WMU68234 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU68234
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 548718 .. 555993 (+)
Sequence length392
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ATCCATGGGTTAACTCGGTCGCACTCGGTCGCCGGAATTTTCTCTTAGCGCCTTCCAAACTGCGCTGTTACACTTGAATCCGGCTCCGAACGCCACCTGCCAGATCCGGTGGACCTTTCGTGACGCGATTCTTTGCTTCTGTATATGCCAATTCGTACCACAAGGAACTACTCGACGTGTTCCCAAATCGGTACAGTGTCATCCTCGAGGGTTCCATGTGCCACTCACTCAGTTGGAGGTTCTTCTGCAGAGCGTCCAGCACTGCTCTTCCGCCGGCATGGATGCAGAAATGCTCGAATGCGAGCTTAAAATCTGGGCTTTGCGAAGTAAAAACGGTTTCTCTCTTTGCAACAGCCTAAAAAACGAAAACTTCAATCAAGAGAATTGATGGC
Homology
[Close]
BLAST of WMU68234 vs. TAIR10
Match: AT2G26640.1 (AT2G26640.1 3-ketoacyl-CoA synthase 11)

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-31
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLD L+KNL+L+EWHMEPSRMTLYRFGNTSSSSLWYELAY+E
Sbjct: 391 PDFKLAFEHFCIHAGGRAVLDELEKNLKLTEWHMEPSRMTLYRFGNTSSSSLWYELAYSE 450

Query: 173 AKNRVTKG 232
           AK R+ KG
Sbjct: 451 AKGRIKKG 458

Query: 233  292
           
Sbjct: 511  458

Query: 293  317
           
Sbjct: 571  458


HSP 2 Score: 47.8 bits (112), Expect = 6.1e-06
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = -3 

Query: 43  RKVHRIWQVAFGAGFKCNSAVWKALR 102
           +K  RIWQ+AFG+GFKCNS+VW+A+R
Sbjct: 456 KKGDRIWQIAFGSGFKCNSSVWRAVR 481

Query: 103  121
           
Sbjct: 516  481

[Close]
BLAST of WMU68234 vs. TAIR10
Match: AT5G43760.1 (AT5G43760.1 3-ketoacyl-CoA synthase 20)

HSP 1 Score: 128.3 bits (321), Expect = 3.6e-30
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLD ++KNL LSEWHMEPSRMTL RFGNTSSSSLWYELAY+E
Sbjct: 407 PDFKLAFEHFCIHAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGNTSSSSLWYELAYSE 466

Query: 173 AKNRVTKG 232
           AK R+ +G
Sbjct: 467 AKGRIKRG 474

Query: 233  292
           
Sbjct: 527  474

Query: 293  317
           
Sbjct: 587  474


HSP 2 Score: 48.1 bits (113), Expect = 4.7e-06
Identity = 19/22 (86.36%), Postives = 19/22 (86.36%), Query Frame = -3 

Query: 43  RIWQVAFGAGFKCNSAVWKALR 102
           R WQ+AFG+GFKCNSAVWKALR
Sbjct: 476 RTWQIAFGSGFKCNSAVWKALR 497

Query: 103  109
           
Sbjct: 536  497

[Close]
BLAST of WMU68234 vs. TAIR10
Match: AT1G04220.1 (AT1G04220.1 3-ketoacyl-CoA synthase 2)

HSP 1 Score: 128.3 bits (321), Expect = 3.6e-30
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLD ++KNL LSEWHMEPSRMTL RFGNTSSSSLWYELAY+E
Sbjct: 399 PDFKLAFEHFCIHAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGNTSSSSLWYELAYSE 458

Query: 173 AKNRVTKG 232
           AK R+ +G
Sbjct: 459 AKGRIKRG 466

Query: 233  292
           
Sbjct: 519  466

Query: 293  317
           
Sbjct: 579  466


HSP 2 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = -3 

Query: 43  RIWQVAFGAGFKCNSAVWKALR 102
           R WQ+AFG+GFKCNSAVW+ALR
Sbjct: 468 RTWQIAFGSGFKCNSAVWRALR 489

Query: 103  109
           
Sbjct: 528  489

[Close]
BLAST of WMU68234 vs. TAIR10
Match: AT1G01120.1 (AT1G01120.1 3-ketoacyl-CoA synthase 1)

