WMU69371 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU69371
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr10 : 6502160 .. 6502779 (+)
Sequence length	239

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGATAATAGCATCACAATGATTATGTACTTCTAACCATTCCTGAAAGCTTATAAAATTTGGTTGAGTCTCCCTTTCAATGGCAAGTGCAGCCAAAGACTGAGCAAAGCTCTCAGTCTCAGCACAACTAATATCGACACAGACCAACTGCTGAGCACAACAGCAACATTTGCCACTGGAATCAACATTTGTTCTTTTCACTGTCCAACTTCCCTTCCCAATCCACCCCTTTCCATGCCAA

Library


Library category	ESTs
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU69371 vs. TAIR10
Match: AT2G32230.1 (AT2G32230.1 proteinaceous RNase P 1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-24
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHG+GW+G G W VKRT +D +G C CC ++LVC+DI+  ETE+FA SL  LA ERE + 
Sbjct: 320 WHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKA 379

Query: 62  NFISFQEWLEVHNHCDAII 121
           NF  FQEWLE H   DA+I
Sbjct: 380 NFNQFQEWLERHGPFDAVI 398

Query: 122  181
           
Sbjct: 440  398

Query: 182  239
           
Sbjct: 500  398

[Close]

BLAST of WMU69371 vs. TAIR10
Match: AT2G16650.1 (AT2G16650.1 proteinaceous RNase P 2)

HSP 1 Score: 97.1 bits (240), Expect = 5.3e-21
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHG GW+G+G WTVK+ NV S+G+C  C++QL CVD +  ET+ F  SL ALA++R+T+ 
Sbjct: 257 WHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKM 316

Query: 62  N-------FISFQEWLEVHNHCDAII 121
           N       F  FQ+WLE H   +AI+
Sbjct: 317 NSCETNVVFSEFQDWLEKHGDYEAIV 342

Query: 122  181
           
Sbjct: 377  342

Query: 182  239
           
Sbjct: 437  342

[Close]

BLAST of WMU69371 vs. TAIR10
Match: AT5G60430.1 (AT5G60430.1 drug transmembrane transporters;antiporters)

HSP 1 Score: 93.2 bits (230), Expect = 7.7e-20
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHG GW+G G W VK+ NV S+G+C  C++QL CVD +  ET+ F  SL ALA+ER+ + 
Sbjct: 13  WHGHGWVGDGKWIVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKM 72

Query: 62  N-------FISFQEWLEVHNHCDAII 121
           N       F  FQ+WLE H   +AI+
Sbjct: 73  NSCESDVVFSEFQDWLEKHGDYEAIV 98

Query: 122  181
           
Sbjct: 133  98

Query: 182  239
           
Sbjct: 193  98

[Close]

BLAST of WMU69371 vs. TAIR10
Match: AT4G21900.1 (AT4G21900.1 proteinaceous RNase P 3)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-19
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHG GW+G+G W VK+ NV S+GKC  C + L CVD +  ETE F  SL  LA+ER+ + 
Sbjct: 316 WHGLGWVGEGKWIVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKM 375

Query: 62  N-------FISFQEWLEVHNHCDAII 121
           N       F  FQEWLE H   +AI+
Sbjct: 376 NSCEPMADFSEFQEWLEKHGDYEAIL 401

Query: 122  181
           
Sbjct: 436  401

Query: 182  239
           
Sbjct: 496  401

[Close]

BLAST of WMU69371 vs. Swiss-Prot
Match: PRRP1_ARATH (Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.1e-23
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHG+GW+G G W VKRT +D +G C CC ++LVC+DI+  ETE+FA SL  LA ERE + 
Sbjct: 320 WHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKA 379

Query: 62  NFISFQEWLEVHNHCDAII 121
           NF  FQEWLE H   DA+I
Sbjct: 380 NFNQFQEWLERHGPFDAVI 398

Query: 122  181
           
Sbjct: 440  398

Query: 182  239
           
Sbjct: 500  398

[Close]

BLAST of WMU69371 vs. Swiss-Prot
Match: PRRP2_ARATH (Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.5e-20
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHG GW+G+G WTVK+ NV S+G+C  C++QL CVD +  ET+ F  SL ALA++R+T+ 
Sbjct: 257 WHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKM 316

Query: 62  N-------FISFQEWLEVHNHCDAII 121
           N       F  FQ+WLE H   +AI+
Sbjct: 317 NSCETNVVFSEFQDWLEKHGDYEAIV 342

Query: 122  181
           
Sbjct: 377  342

Query: 182  239
           
Sbjct: 437  342

[Close]

BLAST of WMU69371 vs. Swiss-Prot
Match: PRRP3_ARATH (Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-18
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHG GW+G+G W VK+ NV S+GKC  C + L CVD +  ETE F  SL  LA+ER+ + 
Sbjct: 316 WHGLGWVGEGKWIVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKM 375

Query: 62  N-------FISFQEWLEVHNHCDAII 121
           N       F  FQEWLE H   +AI+
Sbjct: 376 NSCEPMADFSEFQEWLEKHGDYEAIL 401

Query: 122  181
           
Sbjct: 436  401

Query: 182  239
           
Sbjct: 496  401

[Close]

BLAST of WMU69371 vs. NCBI nr
Match: gi|659083089|ref|XP_008442179.1| (PREDICTED: proteinaceous RNase P 2-like [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-36
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHGKGWIGKG+W VKRTNV S+GKCCCCAQQLVCVDISCAET++FAQSLAALAIERE QP
Sbjct: 241 WHGKGWIGKGNWVVKRTNVYSNGKCCCCAQQLVCVDISCAETDNFAQSLAALAIEREAQP 300

