WMU66881 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU66881
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr10 : 1316597 .. 1317108 (+)
Sequence length	515

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTGCTATTTCGAATGGGTGATACCAACTGTCCACCACCAATATTCCCAGAGCGGTCACGAAATCCGAGATTATGTATGGTGTTTTCTGCCTTTGGGGTAACAGAACTAGTGTTCTCTGCCCCGAGTTTATCCATCAAATCTAGAAGAAACCTGGACTCGGTCGAAAAATCAATGCTTTCTGCTTTCATCACTGTTGATCTTACTCTCTGTTCATCACTAAAAGTCTCTTCCTTTATTTTCAACTTCATAATAAATTTTGTAAAAAGAACCTTACGGATGATTTCAGCAAATTTTCTCATCATCTTGTTCTTCGTATTTCAAATAATACAATCTTTTTGCAGGTATGCCCATGATCTCCTCACCACCTTCTTGAAATGCAGTTACCCAAGTTAAGCCAGTATGATCCTGTATTTGGAGCTGCAGTATGTACCTGTAGTCACATTCGTCAACAGACTGATCACACCTGTCACATCTCCATTTTCCATCTCCATTATTCGTAACCTTTTTGCTGCGTT

Library


Library category	ESTs
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU66881 vs. TAIR10
Match: AT5G45400.1 (AT5G45400.1 Replication factor-A protein 1-related)

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-31
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           SKKVTNNGDG WRC++CD+ VDECDYRYILQ+Q+QDHT LTW TAFQE GEEIMG+ AK 
Sbjct: 612 SKKVTNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKD 671

Query: 352 LYYLKYEEQDDEK 411
           LYY+KYE QD+EK
Sbjct: 672 LYYVKYENQDEEK 684

Query: 412  471
           
Sbjct: 732  684

Query: 472  511
           
Sbjct: 792  684

HSP 2 Score: 87.4 bits (215), Expect = 9.1e-18
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = -1


Query: 30  KDCII*NTKNKMMRKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTE 89
           KD      +N+   KF +IIR V FTK+I KLKIKEET+SDEQRV++TV+KAE +++S+ 
Sbjct: 670 KDLYYVKYENQDEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSN 729

Query: 90  SRFLLDLMDKLGAENTSSVTPKAENTIHNLGFRDRSGNIGGG 149
           +RF+L+ +DKL   + +S+  KAE++     +R  + N G G
Sbjct: 730 TRFMLEAIDKLKIGDANSLPIKAESS----NYRSDAFNSGVG 767

Query: 150  209
           
Sbjct: 790  767

Query: 210  269
           
Sbjct: 850  767

Query: 270  329
           
Sbjct: 910  767

Query: 330  336
           
Sbjct: 970  767

[Close]

BLAST of WMU66881 vs. TAIR10
Match: AT4G19130.1 (AT4G19130.1 Replication factor-A protein 1-related)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-29
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           SKKVT+NGDG WRC++CD+SVDECDYRYILQLQIQDHT LT VTAFQE GEEIMGI AK 
Sbjct: 542 SKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKD 601

Query: 352 LYYLKYEEQDDEK 411
           LYY+K E +D+EK
Sbjct: 602 LYYVKNEHKDEEK 614

Query: 412  471
           
Sbjct: 662  614

Query: 472  511
           
Sbjct: 722  614

HSP 2 Score: 80.9 bits (198), Expect = 8.5e-16
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = -1


Query: 69  KDCII*NTKNKMMRKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTE 128
           KD      ++K   KF +IIRKV FTK+  KLK+KEETFSDEQRV++TV+K + +++S +
Sbjct: 600 KDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDKLNYSAD 659

Query: 129 SRFLLDLMDKLGAENTSSVTPKAENTIHN 188
           +R +L  MDKL   + +S+    E + +N
Sbjct: 660 TRTMLGAMDKLRTRDANSLPINPEGSDYN 688

Query: 189  248
           
Sbjct: 720  688

Query: 249  308
           
Sbjct: 780  688

Query: 309  336
           
Sbjct: 840  688

[Close]

BLAST of WMU66881 vs. TAIR10
Match: AT2G06510.1 (AT2G06510.1 replication protein A 1A)

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-27
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           +KKVT +G  +W CDRC+Q  DECDYRY+LQ+QIQDHTGLTW+TAFQE GEEIMG PAK+
Sbjct: 513 NKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKK 572