HSP 1 Score: 127.9 bits (320), Expect = 4.6e-30
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLD +QKNL L +WHMEPSRMTL+RFGNTSSSSLWYE+AYTE
Sbjct: 413 PDFKLAFEHFCIHAGGRAVLDEVQKNLDLKDWHMEPSRMTLHRFGNTSSSSLWYEMAYTE 472

Query: 173 AKNRVTKG 232
           AK RV  G
Sbjct: 473 AKGRVKAG 480

Query: 233  292
           
Sbjct: 533  480

Query: 293  317
           
Sbjct: 593  480


HSP 2 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = -3 

Query: 22  RIWQVAFGAGFKCNSAVWKALRENSGDRV 81
           R+WQ+AFG+GFKCNSAVWKALR  S + +
Sbjct: 482 RLWQIAFGSGFKCNSAVWKALRPVSTEEM 510

Query: 82   109
           
Sbjct: 542  510

[Close]
BLAST of WMU68234 vs. TAIR10
Match: AT2G16280.1 (AT2G16280.1 3-ketoacyl-CoA synthase 9)

HSP 1 Score: 118.6 bits (296), Expect = 2.8e-27
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAF+HFCIHAGGRAV+D L+KNLQLS+ H+E SRMTL+RFGNTSSSS+WYELAY E
Sbjct: 399 PDFKLAFDHFCIHAGGRAVIDELEKNLQLSQTHVEASRMTLHRFGNTSSSSIWYELAYIE 458

Query: 173 AKNRVTKG 232
           AK R+ KG
Sbjct: 459 AKGRMKKG 466

Query: 233  292
           
Sbjct: 519  466

Query: 293  317
           
Sbjct: 579  466


HSP 2 Score: 47.8 bits (112), Expect = 6.1e-06
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = -3 

Query: 13  RKVHRIWQVAFGAGFKCNSAVWKALRENSGDRVRPS 72
           +K +R+WQ+AFG+GFKCNSAVW AL     + V+PS
Sbjct: 464 KKGNRVWQIAFGSGFKCNSAVWVAL-----NNVKPS 494

Query: 73   121
           
Sbjct: 524  494

[Close]
BLAST of WMU68234 vs. Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-30
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLD L+KNL+L+EWHMEPSRMTLYRFGNTSSSSLWYELAY+E
Sbjct: 391 PDFKLAFEHFCIHAGGRAVLDELEKNLKLTEWHMEPSRMTLYRFGNTSSSSLWYELAYSE 450

Query: 173 AKNRVTKG 232
           AK R+ KG
Sbjct: 451 AKGRIKKG 458

Query: 233  292
           
Sbjct: 511  458

Query: 293  317
           
Sbjct: 571  458


HSP 2 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = -3 

Query: 43  RKVHRIWQVAFGAGFKCNSAVWKALR 102
           +K  RIWQ+AFG+GFKCNS+VW+A+R
Sbjct: 456 KKGDRIWQIAFGSGFKCNSSVWRAVR 481

Query: 103  121
           
Sbjct: 516  481

[Close]
BLAST of WMU68234 vs. Swiss-Prot
Match: KCS20_ARATH (3-ketoacyl-CoA synthase 20 OS=Arabidopsis thaliana GN=KCS20 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-29
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLD ++KNL LSEWHMEPSRMTL RFGNTSSSSLWYELAY+E
Sbjct: 407 PDFKLAFEHFCIHAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGNTSSSSLWYELAYSE 466

Query: 173 AKNRVTKG 232
           AK R+ +G
Sbjct: 467 AKGRIKRG 474

Query: 233  292
           
Sbjct: 527  474

Query: 293  317
           
Sbjct: 587  474


HSP 2 Score: 48.1 bits (113), Expect = 8.3e-05
Identity = 19/22 (86.36%), Postives = 19/22 (86.36%), Query Frame = -3 

Query: 43  RIWQVAFGAGFKCNSAVWKALR 102
           R WQ+AFG+GFKCNSAVWKALR
Sbjct: 476 RTWQIAFGSGFKCNSAVWKALR 497

Query: 103  109
           
Sbjct: 536  497

[Close]
BLAST of WMU68234 vs. Swiss-Prot
Match: KCS2_ARATH (3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-29
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLD ++KNL LSEWHMEPSRMTL RFGNTSSSSLWYELAY+E
Sbjct: 399 PDFKLAFEHFCIHAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGNTSSSSLWYELAYSE 458

