WMU67720 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU67720
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein of unknown function (DUF803)
Location	Chr5 : 9827228 .. 9827538 (+)
Sequence length	193

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATGGCCAGACTCACATTATGGTTTACATTGGTGTATGTTCCCTTGTAGGATCTTTGTTCGGTTATGAGTGTGAAAGCAATAGGAATTGCCTTGAAGCTAACGTTATCAGGAATGAACTAGCTAATATATCCTCAAACCTGGATATTTACTTTTAGTCGTGATTACTTGTGTGCTTACCCACGATGAATTATTT

Library


Library category	ESTs
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU67720 vs. TAIR10
Match: AT1G34470.1 (AT1G34470.1 Protein of unknown function (DUF803))

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-09
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 1


Query: 58  SVMSVKAIGIALKLTLSGMN*LIYPQTWIFT 117
           SVMSVKA+GIALKLT SGMN LIYPQTW+FT
Sbjct: 200 SVMSVKALGIALKLTFSGMNQLIYPQTWVFT 230

Query: 118  151
           
Sbjct: 260  230

HSP 2 Score: 38.5 bits (88), Expect = 1.8e-03
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3


Query: 3   GQTHIMVYIGVCSLVGSL 57
           GQ+H+MVYIGVCSLVGSL
Sbjct: 182 GQSHVMVYIGVCSLVGSL 199

[Close]

BLAST of WMU67720 vs. TAIR10
Match: AT1G71900.1 (AT1G71900.1 Protein of unknown function (DUF803))

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-08
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 1


Query: 28  LVYVPL*DLC---SVMSVKAIGIALKLTLSGMN*LIYPQTWIFT 87
           +VY+ +  L    SVMSVKA+GIALKLT SG N L YPQTWIFT
Sbjct: 187 MVYIGICSLVGSLSVMSVKALGIALKLTFSGTNQLFYPQTWIFT 230

Query: 88   147
           
Sbjct: 247  230

Query: 148  151
           
Sbjct: 307  230

HSP 2 Score: 37.0 bits (84), Expect = 5.2e-03
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 3


Query: 3   GQTHIMVYIGVCSLVGSL 57
           GQT++MVYIG+CSLVGSL
Sbjct: 182 GQTNVMVYIGICSLVGSL 199

[Close]

BLAST of WMU67720 vs. TAIR10
Match: AT4G09640.1 (AT4G09640.1 Protein of unknown function (DUF803))

HSP 1 Score: 52.4 bits (124), Expect = 1.2e-07
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 1


Query: 58  SVMSVKAIGIALKLTLSGMN*LIYPQTWIFT 117
           SVMSVKA+GIALKLT SG N L YPQTW+FT
Sbjct: 200 SVMSVKALGIALKLTFSGTNQLGYPQTWVFT 230

Query: 118  151
           
Sbjct: 260  230

HSP 2 Score: 38.1 bits (87), Expect = 2.3e-03
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 3


Query: 3   GQTHIMVYIGVCSLVGSL 57
           GQ+H+MVYIGVCSL+GSL
Sbjct: 182 GQSHVMVYIGVCSLIGSL 199

[Close]

BLAST of WMU67720 vs. TAIR10
Match: AT2G21120.1 (AT2G21120.1 Protein of unknown function (DUF803))

HSP 1 Score: 47.0 bits (110), Expect = 5.1e-06
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1


Query: 28  LVYVPL*DLC---SVMSVKAIGIALKLTLSGMN*LIYPQTWIF 87
           LVY+ +  L    +VMS+KAIGIA+KLT+ G++ + YPQTW+F
Sbjct: 173 LVYIGICSLMGALTVMSIKAIGIAIKLTMEGVSQIGYPQTWLF 215

Query: 88   147
           
Sbjct: 233  215

HSP 2 Score: 33.9 bits (76), Expect = 4.4e-02
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 3


Query: 3   GQTHIMVYIGVCSLVGSL 57
           GQT+I+VYIG+CSL+G+L
Sbjct: 168 GQTNILVYIGICSLMGAL 185

[Close]

BLAST of WMU67720 vs. TAIR10
Match: AT4G38730.1 (AT4G38730.1 Protein of unknown function (DUF803))

