WMU65470 (transcribed_cluster) Watermelon (97103) v1

NameWMU65470
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr10 : 1253488 .. 1253727 (-)
Sequence length243
The following sequences are available for this feature:

transcribed_cluster sequence

TACACAAATCAAGAAACCGCCAACGACAATAACTTATTAAAGCTCTAAGTATTTGAGTTTTCCATCGAAGCCAGGCATAGGATTCCACACACGAACGCGAAACAAGATGGGATTCGACACGTACCGAAGCAGAGCACTCCACACGTGCCAAACACCAACCAGAAGAAACAGCGTCCCTGGAAGAACATGACCCCTTAAAAGATCCCATATCTTCAAAAGCGCTTTTACCACTCTATTTCTCCG
BLAST of WMU65470 vs. TAIR10
Match: AT1G32120.1 (AT1G32120.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-20
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = -1

Query: 1    RGHVLPGTLFLLVGVWHVWSALLRYVSNPILFRVRVWNPMPGFDGKLKYLEL**VIVVGG 60
            +GH LPGTLFL+VGVWH+WS+++RY+SNP  FRVRVW+P+PGF+ ++KYLEL  V+ +G 
Sbjct: 947  KGHALPGTLFLVVGVWHIWSSVVRYISNPSSFRVRVWHPVPGFNDRIKYLEL-YVVTIGS 1006

Query: 61   FL-ICV 120
            F+ +C+
Sbjct: 1007 FIDLCI 1011

Query: 121  180
            
Sbjct: 1067 1011

Query: 181  196
            
Sbjct: 1127 1011

BLAST of WMU65470 vs. NCBI nr
Match: gi|449456761|ref|XP_004146117.1| (PREDICTED: transmembrane protein 45B [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-24
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = -1

Query: 1   RGHVLPGTLFLLVGVWHVWSALLRYVSNPILFRVRVWNPMPGFDGKLKYLEL**VIVVGG 60
           +GHVLPGTLFLLVGVWHVWSALLRYV NP LFRVRVWNPMPGFDGKLKYLEL  VIV+GG
Sbjct: 5   KGHVLPGTLFLLVGVWHVWSALLRYVLNPSLFRVRVWNPMPGFDGKLKYLEL-YVIVIGG 64

Query: 61  FL-ICV 120
           F+ +C+
Sbjct: 65  FIDLCI 69

Query: 121 180
           
Sbjct: 125 69

Query: 181 196
           
Sbjct: 185 69

BLAST of WMU65470 vs. NCBI nr
Match: gi|659095474|ref|XP_008448600.1| (PREDICTED: transmembrane protein 45B [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-24
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = -1

Query: 1   RGHVLPGTLFLLVGVWHVWSALLRYVSNPILFRVRVWNPMPGFDGKLKYLEL**VIVVGG 60
           +GHVLPGTLFLLVGVWHVWSALLRYV NP LFRVRVWNPMPGFDGKLKYLEL  VIV+GG
Sbjct: 5   KGHVLPGTLFLLVGVWHVWSALLRYVLNPSLFRVRVWNPMPGFDGKLKYLEL-YVIVIGG 64

Query: 61  FL-ICV 120
           F+ +C+
Sbjct: 65  FIDLCI 69

Query: 121 180
           
Sbjct: 125 69

Query: 181 196
           
Sbjct: 185 69

BLAST of WMU65470 vs. NCBI nr
Match: gi|641819952|gb|KDO40079.1| (hypothetical protein CISIN_1g023730mg [Citrus sinensis])

HSP 1 Score: 107.8 bits (268), Expect = 8.8e-21
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = -1

Query: 1   GHVLPGTLFLLVGVWHVWSALLRYVSNPILFRVRVWNPMPGFDGKLKYLEL**VIVVGGF 60
           GHVLPGTLFLLVGVWH+WSA++R+VSNP  FRVRVWNP+PGFDGKLKY+EL  VIV+G F
Sbjct: 6   GHVLPGTLFLLVGVWHIWSAVVRHVSNPKSFRVRVWNPVPGFDGKLKYMEL-YVIVIGAF 65

Query: 61  L-ICV 120
           + +C+
Sbjct: 66  IDMCI 69

Query: 121 180
           
Sbjct: 126 69

Query: 181 193
           
Sbjct: 186 69

BLAST of WMU65470 vs. NCBI nr
Match: gi|567880063|ref|XP_006432590.1| (hypothetical protein CICLE_v10002116mg [Citrus clementina])

HSP 1 Score: 107.8 bits (268), Expect = 8.8e-21
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = -1

Query: 1   GHVLPGTLFLLVGVWHVWSALLRYVSNPILFRVRVWNPMPGFDGKLKYLEL**VIVVGGF 60
           GHVLPGTLFLLVGVWH+WSA++R+VSNP  FRVRVWNP+PGFDGKLKY+EL  VIV+G F
Sbjct: 6   GHVLPGTLFLLVGVWHIWSAVVRHVSNPKSFRVRVWNPVPGFDGKLKYMEL-YVIVIGAF 65

Query: 61  L-ICV 120
           + +C+
Sbjct: 66  IDMCI 69

Query: 121 180
           
Sbjct: 126 69

Query: 181 193
           
Sbjct: 186 69

BLAST of WMU65470 vs. NCBI nr
Match: gi|802615248|ref|XP_012075087.1| (PREDICTED: transmembrane protein 45B-like [Jatropha curcas])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = -1

Query: 1   RGHVLPGTLFLLVGVWHVWSALLRYVSNPILFRVRVWNPMPGFDGKLKYLEL**VIVVGG 60
           +GH +PGTLFLL+GVWH+WS+L RYVSNP  FRVRVWNP+PGFDGKLKYLEL  ++V+G 
Sbjct: 5   KGHAVPGTLFLLIGVWHIWSSLFRYVSNPKAFRVRVWNPVPGFDGKLKYLEL-YLVVIGA 64

Query: 61  FL-ICV 120
           F+ +C+
Sbjct: 65  FIDLCI 69

Query: 121 180
           
Sbjct: 125 69

Query: 181 196
           
Sbjct: 185 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G32120.11.2e-2060.61 FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
gi|449456761|ref|XP_004146117.1|3.8e-2484.85PREDICTED: transmembrane protein 45B [Cucumis sativus][more]
gi|659095474|ref|XP_008448600.1|3.8e-2484.85PREDICTED: transmembrane protein 45B [Cucumis melo][more]
gi|641819952|gb|KDO40079.1|8.8e-2175.38hypothetical protein CISIN_1g023730mg [Citrus sinensis][more]
gi|567880063|ref|XP_006432590.1|8.8e-2175.38hypothetical protein CICLE_v10002116mg [Citrus clementina][more]
gi|802615248|ref|XP_012075087.1|1.1e-2069.70PREDICTED: transmembrane protein 45B-like [Jatropha curcas][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla008858Cla008858gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0128305S2_0128305EST