WMU68432 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU68432
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 4797536 .. 4797967 (+)
Sequence length	444

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATCAATTCCACGGTGTGAGAATATAGATTCAGAATTTGGCAAAAGATACTTCATGGTGTTTTGAAGTAGATCTTCACCTCCTATCGGACTTCCAGCCAGGGCTCTGATCTGTGACACTCCTCCTCCTACCGCCGACACAGCAACATCACAATACCCAGCTCCCATGTTGAAAATAAGGGCAATTTTTTCACTTCCACTGCCCATGCCCTCATGTACAGCCTGCTGCTGTTGTTGAGCATATAATAAAGCTACTGCTGTTGGTTCAGGCATCAATCTAACTTGAAGTCCAGCCATTGCACAAGCTCGTTCAACCCGAGTAAGCTGAAATCGGCTGAATGAAACTGGAATTGTCAAAAACAACATTTTCTAATTGCCGCTTCAGTTGATATTCAGCCATCACTTTCAGTTCGACGATAAAGATTGCCAGAACTTACTTCTAGGAGT

Library


Library category	ESTs
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU68432 vs. TAIR10
Match: AT2G32120.1 (AT2G32120.1 heat-shock protein 70T-2)

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-31
Identity = 67/110 (60.91%), Postives = 77/110 (70.00%), Query Frame = -1


Query: 28  LTIPVSFSRFQLTRVERACAMAGLQV-RLMPEPTXXXXXXXXXXXXXXHEGMGSGSEKIA 87
           LT+PVSFSRFQLTR ERACAMAGL V RLMPEPT              H+ MGSGSE++A
Sbjct: 171 LTVPVSFSRFQLTRFERACAMAGLHVLRLMPEPTAIALLYAQQQQMTTHDNMGSGSERLA 230

Query: 88  LIFNMGAGYCDXXXXXXXXXXXQIRALAGSPIGGEDLLQNTMKYLLPNSE 147
           +IFNMGAGYCD           QI+ALAGSPIGGED+LQNT++++ P +E
Sbjct: 231 VIFNMGAGYCDVAVTATAGGVSQIKALAGSPIGGEDILQNTIRHIAPPNE 280

Query: 148  207
           
Sbjct: 291  280

Query: 208  267
           
Sbjct: 351  280

Query: 268  327
           
Sbjct: 411  280

Query: 328  355
           
Sbjct: 471  280

HSP 2 Score: 37.4 bits (85), Expect = 9.3e-03
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = -3


Query: 356 VLAIFIVELKVMAEYQLKRQLENVV 415
           VLAIF+VEL++MAE QLKR + NVV
Sbjct: 146 VLAIFLVELRLMAEAQLKRPVRNVV 170

Query: 416  431
           
Sbjct: 206  170

[Close]

BLAST of WMU68432 vs. Swiss-Prot
Match: HSP7H_ARATH (Heat shock 70 kDa protein 8 OS=Arabidopsis thaliana GN=HSP70-8 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.0e-30
Identity = 67/110 (60.91%), Postives = 77/110 (70.00%), Query Frame = -1


Query: 28  LTIPVSFSRFQLTRVERACAMAGLQV-RLMPEPTXXXXXXXXXXXXXXHEGMGSGSEKIA 87
           LT+PVSFSRFQLTR ERACAMAGL V RLMPEPT              H+ MGSGSE++A
Sbjct: 171 LTVPVSFSRFQLTRFERACAMAGLHVLRLMPEPTAIALLYAQQQQMTTHDNMGSGSERLA 230

Query: 88  LIFNMGAGYCDXXXXXXXXXXXQIRALAGSPIGGEDLLQNTMKYLLPNSE 147
           +IFNMGAGYCD           QI+ALAGSPIGGED+LQNT++++ P +E
Sbjct: 231 VIFNMGAGYCDVAVTATAGGVSQIKALAGSPIGGEDILQNTIRHIAPPNE 280

Query: 148  207
           
Sbjct: 291  280

Query: 208  267
           
Sbjct: 351  280

Query: 268  327
           
Sbjct: 411  280

Query: 328  355
           
Sbjct: 471  280

HSP 2 Score: 37.4 bits (85), Expect = 1.7e-01
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = -3


