WMU64876 (transcribed_cluster) Watermelon (97103) v1

NameWMU64876
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 4004851 .. 4005198 (+)
Sequence length355
The following sequences are available for this feature:

transcribed_cluster sequence

CCAGCCGCGGCGGCGTGGCCGGAAATGGCGGCGATGGTGGGCATGGGGAGGGAGGAGGAGGTTCGGCGACGACGGGCTTGAAAATACTGGACCATATGCTTGAGGCGGTCAGCGGCGGCTGAAATAGAGCCGGCGGCTTGAGCCCAGGAGAGGATCGAAGCCGTTCGAGAAGAATTTTGCCCATGGTTAGTAGTGATGAGAACGGAGCCTGGGGAGGCTTGAGACTTGACTTTTGGAAAAGAGCTTCGAGGATGGAGGCGATGAAGGAGGGGCTGAGACGGTGGTCGTCGTGGCCGGTCAGAGTTAGGATGAAGAGATTGCGTCGGTTCTCGAGTGTGCACATTTTGGGACCTCT
BLAST of WMU64876 vs. TAIR10
Match: AT4G14440.1 (AT4G14440.1 3-hydroxyacyl-CoA dehydratase 1)

HSP 1 Score: 50.8 bits (120), Expect = 6.5e-07
Identity = 24/40 (60.00%), Postives = 26/40 (65.00%), Query Frame = -1

Query: 224 MCTLENRRNLFILTLTGHDDHRLSPSFIASILEALFQKSS 283
           MCTLE R +LF+LTLTG D+HR  P  IAS+L  L Q  S
Sbjct: 1   MCTLEKRGDLFLLTLTGEDEHRFHPDTIASVLSLLEQAKS 40

Query: 284 343
           
Sbjct: 61  40


HSP 2 Score: 33.1 bits (74), Expect = 1.4e-01
Identity = 28/83 (33.73%), Postives = 34/83 (40.96%), Query Frame = -3

Query: 33  HRLHPR------SSFPKVKSQASPGSVLITTNHGQNSSRTASILXXXXXXXXXXXXXDRL 92
           HR HP       S   + KSQ++ GSVLITT HG+  S    +               R+
Sbjct: 21  HRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGKFFSNGFDL---AWAQSAGHGAIKRM 80

Query: 93  KHMVQYFQARRRRTSSSLPMPTI 152
             MV+ F+         LPMPTI
Sbjct: 81  HQMVKSFKP-VLAALLDLPMPTI 99

Query: 153 212
           
Sbjct: 141 99

Query: 213 264
           
Sbjct: 201 99

BLAST of WMU64876 vs. TAIR10
Match: AT4G14430.1 (AT4G14430.1 indole-3-butyric acid response 10)

HSP 1 Score: 47.0 bits (110), Expect = 9.4e-06
Identity = 23/40 (57.50%), Postives = 25/40 (62.50%), Query Frame = -1

Query: 224 MCTLENRRNLFILTLTGHDDHRLSPSFIASILEALFQKSS 283
           MCTLE R +LF+LTLTG  +HR  P  IA+IL  L Q  S
Sbjct: 1   MCTLEKRGDLFLLTLTGDGEHRFHPDTIATILSLLEQAKS 40

Query: 284 343
           
Sbjct: 61  40

BLAST of WMU64876 vs. NCBI nr
Match: gi|449432586|ref|XP_004134080.1| (PREDICTED: 3-hydroxybutyryl-CoA dehydratase-like protein, mitochondrial [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = -1

Query: 185 MCTLENRRNLFILTLTGHDDHRLSPSFIASILEALFQKSSLKPPQAPFSSLLT 244
           MCTLE RRNLFILTLTGHDDHR SPS IA+ILEAL   S +K   +  S L+T
Sbjct: 1   MCTLEKRRNLFILTLTGHDDHRFSPSVIAAILEAL---SKVKSQASTGSVLIT 50

Query: 245 304
           
Sbjct: 61  50

Query: 305 344
           
Sbjct: 121 50

BLAST of WMU64876 vs. NCBI nr
Match: gi|659076208|ref|XP_008438558.1| (PREDICTED: enoyl-CoA hydratase domain-containing protein 2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = -1

Query: 185 MCTLENRRNLFILTLTGHDDHRLSPSFIASILEALFQKSSLKPPQAPFSSLLT 244
           MCTLE RRNLFILTLTG  DHRL+PS IA++LEAL   S +K   +P S L+T
Sbjct: 1   MCTLEKRRNLFILTLTGDHDHRLNPSVIAALLEAL---SKVKSQASPGSVLIT 50

Query: 245 304
           
Sbjct: 61  50

Query: 305 344
           
Sbjct: 121 50

BLAST of WMU64876 vs. NCBI nr
Match: gi|449432584|ref|XP_004134079.1| (PREDICTED: 3-hydroxybutyryl-CoA dehydratase-like protein, mitochondrial [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = -1

Query: 185 MCTLENRRNLFILTLTGHDDHRLSPSFIASILEALFQKSSLKPPQAPFSSLLT 244
           MCT+E R N FILTLTG DDHRLSPS I SIL+AL   S +K   +P S L+T
Sbjct: 1   MCTVEKRGNFFILTLTGDDDHRLSPSLINSILKAL---SQVKAQASPASVLIT 50

Query: 245 304
           
Sbjct: 61  50

Query: 305 344
           
Sbjct: 121 50

BLAST of WMU64876 vs. NCBI nr
Match: gi|659076193|ref|XP_008438552.1| (PREDICTED: enoyl-CoA hydratase domain-containing protein 2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = -1

Query: 185 MCTLENRRNLFILTLTGHDDHRLSPSFIASILEALFQKSSLKPPQAPFSSLLT 244
           MCT+E R N FILTLTG DDHRLSPS I SIL+AL   S +K   +P S L+T
Sbjct: 1   MCTVEKRGNFFILTLTGDDDHRLSPSLINSILKAL---SQVKAQASPASVLIT 50

Query: 245 304
           
Sbjct: 61  50

Query: 305 344
           
Sbjct: 121 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT4G14440.16.5e-0760.00 3-hydroxyacyl-CoA dehydratase 1[more]
AT4G14430.19.4e-0657.50 indole-3-butyric acid response 10[more]
Match NameE-valueIdentityDescription
gi|449432586|ref|XP_004134080.1|2.5e-0867.92PREDICTED: 3-hydroxybutyryl-CoA dehydratase-like protein, mitochondrial [Cucumis... [more]
gi|659076208|ref|XP_008438558.1|2.8e-0764.15PREDICTED: enoyl-CoA hydratase domain-containing protein 2, mitochondrial-like [... [more]
gi|449432584|ref|XP_004134079.1|1.8e-0662.26PREDICTED: 3-hydroxybutyryl-CoA dehydratase-like protein, mitochondrial [Cucumis... [more]
gi|659076193|ref|XP_008438552.1|1.8e-0662.26PREDICTED: enoyl-CoA hydratase domain-containing protein 2, mitochondrial-like [... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021543Cla021543gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0117268S2_0117268EST