WMU62493 (transcribed_cluster) Watermelon (97103) v1

NameWMU62493
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr4 : 5710078 .. 5710351 (+)
Sequence length376
The following sequences are available for this feature:

transcribed_cluster sequence

CAATCAATAAGAATTGGCTGGGAAAGTTTGTTTGGGTCGTTGTAATTCTAAAAATTCCCGTATTCGTAGGTTGTATTCGGTAATTCGTTCTAATTGGACTTCCATCTCCACCGCCTCCGGACGCAATAAGTCCGGCCAAAACCCAGCCTCCGCCTTGATCCTCAGCTCCCTCCGCCGCAGATCTCCAAGAACCCCAAAATCTGTATTGAGAAAACAACGCTTCCCATTGCTTAGAATTTGGTGTTGGTGGAGTTGTCTGTACAGAATCTGAGAACTACTTGCACCCAAAACAGACATTTTCTCTCTGTTTTTACCTTCTTCCTTGTATGTGTTTTTAGGGTTTCTTTTGGGATTTTGTAATTGAGAGAGAAGAGAT
BLAST of WMU62493 vs. NCBI nr
Match: gi|659083001|ref|XP_008442136.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 59/78 (75.64%), Postives = 61/78 (78.21%), Query Frame = -2

Query: 82  MSVLGASSSQILYRQLHQHQILSNGKRC-FLNTDFGVLGDLRRRELRIKAEAGFWPDLLR 141
           M VLGASSS ILY QLHQHQ LSNGKRC FLNTDFG   D RRRELRIKAEAGFWPDL R
Sbjct: 1   MYVLGASSSHILYAQLHQHQFLSNGKRCGFLNTDFG---DHRRRELRIKAEAGFWPDLSR 60

Query: 142 PEAVEMEV-----QLERI 201
           P +VEME      QL+RI
Sbjct: 61  PASVEMESIDDSDQLDRI 75

Query: 202 261
           
Sbjct: 121 75

Query: 262 298
           
Sbjct: 181 75

BLAST of WMU62493 vs. NCBI nr
Match: gi|700199630|gb|KGN54788.1| (hypothetical protein Csa_4G496780 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 5.3e-17
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = -2

Query: 82  MSVLGASSSQILYRQLHQHQILSNGKRC-FLNTDFGVLGDLRRRELRIKAEAGFWPDLLR 141
           MSVLGAS+S ILY  LHQH  L+N KRC FL+TDFG   D RRRELRIKAEAGFWPDL R
Sbjct: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFG---DHRRRELRIKAEAGFWPDLSR 60

Query: 142 PEAVEMEV-----QLERI 201
           P +VEME      QL+RI
Sbjct: 61  PASVEMESIDDSDQLDRI 75

Query: 202 261
           
Sbjct: 121 75

Query: 262 298
           
Sbjct: 181 75

BLAST of WMU62493 vs. NCBI nr
Match: gi|778694930|ref|XP_004146393.2| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = -2

Query: 82  LSNGKRC-FLNTDFGVLGDLRRRELRIKAEAGFWPDLLRPEAVEMEV-----QLERI 141
           L+N KRC FL+TDFG   D RRRELRIKAEAGFWPDL RP +VEME      QL+RI
Sbjct: 42  LTNAKRCSFLSTDFG---DHRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRI 95

Query: 142 201
           
Sbjct: 102 95

Query: 202 235
           
Sbjct: 162 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659083001|ref|XP_008442136.1|1.1e-1975.64PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo][more]
gi|700199630|gb|KGN54788.1|5.3e-1769.23hypothetical protein Csa_4G496780 [Cucumis sativus][more]
gi|778694930|ref|XP_004146393.2|2.0e-0868.42PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla011663Cla011663gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0073674S2_0073674EST