Query: 356 VLAIFIVELKVMAEYQLKRQLENVV 415
           VLAIF+VEL++MAE QLKR + NVV
Sbjct: 146 VLAIFLVELRLMAEAQLKRPVRNVV 170

Query: 416  431
           
Sbjct: 206  170

[Close]

BLAST of WMU68432 vs. NCBI nr
Match: gi|449432706|ref|XP_004134140.1| (PREDICTED: heat shock 70 kDa protein 8 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 4.3e-42
Identity = 91/118 (77.12%), Postives = 92/118 (77.97%), Query Frame = -1


Query: 1   LTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTXXXXXXXXXXXXXXHEGMGSGSEKIAL 60
           LTIPVSFSRFQLTRVERACAMAGLQVRLMPEPT              H+ MGSGSEKIAL
Sbjct: 169 LTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTAVALLYAQQQQQAVHDSMGSGSEKIAL 228

Query: 61  IFNMGAGYCDXXXXXXXXXXXQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGID 120
           IFNMGAGYCD           QIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGID
Sbjct: 229 IFNMGAGYCDVAVSAIGGGVSQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGID 286

Query: 121  180
           
Sbjct: 289  286

Query: 181  240
           
Sbjct: 349  286

Query: 241  300
           
Sbjct: 409  286

Query: 301  355
           
Sbjct: 469  286

[Close]

BLAST of WMU68432 vs. NCBI nr
Match: gi|659076443|ref|XP_008438682.1| (PREDICTED: heat shock 70 kDa protein 8 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-41
Identity = 90/118 (76.27%), Postives = 91/118 (77.12%), Query Frame = -1


Query: 1   LTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTXXXXXXXXXXXXXXHEGMGSGSEKIAL 60
           LTIPVSFSRFQLTRVERACAMAG QVRLMPEPT              H+ MGSGSEKIAL
Sbjct: 169 LTIPVSFSRFQLTRVERACAMAGFQVRLMPEPTAVALLYAQQQQQAAHDSMGSGSEKIAL 228

Query: 61  IFNMGAGYCDXXXXXXXXXXXQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGID 120
           IFNMGAGYCD           QIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGID
Sbjct: 229 IFNMGAGYCDAAVSAIGGGVSQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGID 286

Query: 121  180
           
Sbjct: 289  286

Query: 181  240
           
Sbjct: 349  286

Query: 241  300
           
Sbjct: 409  286

Query: 301  355
           
Sbjct: 469  286

[Close]

BLAST of WMU68432 vs. NCBI nr
Match: gi|970049917|ref|XP_015086476.1| (PREDICTED: heat shock 70 kDa protein 8 [Solanum pennellii])

HSP 1 Score: 152.1 bits (383), Expect = 7.4e-34
Identity = 77/119 (64.71%), Postives = 85/119 (71.43%), Query Frame = -1


Query: 1   LTIPVSFSRFQLTRVERACAMAGLQV-RLMPEPTXXXXXXXXXXXXXXHEGMGSGSEKIA 60
           LT+PVSFSRFQLTR+ERACAMAGL V RLMPEPT              HE MGSGSEKIA
Sbjct: 169 LTVPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSGHENMGSGSEKIA 228

Query: 61  LIFNMGAGYCDXXXXXXXXXXXQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGID 120
           LIFNMGAGYCD           QI+ALAGS +GGEDLLQN M YLLPN +++FS  GI+
Sbjct: 229 LIFNMGAGYCDVAITATAGGVSQIKALAGSTVGGEDLLQNLMHYLLPNMDNLFSSHGIE 287

Query: 121  180
           
Sbjct: 289  287

Query: 181  240
           
Sbjct: 349  287

Query: 241  300
           
Sbjct: 409  287

Query: 301  355
           
Sbjct: 469  287

[Close]

BLAST of WMU68432 vs. NCBI nr
Match: gi|565390146|ref|XP_006360807.1| (PREDICTED: heat shock 70 kDa protein 8 [Solanum tuberosum])

HSP 1 Score: 151.8 bits (382), Expect = 9.7e-34
Identity = 77/119 (64.71%), Postives = 84/119 (70.59%), Query Frame = -1


