WMU60783 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU60783
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ubiquitin-like superfamily protein, putative isoform 1
Location	Chr5 : 1678886 .. 1680887 (+)
Sequence length	322

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Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTCATCAAGCATGGAGAGCCAACTTTGAGGATGAAAATACACACTCCAGCATCCAGGAATCAGATAAGAGAGAGTGACACCGAGGATGAAATGCTTAGAGCTGCTATTGAGGCTTCAAAACAGGATTCTGATCTTGAGCACTTACAAAGGCAACTTCAGCAGGAGGAGGAGGATCTTGCTCGTGCAGTTTCATTGTCGTTGAGAATGGCTGAGCAAGAGAAAGCAGTCCGTGTTTTTCAATACCATCTTCATCGACAAAGCAATCACTACAGCAACAAAAGGACACAGCAAGAAGTTTAGCTGCTCAAGAAGCTCCACACGT

Library


Library category	ESTs
watermelon fruit 18d library	1

Homology

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BLAST of WMU60783 vs. NCBI nr
Match: gi|659075338|ref|XP_008438091.1| (PREDICTED: uncharacterized protein LOC103483304 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 45/64 (70.31%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 40  HTPASRNQIRESDTEDEMLRAAIEASKQDSDXXXXXXXXXXXXXXXARAVSLSLRMAEQE 99
           HT +SRNQIRESD+EDEMLRAAIEASKQDSD               A AVSLSLRMAEQE
Sbjct: 151 HTSSSRNQIRESDSEDEMLRAAIEASKQDSDLQLLQRQLQQEEEDLAHAVSLSLRMAEQE 210

Query: 100 KAVR 159
           KAVR
Sbjct: 211 KAVR 214

Query: 160  219
           
Sbjct: 271  214

Query: 220  232
           
Sbjct: 331  214

[Close]

BLAST of WMU60783 vs. NCBI nr
Match: gi|449432187|ref|XP_004133881.1| (PREDICTED: uncharacterized protein LOC101206103 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-10
Identity = 43/63 (68.25%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 43  TPASRNQIRESDTEDEMLRAAIEASKQDSDXXXXXXXXXXXXXXXARAVSLSLRMAEQEK 102
           T +SRNQ RESDTEDEMLRAAIEASKQDSD               A AVSLSLRMAEQEK
Sbjct: 152 TSSSRNQTRESDTEDEMLRAAIEASKQDSDLQLLQRQLQQEEEDLAHAVSLSLRMAEQEK 211

Query: 103 AVR 162
           A R
Sbjct: 212 AGR 214

Query: 163  222
           
Sbjct: 272  214

Query: 223  232
           
Sbjct: 332  214

The following BLAST results are available for this feature:

BLAST of WMU60783 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075338\|ref\|XP_008438091.1\|	5.8e-12	70.31	PREDICTED: uncharacterized protein LOC103483304 [Cucumis melo]	[more]
gi\|449432187\|ref\|XP_004133881.1\|	4.1e-10	68.25	PREDICTED: uncharacterized protein LOC101206103 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003903	UIM_dom

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021264	Cla021264	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0042123	S2_0042123	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003903	Ubiquitin interacting motif	PFAM	PF02809	UIM	coord: 54..67 score: 0.011coord: 27..43 score: 6.
IPR003903	Ubiquitin interacting motif	SMART	SM00726	uim	coord: 27..46 score: 2.8coord: 54..73 score: 0
IPR003903	Ubiquitin interacting motif	PROFILE	PS50330	UIM	coord: 27..46 score: 9.16coord: 54..73 score: 9
None	No IPR available	unknown	Coil	Coil	coord: 38..65 scor