Query: 173 AKNRVTKG 232
           AK R+ +G
Sbjct: 459 AKGRIKRG 466

Query: 233  292
           
Sbjct: 519  466

Query: 293  317
           
Sbjct: 579  466


HSP 2 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = -3 

Query: 43  RIWQVAFGAGFKCNSAVWKALR 102
           R WQ+AFG+GFKCNSAVW+ALR
Sbjct: 468 RTWQIAFGSGFKCNSAVWRALR 489

Query: 103  109
           
Sbjct: 528  489

[Close]
BLAST of WMU68234 vs. Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.2e-29
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLD +QKNL L +WHMEPSRMTL+RFGNTSSSSLWYE+AYTE
Sbjct: 413 PDFKLAFEHFCIHAGGRAVLDEVQKNLDLKDWHMEPSRMTLHRFGNTSSSSLWYEMAYTE 472

Query: 173 AKNRVTKG 232
           AK RV  G
Sbjct: 473 AKGRVKAG 480

Query: 233  292
           
Sbjct: 533  480

Query: 293  317
           
Sbjct: 593  480


HSP 2 Score: 49.7 bits (117), Expect = 2.8e-05
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = -3 

Query: 22  RIWQVAFGAGFKCNSAVWKALRENSGDRV 81
           R+WQ+AFG+GFKCNSAVWKALR  S + +
Sbjct: 482 RLWQIAFGSGFKCNSAVWKALRPVSTEEM 510

Query: 82   109
           
Sbjct: 542  510

[Close]
BLAST of WMU68234 vs. Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.0e-26
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAF+HFCIHAGGRAV+D L+KNLQLS+ H+E SRMTL+RFGNTSSSS+WYELAY E
Sbjct: 399 PDFKLAFDHFCIHAGGRAVIDELEKNLQLSQTHVEASRMTLHRFGNTSSSSIWYELAYIE 458

Query: 173 AKNRVTKG 232
           AK R+ KG
Sbjct: 459 AKGRMKKG 466

Query: 233  292
           
Sbjct: 519  466

Query: 293  317
           
Sbjct: 579  466


HSP 2 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = -3 

Query: 13  RKVHRIWQVAFGAGFKCNSAVWKALRENSGDRVRPS 72
           +K +R+WQ+AFG+GFKCNSAVW AL     + V+PS
Sbjct: 464 KKGNRVWQIAFGSGFKCNSAVWVAL-----NNVKPS 494

Query: 73   121
           
Sbjct: 524  494

[Close]
BLAST of WMU68234 vs. NCBI nr
Match: gi|449432002|ref|XP_004133789.1| (PREDICTED: 3-ketoacyl-CoA synthase 1 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE
Sbjct: 411 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 470

Query: 173 AKNRVTKG 232
           AKNRVTKG
Sbjct: 471 AKNRVTKG 478

Query: 233  292
           
Sbjct: 531  478

Query: 293  317
           
Sbjct: 591  478

[Close]
BLAST of WMU68234 vs. NCBI nr
Match: gi|659074853|ref|XP_008437832.1| (PREDICTED: 3-ketoacyl-CoA synthase 1 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE
Sbjct: 411 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 470

Query: 173 AKNRVTKG 232
           AKNRVTKG
Sbjct: 471 AKNRVTKG 478

Query: 233  292
           
Sbjct: 531  478

Query: 293  317
           
Sbjct: 591  478

[Close]
BLAST of WMU68234 vs. NCBI nr
Match: gi|1009142937|ref|XP_015888993.1| (PREDICTED: 3-ketoacyl-CoA synthase 1 [Ziziphus jujuba])

HSP 1 Score: 141.7 bits (356), Expect = 8.8e-31
Identity = 70/93 (75.27%), Postives = 76/93 (81.72%), Query Frame = -2 

Query: 113 LIEVFVF*AVAKRETVFTSQS----PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHME 172
           L E F+F     R  VF S+     PDFKLAFEHFCIHAGGRAVLD LQKNLQL+EWHME
Sbjct: 388 LSEQFLFFLTLIRRKVFNSKVKPYIPDFKLAFEHFCIHAGGRAVLDELQKNLQLTEWHME 447

Query: 173 PSRMTLYRFGNTSSSSLWYELAYTEAKNRVTKG 232
           PSRMTL+RFGNTSSSSLWYELAYTEAK RV++G
Sbjct: 448 PSRMTLHRFGNTSSSSLWYELAYTEAKGRVSRG 480