HSP 1 Score: 46.2 bits (108), Expect = 8.7e-06
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1


Query: 28  LVYVPL*DLC---SVMSVKAIGIALKLTLSGMN*LIYPQTWIF 87
           LVY+ +  L    +VMS+KA+GIA+KLT  G+N + YP+TW F
Sbjct: 173 LVYIGICSLMGSLTVMSIKAVGIAIKLTFEGINQIWYPETWFF 215

Query: 88   147
           
Sbjct: 233  215

HSP 2 Score: 35.0 bits (79), Expect = 2.0e-02
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3


Query: 3   GQTHIMVYIGVCSLVGSL 57
           GQT+I+VYIG+CSL+GSL
Sbjct: 168 GQTNILVYIGICSLMGSL 185

[Close]

BLAST of WMU67720 vs. Swiss-Prot
Match: NIPA3_ARATH (Probable magnesium transporter NIPA3 OS=Arabidopsis thaliana GN=At1g34470 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.1e-08
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 1


Query: 58  SVMSVKAIGIALKLTLSGMN*LIYPQTWIFT 117
           SVMSVKA+GIALKLT SGMN LIYPQTW+FT
Sbjct: 200 SVMSVKALGIALKLTFSGMNQLIYPQTWVFT 230

Query: 118  151
           
Sbjct: 260  230

HSP 2 Score: 38.5 bits (88), Expect = 3.2e-02
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3


Query: 3   GQTHIMVYIGVCSLVGSL 57
           GQ+H+MVYIGVCSLVGSL
Sbjct: 182 GQSHVMVYIGVCSLVGSL 199

[Close]

BLAST of WMU67720 vs. Swiss-Prot
Match: NIPA4_ARATH (Probable magnesium transporter NIPA4 OS=Arabidopsis thaliana GN=At1g71900 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-07
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 1


Query: 28  LVYVPL*DLC---SVMSVKAIGIALKLTLSGMN*LIYPQTWIFT 87
           +VY+ +  L    SVMSVKA+GIALKLT SG N L YPQTWIFT
Sbjct: 187 MVYIGICSLVGSLSVMSVKALGIALKLTFSGTNQLFYPQTWIFT 230

Query: 88   147
           
Sbjct: 247  230

Query: 148  151
           
Sbjct: 307  230

HSP 2 Score: 37.0 bits (84), Expect = 9.3e-02
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 3


Query: 3   GQTHIMVYIGVCSLVGSL 57
           GQT++MVYIG+CSLVGSL
Sbjct: 182 GQTNVMVYIGICSLVGSL 199

[Close]

BLAST of WMU67720 vs. Swiss-Prot
Match: NIPA5_ARATH (Probable magnesium transporter NIPA5 OS=Arabidopsis thaliana GN=At4g09640 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-06
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 1


Query: 58  SVMSVKAIGIALKLTLSGMN*LIYPQTWIFT 117
           SVMSVKA+GIALKLT SG N L YPQTW+FT
Sbjct: 200 SVMSVKALGIALKLTFSGTNQLGYPQTWVFT 230

Query: 118  151
           
Sbjct: 260  230

HSP 2 Score: 38.1 bits (87), Expect = 4.2e-02
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 3


Query: 3   GQTHIMVYIGVCSLVGSL 57
           GQ+H+MVYIGVCSL+GSL
Sbjct: 182 GQSHVMVYIGVCSLIGSL 199

[Close]

BLAST of WMU67720 vs. NCBI nr
Match: gi|778680310|ref|XP_011651286.1| (PREDICTED: probable magnesium transporter NIPA4 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1


Query: 58  SVMSVKAIGIALKLTLSGMN*LIYPQTWIFT 117
           SVMSVKAIGIALKLTLSGMN LIYPQTWIFT
Sbjct: 198 SVMSVKAIGIALKLTLSGMNQLIYPQTWIFT 228

Query: 118  151
           
Sbjct: 258  228

[Close]

BLAST of WMU67720 vs. NCBI nr
Match: gi|659112048|ref|XP_008456039.1| (PREDICTED: magnesium transporter NIPA2-like isoform X1 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1