Query: 1   LTIPVSFSRFQLTRVERACAMAGLQV-RLMPEPTXXXXXXXXXXXXXXHEGMGSGSEKIA 60
           LT+PVSFSRFQLTR+ERACAMAGL V RLMPEPT              HE MGSGSEKIA
Sbjct: 169 LTVPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSGHENMGSGSEKIA 228

Query: 61  LIFNMGAGYCDXXXXXXXXXXXQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGID 120
           LIFNMGAGYCD           QI+ALAGS +GGEDLLQN M YLLPN + +FS  GI+
Sbjct: 229 LIFNMGAGYCDVAITATAGGVSQIKALAGSTVGGEDLLQNLMHYLLPNMDDLFSSHGIE 287

Query: 121  180
           
Sbjct: 289  287

Query: 181  240
           
Sbjct: 349  287

Query: 241  300
           
Sbjct: 409  287

Query: 301  355
           
Sbjct: 469  287

[Close]

BLAST of WMU68432 vs. NCBI nr
Match: gi|720000389|ref|XP_010256011.1| (PREDICTED: heat shock 70 kDa protein 8 [Nelumbo nucifera])

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-33
Identity = 75/118 (63.56%), Postives = 86/118 (72.88%), Query Frame = -1


Query: 4   LTIPVSFSRFQLTRVERACAMAGLQV-RLMPEPTXXXXXXXXXXXXXXHEGMGSGSEKIA 63
           LT+PVSFSRFQLTR+ERACAMAGL V RLMPEPT              HE MGSGSEKIA
Sbjct: 170 LTVPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQTLHENMGSGSEKIA 229

Query: 64  LIFNMGAGYCDXXXXXXXXXXXQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGI 123
           LIFNMGAGYCD           QI+AL+GS +GGED+LQN M Y++PN +S+FS+RGI
Sbjct: 230 LIFNMGAGYCDVTVTATAGGVSQIKALSGSAVGGEDILQNVMHYVMPNFDSLFSNRGI 287

Query: 124  183
           
Sbjct: 290  287

Query: 184  243
           
Sbjct: 350  287

Query: 244  303
           
Sbjct: 410  287

Query: 304  355
           
Sbjct: 470  287

The following BLAST results are available for this feature:

BLAST of WMU68432 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32120.1	2.8e-31	60.91	heat-shock protein 70T-2	[more]

BLAST of WMU68432 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HSP7H_ARATH	5.0e-30	60.91	Heat shock 70 kDa protein 8 OS=Arabidopsis thaliana GN=HSP70-8 PE=1 SV=1	[more]

BLAST of WMU68432 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432706\|ref\|XP_004134140.1\|	4.3e-42	77.12	PREDICTED: heat shock 70 kDa protein 8 [Cucumis sativus]	[more]
gi\|659076443\|ref\|XP_008438682.1\|	1.3e-41	76.27	PREDICTED: heat shock 70 kDa protein 8 [Cucumis melo]	[more]
gi\|970049917\|ref\|XP_015086476.1\|	7.4e-34	64.71	PREDICTED: heat shock 70 kDa protein 8 [Solanum pennellii]	[more]
gi\|565390146\|ref\|XP_006360807.1\|	9.7e-34	64.71	PREDICTED: heat shock 70 kDa protein 8 [Solanum tuberosum]	[more]
gi\|720000389\|ref\|XP_010256011.1\|	1.3e-33	63.56	PREDICTED: heat shock 70 kDa protein 8 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR013126	Hsp_70_fam

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021632	Cla021632	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0183576	S2_0183576	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013126	Heat shock protein 70 family	PFAM	PF00012	HSP70	coord: 2..119 score: 6.5
None	No IPR available	GENE3D	G3DSA:3.30.420.40		coord: 2..76 score: 2.1E-9coord: 77..116 score: 7.
None	No IPR available	PANTHER	PTHR19375	HEAT SHOCK PROTEIN 70KDA	coord: 1..121 score: 4.4
None	No IPR available	PANTHER	PTHR19375:SF101	HEAT SHOCK 70 KDA PROTEIN 8	coord: 1..121 score: 4.4
None	No IPR available	unknown	SSF53067	Actin-like ATPase domain	coord: 70..120 score: 2.1