Query: 62  NFISFQEWLEVHNHCDAII 121
           NFISFQEWLEVHNHCDAI+
Sbjct: 301 NFISFQEWLEVHNHCDAIV 319

Query: 122  181
           
Sbjct: 361  319

Query: 182  239
           
Sbjct: 421  319

[Close]

BLAST of WMU69371 vs. NCBI nr
Match: gi|778695037|ref|XP_004151049.2| (PREDICTED: proteinaceous RNase P 2 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHGKGWIGKG+W VKRTNV SSGKCCCCAQQLV VDISCAETE+FAQSLAALAIERE QP
Sbjct: 241 WHGKGWIGKGNWVVKRTNVYSSGKCCCCAQQLVGVDISCAETENFAQSLAALAIEREAQP 300

Query: 62  NFISFQEWLEVHNHCDAII 121
           NFISFQEWLEVHNHCDAI+
Sbjct: 301 NFISFQEWLEVHNHCDAIV 319

Query: 122  181
           
Sbjct: 361  319

Query: 182  239
           
Sbjct: 421  319

[Close]

BLAST of WMU69371 vs. NCBI nr
Match: gi|700199678|gb|KGN54836.1| (hypothetical protein Csa_4G526560 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-26
Identity = 62/75 (82.67%), Postives = 64/75 (85.33%), Query Frame = -2


Query: 14  WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 73
           WHGKGWIGKG+W VKRTNV SSGKCCCCAQQLV VDISCAETE+FAQSLAALAIERE QP
Sbjct: 241 WHGKGWIGKGNWVVKRTNVYSSGKCCCCAQQLVGVDISCAETENFAQSLAALAIEREAQP 300

Query: 74  NFISFQEWLEVHNHC 133
           NFISFQ    V   C
Sbjct: 301 NFISFQVEAVVKELC 315

Query: 134  193
           
Sbjct: 361  315

Query: 194  239
           
Sbjct: 421  315

[Close]

BLAST of WMU69371 vs. NCBI nr
Match: gi|764543912|ref|XP_011459350.1| (PREDICTED: proteinaceous RNase P 2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-23
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHG+GWIGKG W V+R NVDS  KCC C + LVCVDI CAET+ FAQS+AALA+ERE + 
Sbjct: 235 WHGQGWIGKGDWDVQRANVDSESKCCSCGEHLVCVDIDCAETDRFAQSVAALAMEREVRL 294

Query: 62  NFISFQEWLEVHNHCDAII 121
           NF  FQ+WL+ H   +AI+
Sbjct: 295 NFSEFQDWLDKHADYEAIV 313

Query: 122  181
           
Sbjct: 355  313

Query: 182  239
           
Sbjct: 415  313

[Close]

BLAST of WMU69371 vs. NCBI nr
Match: gi|950954641|ref|XP_014496470.1| (PREDICTED: proteinaceous RNase P 2-like [Vigna radiata var. radiata])

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-22
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = -2


Query: 2   WHGKGWIGKGSWTVKRTNVDSSGKCCCCAQQLVCVDISCAETESFAQSLAALAIERETQP 61
           WHG+GW+GKG W V RT+V + G CCCC +QLVCVDI  AETE FA S+A LA+ERE + 
Sbjct: 238 WHGQGWVGKGDWAVSRTSVGADGHCCCCGEQLVCVDIDDAETEKFAGSVAGLALEREVKA 297

Query: 62  NFISFQEWLEVHNHCDAII 121
           NF  FQ WLE H+  +AI+
Sbjct: 298 NFSEFQAWLETHDSYEAIV 316

Query: 122  181
           
Sbjct: 358  316

Query: 182  239
           
Sbjct: 418  316

The following BLAST results are available for this feature:

BLAST of WMU69371 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32230.1	2.3e-24	58.23	proteinaceous RNase P 1	[more]
AT2G16650.1	5.3e-21	48.84	proteinaceous RNase P 2	[more]
AT5G60430.1	7.7e-20	47.67	drug transmembrane transporters;antiporters	[more]
AT4G21900.1	1.7e-19	48.84	proteinaceous RNase P 3	[more]

BLAST of WMU69371 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRRP1_ARATH	4.1e-23	58.23	Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=...	[more]
PRRP2_ARATH	9.5e-20	48.84	Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1	[more]
PRRP3_ARATH	3.0e-18	48.84	Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1	[more]

BLAST of WMU69371 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083089\|ref\|XP_008442179.1\|	2.5e-36	89.87	PREDICTED: proteinaceous RNase P 2-like [Cucumis melo]	[more]
gi\|778695037\|ref\|XP_004151049.2\|	1.2e-35	91.14	PREDICTED: proteinaceous RNase P 2 [Cucumis sativus]	[more]
gi\|700199678\|gb\|KGN54836.1\|	1.0e-26	82.67	hypothetical protein Csa_4G526560 [Cucumis sativus]	[more]
gi\|764543912\|ref\|XP_011459350.1\|	5.4e-23	63.29	PREDICTED: proteinaceous RNase P 2 [Fragaria vesca subsp. vesca]	[more]
gi\|950954641\|ref\|XP_014496470.1\|	3.5e-22	60.76	PREDICTED: proteinaceous RNase P 2-like [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla005261	Cla005261	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S3_0018640	S3_0018640	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13547	UNCHARACTERIZED	coord: 2..80 score: 3.5
None	No IPR available	PANTHER	PTHR13547:SF2	ANTIPORTER/ DRUG TRANSPORTER-RELATED	coord: 2..80 score: 3.5