query: 61  KS--HYSRLNSTQIVINFMNPWEAKEYGLID 120
            S   ++++ +     NFM+  EAK YGLID
Sbjct: 162 HSGQTFAKVAADTERDNFMSATEAKNYGLID 187

Query: 121  180
           
Sbjct: 222  187

Query: 181  240
           
Sbjct: 282  187

Query: 241  268
           
Sbjct: 342  187

[Close]

BLAST of WMU69737 vs. Swiss-Prot
Match: CLPP_SHEPC (ATP-dependent Clp protease proteolytic subunit OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=clpP PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-09
Identity = 41/98 (41.84%), Postives = 49/98 (50.00%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPL-GTAGRKSN*DEHTDTRNGISQELRL--------K 60
           FLLA G KGKRFC+PN RVMIHQPL G  G+ S+   H     GI  +L L         
Sbjct: 110 FLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLAEHTGQP 169

Query: 61  LKIFLRITRKSHYSRLNSTQIVINFMNPWEAKEYGLID 120
           L++  R T +             NFM+  +A EYGL+D
Sbjct: 170 LEVIERDTDRD------------NFMSATQAVEYGLVD 195

Query: 121  180
           
Sbjct: 230  195

Query: 181  240
           
Sbjct: 290  195

Query: 241  268
           
Sbjct: 350  195

[Close]

BLAST of WMU69737 vs. NCBI nr
Match: gi|769819179|ref|XP_006837173.2| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Amborella trichopoda])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 54/89 (60.67%), Postives = 62/89 (69.66%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPLGTAGRKSN*DEHTDTRNGISQELRLKLKIFLRITR 60
           FLLASGSKGKRFCMPN RVMIHQPLGTAG K+  D     R  +  +++L  KIF RIT 
Sbjct: 165 FLLASGSKGKRFCMPNSRVMIHQPLGTAGGKTT-DMSLRIREMMYHKVKLN-KIFSRITG 224

Query: 61  KSHYSRLNSTQIVINFMNPWEAKEYGLID 120
           KS   ++       NFMNPWEAKEYGL+D
Sbjct: 225 KSE-KQIEIDTDRDNFMNPWEAKEYGLVD 250

Query: 121  180
           
Sbjct: 285  250

Query: 181  240
           
Sbjct: 345  250

Query: 241  268
           
Sbjct: 405  250

[Close]

BLAST of WMU69737 vs. NCBI nr
Match: gi|548839770|gb|ERN00027.1| (hypothetical protein AMTR_s00105p00043000 [Amborella trichopoda])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 54/89 (60.67%), Postives = 62/89 (69.66%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPLGTAGRKSN*DEHTDTRNGISQELRLKLKIFLRITR 60
           FLLASGSKGKRFCMPN RVMIHQPLGTAG K+  D     R  +  +++L  KIF RIT 
Sbjct: 64  FLLASGSKGKRFCMPNSRVMIHQPLGTAGGKTT-DMSLRIREMMYHKVKLN-KIFSRITG 123

Query: 61  KSHYSRLNSTQIVINFMNPWEAKEYGLID 120
           KS   ++       NFMNPWEAKEYGL+D
Sbjct: 124 KSE-KQIEIDTDRDNFMNPWEAKEYGLVD 149

Query: 121  180
           
Sbjct: 184  149

Query: 181  240
           
Sbjct: 244  149

Query: 241  268
           
Sbjct: 304  149

[Close]

BLAST of WMU69737 vs. NCBI nr
Match: gi|778680955|ref|XP_011651427.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-17
Identity = 54/89 (60.67%), Postives = 61/89 (68.54%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPLGTAGRKSN*DEHTDTRNGISQELRLKLKIFLRITR 60
           FLLASGSKGKRFCMPNGRVMIHQPLGTAG K+  +     R     +++L  KIF RIT 
Sbjct: 179 FLLASGSKGKRFCMPNGRVMIHQPLGTAGGKAT-EMSIRIREMAYHKIKLN-KIFSRITG 238

Query: 61  KSHYSRLNSTQIVINFMNPWEAKEYGLID 120
           K    ++       NFMNPWEAKEYGLID
Sbjct: 239 KP-IEQIELDTERDNFMNPWEAKEYGLID 264