Query: 58  SVMSVKAIGIALKLTLSGMN*LIYPQTWIFT 117
           SVMSVKAIGIALKLTLSGMN LIYPQTWIFT
Sbjct: 198 SVMSVKAIGIALKLTLSGMNQLIYPQTWIFT 228

Query: 118  151
           
Sbjct: 258  228

[Close]

BLAST of WMU67720 vs. NCBI nr
Match: gi|659112050|ref|XP_008456040.1| (PREDICTED: magnesium transporter NIPA2-like isoform X2 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1


Query: 58  SVMSVKAIGIALKLTLSGMN*LIYPQTWIFT 117
           SVMSVKAIGIALKLTLSGMN LIYPQTWIFT
Sbjct: 198 SVMSVKAIGIALKLTLSGMNQLIYPQTWIFT 228

Query: 118  151
           
Sbjct: 258  228

[Close]

BLAST of WMU67720 vs. NCBI nr
Match: gi|527208132|gb|EPS73206.1| (hypothetical protein M569_01549, partial [Genlisea aurea])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1


Query: 16  LWFTLVYVPL*DLCSVMSVKAIGIALKLTLSGMN*LIYPQTWIF 75
           +WF +    L    SVMSVKA+GIALKLTLSGMN LIYPQTW+F
Sbjct: 175 IWFYIGVCSLVGSLSVMSVKAVGIALKLTLSGMNQLIYPQTWVF 218

Query: 76   135
           
Sbjct: 235  218

Query: 136  148
           
Sbjct: 295  218

[Close]

BLAST of WMU67720 vs. NCBI nr
Match: gi|645223680|ref|XP_008218748.1| (PREDICTED: magnesium transporter NIPA2-like [Prunus mume])

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-06
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1


Query: 58  SVMSVKAIGIALKLTLSGMN*LIYPQTWIFT 117
           SVMSVKA+GIALKLTLSGMN L+YPQTW+FT
Sbjct: 204 SVMSVKALGIALKLTLSGMNQLVYPQTWVFT 234

Query: 118  151
           
Sbjct: 264  234

The following BLAST results are available for this feature:

BLAST of WMU67720 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34470.1	2.9e-09	87.10	Protein of unknown function (DUF803)	[more]
AT1G71900.1	2.5e-08	65.91	Protein of unknown function (DUF803)	[more]
AT4G09640.1	1.2e-07	80.65	Protein of unknown function (DUF803)	[more]
AT2G21120.1	5.1e-06	53.49	Protein of unknown function (DUF803)	[more]
AT4G38730.1	8.7e-06	51.16	Protein of unknown function (DUF803)	[more]

BLAST of WMU67720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NIPA3_ARATH	5.1e-08	87.10	Probable magnesium transporter NIPA3 OS=Arabidopsis thaliana GN=At1g34470 PE=2 S...	[more]
NIPA4_ARATH	4.4e-07	65.91	Probable magnesium transporter NIPA4 OS=Arabidopsis thaliana GN=At1g71900 PE=2 S...	[more]
NIPA5_ARATH	2.2e-06	80.65	Probable magnesium transporter NIPA5 OS=Arabidopsis thaliana GN=At4g09640 PE=2 S...	[more]

BLAST of WMU67720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680310\|ref\|XP_011651286.1\|	9.7e-07	96.77	PREDICTED: probable magnesium transporter NIPA4 [Cucumis sativus]	[more]
gi\|659112048\|ref\|XP_008456039.1\|	9.7e-07	96.77	PREDICTED: magnesium transporter NIPA2-like isoform X1 [Cucumis melo]	[more]
gi\|659112050\|ref\|XP_008456040.1\|	9.7e-07	96.77	PREDICTED: magnesium transporter NIPA2-like isoform X2 [Cucumis melo]	[more]
gi\|527208132\|gb\|EPS73206.1\|	1.3e-06	68.18	hypothetical protein M569_01549, partial [Genlisea aurea]	[more]
gi\|645223680\|ref\|XP_008218748.1\|	2.8e-06	87.10	PREDICTED: magnesium transporter NIPA2-like [Prunus mume]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla004304	Cla004304	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0170391	S2_0170391	EST