Query: 352 LYYLKYEEQDDEK 411
           LY +KYE + +E+
Sbjct: 573 LYAMKYELEKEEE 585

Query: 412  471
           
Sbjct: 633  585

Query: 472  511
           
Sbjct: 693  585

HSP 2 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 27/54 (50.00%), Postives = 45/54 (83.33%), Query Frame = -1


Query: 132 KFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTESRFLLDLM 191
           +FAEI+R  LF ++++KLKIKEE++ DEQRV+ TV+K + +++++ES+++LDL+
Sbjct: 585 EFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDKVNYTSESKYMLDLL 638

Query: 192  251
           
Sbjct: 645  638

Query: 252  294
           
Sbjct: 705  638

[Close]

BLAST of WMU66881 vs. TAIR10
Match: AT5G08020.1 (AT5G08020.1 RPA70-kDa subunit B)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = -3


Query: 307 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 366
           +KKVT   D  + C+ C +   EC  RYI+ +++ D TG TW++AF +  E+I+G  A  
Sbjct: 472 NKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADD 531

Query: 367 LYYLKYEE 426
           L  LK EE
Sbjct: 532 LNDLKSEE 539

Query: 427  486
           
Sbjct: 592  539

Query: 487  511
           
Sbjct: 652  539

[Close]

BLAST of WMU66881 vs. TAIR10
Match: AT5G61000.1 (AT5G61000.1 Replication factor-A protein 1-related)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = -3


Query: 307 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 366
           +KKVT   D  + C+ C +  +EC  RYI+ +++ D +G TW+++F +  E+I+G  A  
Sbjct: 496 NKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADE 555

Query: 367 LYYLKYEE 426
           L  LK EE
Sbjct: 556 LNKLKSEE 563

Query: 427  486
           
Sbjct: 616  563

Query: 487  511
           
Sbjct: 676  563

[Close]

BLAST of WMU66881 vs. Swiss-Prot
Match: RFA1C_ARATH (Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana GN=RPA1C PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-30
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           SKKVTNNGDG WRC++CD+ VDECDYRYILQ+Q+QDHT LTW TAFQE GEEIMG+ AK 
Sbjct: 612 SKKVTNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKD 671

Query: 352 LYYLKYEEQDDEK 411
           LYY+KYE QD+EK
Sbjct: 672 LYYVKYENQDEEK 684

Query: 412  471
           
Sbjct: 732  684

Query: 472  511
           
Sbjct: 792  684

HSP 2 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = -1


Query: 30  KDCII*NTKNKMMRKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTE 89
           KD      +N+   KF +IIR V FTK+I KLKIKEET+SDEQRV++TV+KAE +++S+ 
Sbjct: 670 KDLYYVKYENQDEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSN 729

Query: 90  SRFLLDLMDKLGAENTSSVTPKAENTIHNLGFRDRSGNIGGG 149
           +RF+L+ +DKL   + +S+  KAE++     +R  + N G G
Sbjct: 730 TRFMLEAIDKLKIGDANSLPIKAESS----NYRSDAFNSGVG 767

Query: 150  209
           
Sbjct: 790  767

Query: 210  269
           
Sbjct: 850  767

Query: 270  329
           
Sbjct: 910  767

Query: 330  336
           
Sbjct: 970  767

[Close]

BLAST of WMU66881 vs. Swiss-Prot
Match: RFA1E_ARATH (Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana GN=RPA1E PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           SKKVT+NGDG WRC++CD+SVDECDYRYILQLQIQDHT LT VTAFQE GEEIMGI AK 
Sbjct: 542 SKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKD 601

Query: 352 LYYLKYEEQDDEK 411
           LYY+K E +D+EK
Sbjct: 602 LYYVKNEHKDEEK 614

Query: 412  471
           
Sbjct: 662  614

Query: 472  511
           
Sbjct: 722  614

HSP 2 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = -1


Query: 69  KDCII*NTKNKMMRKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTE 128
           KD      ++K   KF +IIRKV FTK+  KLK+KEETFSDEQRV++TV+K + +++S +
Sbjct: 600 KDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDKLNYSAD 659

Query: 129 SRFLLDLMDKLGAENTSSVTPKAENTIHN 188
           +R +L  MDKL   + +S+    E + +N
Sbjct: 660 TRTMLGAMDKLRTRDANSLPINPEGSDYN 688

Query: 189  248
           
Sbjct: 720  688

Query: 249  308
           
Sbjct: 780  688

Query: 309  336
           
Sbjct: 840  688

[Close]

BLAST of WMU66881 vs. Swiss-Prot
Match: RFA1A_ARATH (Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana GN=RPA1A PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-25
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           +KKVT +G  +W CDRC+Q  DECDYRY+LQ+QIQDHTGLTW+TAFQE GEEIMG PAK+
Sbjct: 513 NKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKK 572