Query: 233  292
           
Sbjct: 508  480

Query: 293  352
           
Sbjct: 568  480

Query: 353  380
           
Sbjct: 628  480

[Close]
BLAST of WMU68234 vs. NCBI nr
Match: gi|703114496|ref|XP_010100669.1| (3-ketoacyl-CoA synthase 1 [Morus notabilis])

HSP 1 Score: 139.8 bits (351), Expect = 3.3e-30
Identity = 69/94 (73.40%), Postives = 74/94 (78.72%), Query Frame = -2 

Query: 113 LIEVFVF*AVAKRETVFTSQS-----PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHM 172
           L E F+F     R  +F +       PDFKLAFEHFCIHAGGRAVLD LQKNLQLSEWHM
Sbjct: 392 LSEQFLFFVTLIRRKLFNNSKVKPYIPDFKLAFEHFCIHAGGRAVLDELQKNLQLSEWHM 451

Query: 173 EPSRMTLYRFGNTSSSSLWYELAYTEAKNRVTKG 232
           EPSRMTL+RFGNTSSSSLWYELAYTEAK RV +G
Sbjct: 452 EPSRMTLHRFGNTSSSSLWYELAYTEAKGRVGRG 485

Query: 233  292
           
Sbjct: 512  485

Query: 293  352
           
Sbjct: 572  485

Query: 353  380
           
Sbjct: 632  485

[Close]
BLAST of WMU68234 vs. NCBI nr
Match: gi|357512625|ref|XP_003626601.1| (3-ketoacyl-CoA synthase-like protein [Medicago truncatula])

HSP 1 Score: 139.0 bits (349), Expect = 5.7e-30
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = -2 

Query: 113 PDFKLAFEHFCIHAGGRAVLDALQKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYTE 172
           PDFKLAFEHFCIHAGGRAVLD LQKNLQLSEWHMEPSRMTL+RFGNTSSSSLWYELAYTE
Sbjct: 414 PDFKLAFEHFCIHAGGRAVLDELQKNLQLSEWHMEPSRMTLHRFGNTSSSSLWYELAYTE 473

Query: 173 AKNRVTKG 232
           AK RV KG
Sbjct: 474 AKGRVAKG 481

Query: 233  292
           
Sbjct: 534  481

Query: 293  317
           
Sbjct: 594  481

The following BLAST results are available for this feature:
BLAST of WMU68234 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G26640.11.4e-3188.24 3-ketoacyl-CoA synthase 11[more]
AT5G43760.13.6e-3085.29 3-ketoacyl-CoA synthase 20[more]
AT1G04220.13.6e-3085.29 3-ketoacyl-CoA synthase 2[more]
AT1G01120.14.6e-3085.29 3-ketoacyl-CoA synthase 1[more]
AT2G16280.12.8e-2779.41 3-ketoacyl-CoA synthase 9[more]
BLAST of WMU68234 vs. Swiss-Prot
Match NameE-valueIdentityDescription
KCS11_ARATH2.6e-3088.243-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1[more]
KCS20_ARATH6.3e-2985.293-ketoacyl-CoA synthase 20 OS=Arabidopsis thaliana GN=KCS20 PE=2 SV=1[more]
KCS2_ARATH6.3e-2985.293-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=2[more]
KCS1_ARATH8.2e-2985.293-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1[more]
KCS9_ARATH5.0e-2679.413-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1[more]
BLAST of WMU68234 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432002|ref|XP_004133789.1|2.1e-32100.00PREDICTED: 3-ketoacyl-CoA synthase 1 [Cucumis sativus][more]
gi|659074853|ref|XP_008437832.1|2.1e-32100.00PREDICTED: 3-ketoacyl-CoA synthase 1 [Cucumis melo][more]
gi|1009142937|ref|XP_015888993.1|8.8e-3175.27PREDICTED: 3-ketoacyl-CoA synthase 1 [Ziziphus jujuba][more]
gi|703114496|ref|XP_010100669.1|3.3e-3073.403-ketoacyl-CoA synthase 1 [Morus notabilis][more]
gi|357512625|ref|XP_003626601.1|5.7e-3094.123-ketoacyl-CoA synthase-like protein [Medicago truncatula][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021116Cla021116gene
Cla021117Cla021117gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0179528S2_0179528EST