WMU63224 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU63224
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr1 : 30052821 .. 30052929 (+)
Sequence length109
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ATTGATAGACGCTTTCAGAATCCTCTTGTCTTCAAGCTCAAATACATAAGTGTTATATCCAAGAGTGCATTTTGGTGTATGGGTAAAATAATATGCAACTCCCTTTAAG
Homology
[Close]
BLAST of WMU63224 vs. NCBI nr
Match: gi|659081066|ref|XP_008441132.1| (PREDICTED: F-box protein At2g17036 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 2.9e-08
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = -2 

Query: 7   LKGVAYYFTHTPKCTLGYNTYVFELEDKRILKAS 66
           LKG   YFTHTPKC LGYNT+VFELEDKRILKAS
Sbjct: 349 LKGSCIYFTHTPKCALGYNTHVFELEDKRILKAS 382

Query: 67   109
           
Sbjct: 409  382

[Close]
BLAST of WMU63224 vs. NCBI nr
Match: gi|778719846|ref|XP_004134837.2| (PREDICTED: putative F-box protein At1g65770 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-06
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = -2 

Query: 10  LKGVAYYFTHTPKCTLGYNTYVFELEDKRILKA 69
           LKG   YFTHTPKC LGYNT VFELE+KRIL A
Sbjct: 352 LKGSCIYFTHTPKCALGYNTLVFELEEKRILNA 384

Query: 70   109
           
Sbjct: 412  384

The following BLAST results are available for this feature:
BLAST of WMU63224 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081066|ref|XP_008441132.1|2.9e-0885.29PREDICTED: F-box protein At2g17036 [Cucumis melo][more]
gi|778719846|ref|XP_004134837.2|2.7e-0678.79PREDICTED: putative F-box protein At1g65770 [Cucumis sativus][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla014331Cla014331gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0087032S2_0087032EST