Query: 352 LYYLKYEEQDDEK 411
           LY +KYE + +E+
Sbjct: 573 LYAMKYELEKEEE 585

Query: 412  471
           
Sbjct: 633  585

Query: 472  511
           
Sbjct: 693  585

HSP 2 Score: 66.2 bits (160), Expect = 3.9e-10
Identity = 27/54 (50.00%), Postives = 45/54 (83.33%), Query Frame = -1


Query: 132 KFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTESRFLLDLM 191
           +FAEI+R  LF ++++KLKIKEE++ DEQRV+ TV+K + +++++ES+++LDL+
Sbjct: 585 EFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDKVNYTSESKYMLDLL 638

Query: 192  251
           
Sbjct: 645  638

Query: 252  294
           
Sbjct: 705  638

[Close]

BLAST of WMU66881 vs. Swiss-Prot
Match: RFA1A_ORYSJ (Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica GN=RPA1A PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-18
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -3


Query: 307 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 366
           +KKVT + +G W CD+CD+  +ECDYRY+LQ QIQDH+G  WVTAFQE G+E++G  A  
Sbjct: 526 NKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATE 585

Query: 367 LYYLKYEE 426
           L  LK  E
Sbjct: 586 LNALKERE 593

Query: 427  486
           
Sbjct: 646  593

Query: 487  511
           
Sbjct: 706  593

HSP 2 Score: 61.6 bits (148), Expect = 9.5e-09
Identity = 26/59 (44.07%), Postives = 43/59 (72.88%), Query Frame = -1


Query: 117 KFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTESRFLLDLMDKLGA 176
           +FA+ +   LF +++++LK+KEE++ DE++V++T +K E +D S ES+FLLDL+ K  A
Sbjct: 596 RFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFLLDLISKSSA 654

Query: 177  236
           
Sbjct: 656  654

Query: 237  294
           
Sbjct: 716  654

[Close]

BLAST of WMU66881 vs. Swiss-Prot
Match: RFA1C_ORYSJ (Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-17
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = -3


Query: 298 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 357
           +KK  NNGDG W CDRCD+S    +YRY+L+ QIQDHTG T+ +AF E GE+I G  A  
Sbjct: 623 NKKAINNGDGMWHCDRCDESFQNPEYRYMLRFQIQDHTGSTYASAFDEAGEQIFGRKAGE 682

Query: 358 LYYLKYEEQDD 417
           L+ ++  +QDD
Sbjct: 683 LFSIRNVDQDD 693

Query: 418  477
           
Sbjct: 743  693

Query: 478  511
           
Sbjct: 803  693

HSP 2 Score: 59.3 bits (142), Expect = 4.7e-08
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = -1


Query: 36  KFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTESRFLLDLMDKLGAE 95
           +FAEII  V +  ++ KLK+KEET++DEQ ++ T +K E +D S ES  LL  +D L   
Sbjct: 695 QFAEIIEGVRWHLYLFKLKVKEETYNDEQSLKCTAVKVEKLDPSKESNVLLGAIDNL--- 754

Query: 96  NTSSVTPKAENTI-HNLGFRDRSGNIG 155
               + PK ++ +  N GF D  G  G
Sbjct: 755 ---LLDPKGQSDLAPNAGFTDPVGGHG 775

Query: 156  215
           
Sbjct: 815  775

Query: 216  275
           
Sbjct: 875  775

Query: 276  294
           
Sbjct: 935  775

[Close]

BLAST of WMU66881 vs. NCBI nr
Match: gi|449456771|ref|XP_004146122.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR
Sbjct: 580 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 639

Query: 352 LYYLKYEEQDDEK 411
           LYYLKYEEQDDEK
Sbjct: 640 LYYLKYEEQDDEK 652

Query: 412  471
           
Sbjct: 700  652

Query: 472  511
           
Sbjct: 760  652

[Close]

BLAST of WMU66881 vs. NCBI nr
Match: gi|659095462|ref|XP_008448593.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR
Sbjct: 580 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 639

Query: 352 LYYLKYEEQDDEK 411
           LYYLKYEEQDDEK
Sbjct: 640 LYYLKYEEQDDEK 652

Query: 412  471
           
Sbjct: 700  652

Query: 472  511
           
Sbjct: 760  652

[Close]

BLAST of WMU66881 vs. NCBI nr
Match: gi|645265749|ref|XP_008238296.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Prunus mume])