Query: 121  180
           
Sbjct: 299  264

Query: 181  240
           
Sbjct: 359  264

Query: 241  268
           
Sbjct: 419  264

[Close]

BLAST of WMU69737 vs. NCBI nr
Match: gi|659114541|ref|XP_008457103.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-17
Identity = 54/89 (60.67%), Postives = 61/89 (68.54%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPLGTAGRKSN*DEHTDTRNGISQELRLKLKIFLRITR 60
           FLLASGSKGKRFCMPNGRVMIHQPLGTAG K+  +     R     +++L  KIF RIT 
Sbjct: 180 FLLASGSKGKRFCMPNGRVMIHQPLGTAGGKAT-EMSIRIREMAYHKIKLN-KIFSRITG 239

Query: 61  KSHYSRLNSTQIVINFMNPWEAKEYGLID 120
           K    ++       NFMNPWEAKEYGLID
Sbjct: 240 KP-LEQIELDTDRDNFMNPWEAKEYGLID 265

Query: 121  180
           
Sbjct: 300  265

Query: 181  240
           
Sbjct: 360  265

Query: 241  268
           
Sbjct: 420  265

[Close]

BLAST of WMU69737 vs. NCBI nr
Match: gi|3599968|gb|AAC35489.1| (clp protease [Arabidopsis thaliana])

HSP 1 Score: 94.7 bits (234), Expect = 8.4e-17
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = -1


Query: 1   FLLASGSKGKRFCMPNGRVMIHQPLGTAGRKSN*DEHTDTRNGISQELRLKLKIFLRITR 60
           FLLASGSKGKR+CMPN +VMIHQPLGTAG K+  +     R  +  +++L  KIF RIT 
Sbjct: 169 FLLASGSKGKRYCMPNSKVMIHQPLGTAGGKAT-EMSIRIREMMYHKIKLN-KIFSRITG 228

Query: 61  KSHYSRLNSTQIVINFMNPWEAKEYGLID 120
           K   S + S     NF+NPWEAKEYGLID
Sbjct: 229 KPE-SEIESDTDRDNFLNPWEAKEYGLID 254

Query: 121  180
           
Sbjct: 289  254

Query: 181  240
           
Sbjct: 349  254

Query: 241  268
           
Sbjct: 409  254

The following BLAST results are available for this feature:

BLAST of WMU69737 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66670.1	1.5e-19	58.43	CLP protease proteolytic subunit 3	[more]
AT1G02560.1	1.2e-08	39.56	nuclear encoded CLP protease 5	[more]
AT5G45390.1	4.9e-07	38.64	CLP protease P4	[more]

BLAST of WMU69737 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP3_ARATH	2.6e-18	58.43	ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis t...	[more]
CLPP_CLOK1	2.9e-09	43.48	ATP-dependent Clp protease proteolytic subunit OS=Clostridium kluyveri (strain N...	[more]
CLPP_CLOK5	2.9e-09	43.48	ATP-dependent Clp protease proteolytic subunit OS=Clostridium kluyveri (strain A...	[more]
CLPP_HAEDU	2.9e-09	41.76	ATP-dependent Clp protease proteolytic subunit OS=Haemophilus ducreyi (strain 35...	[more]
CLPP_SHEPC	3.8e-09	41.84	ATP-dependent Clp protease proteolytic subunit OS=Shewanella putrefaciens (strai...	[more]

BLAST of WMU69737 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|769819179\|ref\|XP_006837173.2\|	1.3e-17	60.67	PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Ambo...	[more]
gi\|548839770\|gb\|ERN00027.1\|	1.3e-17	60.67	hypothetical protein AMTR_s00105p00043000 [Amborella trichopoda]	[more]
gi\|778680955\|ref\|XP_011651427.1\|	4.9e-17	60.67	PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucu...	[more]
gi\|659114541\|ref\|XP_008457103.1\|	4.9e-17	60.67	PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucu...	[more]
gi\|3599968\|gb\|AAC35489.1\|	8.4e-17	58.43	clp protease [Arabidopsis thaliana]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla013153	Cla013153	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S3_0030263	S3_0030263	EST