WMU62876 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU62876
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 10215644 .. 10215883 (-)
Sequence length	242

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CAATCCCAAGGTGCACAAACAGTAAAGAACTTTCCCAATGCTTCACTCACTTGCCATTAAGCCTCTCAATAACAGAGATTAAGCCTTGACTGCCCAATTTTCCATCTCCATTAGCCACCATTGCAGAGAAAAATTGCTTGGTCAATGCAGCCCCTGGCAAACACTACAATCCTCTCATCTTCCCCTTCTTCCACAACATCCACAGCCATTCCTAAAATCCTTCACCATATACTCAGCGAACC

Library


Library category	ESTs
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU62876 vs. TAIR10
Match: AT1G71180.1 (AT1G71180.1 6-phosphogluconate dehydrogenase family protein)

HSP 1 Score: 59.7 bits (143), Expect = 9.5e-10
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = -2


Query: 53  LPGAALTKQFFSAMVANGDGKLGSQGLISVIERLNG 112
           +PGAAL+KQ F+ MVANGDGKLG QG++SVI RLNG
Sbjct: 281 MPGAALSKQLFTGMVANGDGKLGIQGVVSVIRRLNG 316

Query: 113  161
           
Sbjct: 341  316

[Close]

BLAST of WMU62876 vs. TAIR10
Match: AT1G71170.1 (AT1G71170.1 6-phosphogluconate dehydrogenase family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = -2


Query: 53  LPGAALTKQFFSAMVANGDGKLGSQGLISVIERLNG 112
           +PG AL KQ F+ MVANGDGKLG QG++ VI RLNG
Sbjct: 262 MPGTALNKQLFTVMVANGDGKLGFQGVVDVIRRLNG 297

Query: 113  161
           
Sbjct: 322  297

[Close]

BLAST of WMU62876 vs. Swiss-Prot
Match: 3HID3_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial OS=Arabidopsis thaliana GN=At1g71180 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-08
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = -2


Query: 53  LPGAALTKQFFSAMVANGDGKLGSQGLISVIERLNG 112
           +PGAAL+KQ F+ MVANGDGKLG QG++SVI RLNG
Sbjct: 281 MPGAALSKQLFTGMVANGDGKLGIQGVVSVIRRLNG 316

Query: 113  161
           
Sbjct: 341  316

[Close]

BLAST of WMU62876 vs. Swiss-Prot
Match: 3HID2_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial OS=Arabidopsis thaliana GN=At1g71170 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = -2


Query: 53  LPGAALTKQFFSAMVANGDGKLGSQGLISVIERLNG 112
           +PG AL KQ F+ MVANGDGKLG QG++ VI RLNG
Sbjct: 262 MPGTALNKQLFTVMVANGDGKLGFQGVVDVIRRLNG 297

Query: 113  161
           
Sbjct: 322  297

[Close]

BLAST of WMU62876 vs. NCBI nr
Match: gi|778680236|ref|XP_004149969.2| (PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 9.0e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = -2


Query: 50  LPGAALTKQFFSAMVANGDGKLGSQGLISVIERLNGK 109
           LPGAALTKQ FSAMVANGDGK G+QGLISVIERLNGK
Sbjct: 270 LPGAALTKQLFSAMVANGDGKFGNQGLISVIERLNGK 306

Query: 110  161
           
Sbjct: 330  306

[Close]

BLAST of WMU62876 vs. NCBI nr
Match: gi|659112135|ref|XP_008456080.1| (PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = -2


Query: 50  LPGAALTKQFFSAMVANGDGKLGSQGLISVIERLNGK 109
           LPGAAL KQ FSAMVANGDGK GSQGLISVIERLNGK
Sbjct: 270 LPGAALIKQLFSAMVANGDGKFGSQGLISVIERLNGK 306

Query: 110  161
           
Sbjct: 330  306

[Close]

BLAST of WMU62876 vs. NCBI nr
Match: gi|698425322|ref|XP_009785096.1| (PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Nicotiana sylvestris])

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-09
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = -2


Query: 50  LPGAALTKQFFSAMVANGDGKLGSQGLISVIERLNGK 109
           LPGAAL+KQ FSAMVANGDGKLG+QGLI+VIER+NGK
Sbjct: 266 LPGAALSKQLFSAMVANGDGKLGTQGLITVIERINGK 302

Query: 110  161
           
Sbjct: 326  302

[Close]

BLAST of WMU62876 vs. NCBI nr
Match: gi|969996808|ref|XP_015064791.1| (PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Solanum pennellii])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = -2


Query: 50  LPGAALTKQFFSAMVANGDGKLGSQGLISVIERLNGK 109
           LPGAAL KQ FSAMVANGDGKLG+QGLI+VIER+NGK
Sbjct: 266 LPGAALNKQLFSAMVANGDGKLGTQGLITVIERINGK 302

Query: 110  161
           
Sbjct: 326  302

[Close]

BLAST of WMU62876 vs. NCBI nr
Match: gi|641834464|gb|KDO53457.1| (hypothetical protein CISIN_1g0362642mg, partial [Citrus sinensis])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = -2


Query: 50  LPGAALTKQFFSAMVANGDGKLGSQGLISVIERLNGK 109
           LPGAAL KQ FSAMVANGDGKLG+QGL+SVIER+NGK
Sbjct: 150 LPGAALGKQLFSAMVANGDGKLGTQGLVSVIERINGK 186

Query: 110  161
           
Sbjct: 210  186

The following BLAST results are available for this feature:

BLAST of WMU62876 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71180.1	9.5e-10	75.00	6-phosphogluconate dehydrogenase family protein	[more]
AT1G71170.1	1.1e-08	69.44	6-phosphogluconate dehydrogenase family protein	[more]

BLAST of WMU62876 vs. Swiss-Prot


Match Name	E-value	Identity	Description
3HID3_ARATH	1.7e-08	75.00	Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial OS=Arabidopsis...	[more]
3HID2_ARATH	1.9e-07	69.44	Probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial OS=Arabidopsis...	[more]

BLAST of WMU62876 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680236\|ref\|XP_004149969.2\|	9.0e-10	91.89	PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial [Cu...	[more]
gi\|659112135\|ref\|XP_008456080.1\|	2.0e-09	91.89	PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial [Cu...	[more]
gi\|698425322\|ref\|XP_009785096.1\|	3.4e-09	86.49	PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Ni...	[more]
gi\|969996808\|ref\|XP_015064791.1\|	4.5e-09	86.49	PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [So...	[more]
gi\|641834464\|gb\|KDO53457.1\|	4.5e-09	86.49	hypothetical protein CISIN_1g0362642mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR013328	6PGD_dom2

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla013038	Cla013038	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0080624	S2_0080624	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013328	6-phosphogluconate dehydrogenase, domain 2	GENE3D	G3DSA:1.10.1040.10		coord: 15..52 score: 2.
None	No IPR available	PANTHER	PTHR22981	3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED	coord: 1..52 score: 1.6
None	No IPR available	PANTHER	PTHR22981:SF54	3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 2, MITOCHONDRIAL-RELATED	coord: 1..52 score: 1.6