HSP 1 Score: 152.1 bits (383), Expect = 8.6e-34
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           SKKVTNNGDGKWRCDRCDQS++ECDYRY+LQLQIQDHTG TWVTAFQEGGEEIMGIPAK 
Sbjct: 563 SKKVTNNGDGKWRCDRCDQSMEECDYRYLLQLQIQDHTGTTWVTAFQEGGEEIMGIPAKD 622

Query: 352 LYYLKYEEQDDEK 411
           LY+LKYEEQDDEK
Sbjct: 623 LYFLKYEEQDDEK 635

Query: 412  471
           
Sbjct: 683  635

Query: 472  511
           
Sbjct: 743  635

[Close]

BLAST of WMU66881 vs. NCBI nr
Match: gi|595860173|ref|XP_007211093.1| (hypothetical protein PRUPE_ppa001396mg [Prunus persica])

HSP 1 Score: 152.1 bits (383), Expect = 8.6e-34
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           SKKVTNNGDGKWRCDRCDQS++ECDYRY+LQLQIQDHTG TWVTAFQEGGEEIMGIPAK 
Sbjct: 541 SKKVTNNGDGKWRCDRCDQSMEECDYRYLLQLQIQDHTGTTWVTAFQEGGEEIMGIPAKD 600

Query: 352 LYYLKYEEQDDEK 411
           LY+LKYEEQDDEK
Sbjct: 601 LYFLKYEEQDDEK 613

Query: 412  471
           
Sbjct: 661  613

Query: 472  511
           
Sbjct: 721  613

[Close]

BLAST of WMU66881 vs. NCBI nr
Match: gi|604333136|gb|EYU37527.1| (hypothetical protein MIMGU_mgv1a023226mg [Erythranthe guttata])

HSP 1 Score: 151.0 bits (380), Expect = 1.9e-33
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = -3


Query: 292 SKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKR 351
           SKKVTNNGDGKWRC+RCDQ VDECDYRYILQ+QIQDHTGLTWVTAFQE GE+IMGIPAK 
Sbjct: 417 SKKVTNNGDGKWRCERCDQVVDECDYRYILQMQIQDHTGLTWVTAFQESGEDIMGIPAKD 476

Query: 352 LYYLKYEEQDDEK 411
           LYYLKYEEQDDEK
Sbjct: 477 LYYLKYEEQDDEK 489

Query: 412  471
           
Sbjct: 537  489

Query: 472  511
           
Sbjct: 597  489

The following BLAST results are available for this feature:

BLAST of WMU66881 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45400.1	2.5e-31	78.08	Replication factor-A protein 1-related	[more]
AT4G19130.1	1.4e-29	79.45	Replication factor-A protein 1-related	[more]
AT2G06510.1	6.3e-27	68.49	replication protein A 1A	[more]
AT5G08020.1	2.0e-09	41.18	RPA70-kDa subunit B	[more]
AT5G61000.1	2.0e-09	38.24	Replication factor-A protein 1-related	[more]

BLAST of WMU66881 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RFA1C_ARATH	4.4e-30	78.08	Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana GN=RP...	[more]
RFA1E_ARATH	2.4e-28	79.45	Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana GN=RP...	[more]
RFA1A_ARATH	1.1e-25	68.49	Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana GN=RP...	[more]
RFA1A_ORYSJ	3.0e-18	57.35	Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japoni...	[more]
RFA1C_ORYSJ	5.6e-17	53.52	Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japoni...	[more]

BLAST of WMU66881 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456771\|ref\|XP_004146122.1\|	1.1e-36	100.00	PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis sativus]	[more]
gi\|659095462\|ref\|XP_008448593.1\|	1.1e-36	100.00	PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis melo]	[more]
gi\|645265749\|ref\|XP_008238296.1\|	8.6e-34	91.78	PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Prunus mume]	[more]
gi\|595860173\|ref\|XP_007211093.1\|	8.6e-34	91.78	hypothetical protein PRUPE_ppa001396mg [Prunus persica]	[more]
gi\|604333136\|gb\|EYU37527.1\|	1.9e-33	91.78	hypothetical protein MIMGU_mgv1a023226mg [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR013955	Rep_factor-A_C

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla008863	Cla008863	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0154198	S2_0154198	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 12..123 score: 3.2
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 12..123 score: 3.77
IPR013955	Replication factor A, C-terminal	PFAM	PF08646	Rep_fac-A_C	coord: 12..116 score: 1.1
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 12..151 score: 1.7
None	No IPR available	PANTHER	PTHR23273:SF12	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED	coord: 12..151 score: 1.7