WMU62080 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU62080
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr10 : 1316253 .. 1316417 (+)
Sequence length165
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CTGAGCATCACCTAGCCGTGAAGCTGCTGTTGCCATAAGCTGGAGGGACAGAGGCCAAACCAGGACAATCCCTAGCCCAATGCCCAGTTTTGATGGCATTTGAAGCATTCACCAGAGGCACCACCAGAAGGACCAGAAGCTCTATTTGAATACATCCCCCCACCA
Homology
[Close]
BLAST of WMU62080 vs. NCBI nr
Match: gi|659095462|ref|XP_008448593.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = -3 

Query: 11  KTGHWARDCPGLASVPPAYGNSSFTAR 70
           +TGHWARDCPGLA+VPPAYGN  FTAR
Sbjct: 835 QTGHWARDCPGLANVPPAYGNRGFTAR 861

Query: 71   92
           
Sbjct: 895  861

[Close]
BLAST of WMU62080 vs. NCBI nr
Match: gi|449456771|ref|XP_004146122.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = -3 

Query: 11  KTGHWARDCPGLASVPPAYGNSSFTAR 70
           +TGHWARDCPGLA+VPPAYGN  FTAR
Sbjct: 835 QTGHWARDCPGLANVPPAYGNRGFTAR 861

Query: 71   92
           
Sbjct: 895  861

The following BLAST results are available for this feature:
BLAST of WMU62080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095462|ref|XP_008448593.1|6.9e-0685.19PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis melo][more]
gi|449456771|ref|XP_004146122.1|6.9e-0685.19PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla008863Cla008863gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0065648S2_0065648EST


InterPro
Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 26..42
score: 2.