WMU66390 (transcribed_cluster) Watermelon (97103) v1

NameWMU66390
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr2 : 1987989 .. 1998768 (+)
Sequence length210
The following sequences are available for this feature:

transcribed_cluster sequence

TCGTTCACAAGTCCCCAAGTCAACTGAGTTTTCATATTTATGTTCATTCAGGCCTGCATCTTGAAGCAACTGAGACAATGCACGATAAGGGTGGAATACTACCAAATAATAGTCAAGGGCTTCTAAAATTTTCATTTCCATTTCCAGTATGTGTTTGATCTCATACTTGTACTTTTCATCAGATTGTATTTTTTTAATGTAAACACTGAG
BLAST of WMU66390 vs. TAIR10
Match: AT5G48630.2 (AT5G48630.2 Cyclin family protein)

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-17
Identity = 37/56 (66.07%), Postives = 48/56 (85.71%), Query Frame = -1

Query: 43  LSVYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLNE 102
           L  Y+KK+ +DEK++YEIK ILEMEMK+LEAL++YLVVFHPYR+L + LQD+G+N+
Sbjct: 110 LVFYMKKLYADEKFRYEIKDILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGIND 165

Query: 103 162
           
Sbjct: 170 165

Query: 163 211
           
Sbjct: 230 165

BLAST of WMU66390 vs. TAIR10
Match: AT5G48640.1 (AT5G48640.1 Cyclin family protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-16
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = -1

Query: 43  LSVYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLNE 102
           L  YIK++  DE  KYE+K IL MEMK+LEALDYYLVVFHPYR+LS+ LQDA LN+
Sbjct: 107 LVFYIKRLYPDEYNKYELKDILGMEMKVLEALDYYLVVFHPYRSLSEFLQDAALND 162

Query: 103 162
           
Sbjct: 167 162

Query: 163 211
           
Sbjct: 227 162

BLAST of WMU66390 vs. Swiss-Prot
Match: CCC12_ARATH (Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-16
Identity = 37/56 (66.07%), Postives = 48/56 (85.71%), Query Frame = -1

Query: 43  LSVYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLNE 102
           L  Y+KK+ +DEK++YEIK ILEMEMK+LEAL++YLVVFHPYR+L + LQD+G+N+
Sbjct: 107 LVFYMKKLYADEKFRYEIKDILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGIND 162

Query: 103 162
           
Sbjct: 167 162

Query: 163 211
           
Sbjct: 227 162

BLAST of WMU66390 vs. Swiss-Prot
Match: CCC11_ORYSJ (Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.3e-16
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = -1

Query: 43  LSVYIKKI-QSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLNE 102
           L  YIKK+  SDEKY++EIK ILEMEMK+LEALDYYLVV+HPYR L QLLQDAG+ +
Sbjct: 107 LVFYIKKMCASDEKYRFEIKDILEMEMKLLEALDYYLVVYHPYRPLLQLLQDAGITD 163

Query: 103 162
           
Sbjct: 167 163

Query: 163 211
           
Sbjct: 227 163

BLAST of WMU66390 vs. Swiss-Prot
Match: CCC11_ARATH (Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-15
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = -1

Query: 43  LSVYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLNE 102
           L  YIK++  DE  KYE+K IL MEMK+LEALDYYLVVFHPYR+LS+ LQDA LN+
Sbjct: 107 LVFYIKRLYPDEYNKYELKDILGMEMKVLEALDYYLVVFHPYRSLSEFLQDAALND 162

Query: 103 162
           
Sbjct: 167 162

Query: 163 211
           
Sbjct: 227 162

BLAST of WMU66390 vs. NCBI nr
Match: gi|449459194|ref|XP_004147331.1| (PREDICTED: cyclin-C1-1 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 6.4e-20
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = -1

Query: 43  LSVYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLNE 102
           L  YIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLN+
Sbjct: 107 LVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLND 162

Query: 103 162
           
Sbjct: 167 162

Query: 163 211
           
Sbjct: 227 162

BLAST of WMU66390 vs. NCBI nr
Match: gi|700207114|gb|KGN62233.1| (hypothetical protein Csa_2G337780 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 6.4e-20
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = -1

Query: 43  LSVYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLNE 102
           L  YIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLN+
Sbjct: 107 LVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLND 162

Query: 103 162
           
Sbjct: 167 162

Query: 163 211
           
Sbjct: 227 162

BLAST of WMU66390 vs. NCBI nr
Match: gi|802546550|ref|XP_012085454.1| (PREDICTED: cyclin-C1-2-like isoform X1 [Jatropha curcas])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-16
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = -1

Query: 43  LSVYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLNE 102
           L  YIKK+ SDEKY+YEIK ILEMEMKILEAL+YYLVVFHPYR+LSQLLQDAG+N+
Sbjct: 107 LVFYIKKLYSDEKYRYEIKDILEMEMKILEALNYYLVVFHPYRSLSQLLQDAGIND 162

Query: 103 162
           
Sbjct: 167 162

Query: 163 211
           
Sbjct: 227 162

BLAST of WMU66390 vs. NCBI nr
Match: gi|802546552|ref|XP_012085462.1| (PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-16
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = -1

Query: 43  LSVYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLNE 102
           L  YIKK+ SDEKY+YEIK ILEMEMKILEAL+YYLVVFHPYR+LSQLLQDAG+N+
Sbjct: 66  LVFYIKKLYSDEKYRYEIKDILEMEMKILEALNYYLVVFHPYRSLSQLLQDAGIND 121

Query: 103 162
           
Sbjct: 126 121

Query: 163 211
           
Sbjct: 186 121

BLAST of WMU66390 vs. NCBI nr
Match: gi|763741112|gb|KJB08611.1| (hypothetical protein B456_001G104300 [Gossypium raimondii])

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-16
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = -1

Query: 43  LSVYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQLLQDAGLNE 102
           L  YIKK+ SDEKY+YEIK ILEMEMKILEAL+YYLVVFHPYR L+QLLQDAG+N+
Sbjct: 39  LVFYIKKLNSDEKYRYEIKEILEMEMKILEALNYYLVVFHPYRTLAQLLQDAGIND 94

Query: 103 162
           
Sbjct: 99  94

Query: 163 211
           
Sbjct: 159 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G48630.21.9e-1766.07 Cyclin family protein[more]
AT5G48640.11.2e-1669.64 Cyclin family protein[more]
Match NameE-valueIdentityDescription
CCC12_ARATH3.3e-1666.07Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1[more]
CCC11_ORYSJ4.3e-1673.68Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1[more]
CCC11_ARATH2.1e-1569.64Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
gi|449459194|ref|XP_004147331.1|6.4e-2094.64PREDICTED: cyclin-C1-1 [Cucumis sativus][more]
gi|700207114|gb|KGN62233.1|6.4e-2094.64hypothetical protein Csa_2G337780 [Cucumis sativus][more]
gi|802546550|ref|XP_012085454.1|1.9e-1682.14PREDICTED: cyclin-C1-2-like isoform X1 [Jatropha curcas][more]
gi|802546552|ref|XP_012085462.1|1.9e-1682.14PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas][more]
gi|763741112|gb|KJB08611.1|3.3e-1680.36hypothetical protein B456_001G104300 [Gossypium raimondii][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR013763Cyclin-like

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla007857Cla007857gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0144918S2_0144918EST


Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013763Cyclin-likeGENE3DG3DSA:1.10.472.10coord: 5..52
score: 1.9
IPR013763Cyclin-likeunknownSSF47954Cyclin-likecoord: 5..38
score: 4.1