WMU60255 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU60255
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr2 : 15892854 .. 15893739 (+)
Sequence length323
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

TAGCTAAGGTTCCTCCCAACGCCTTGGAATGGTTTTAGTTCATGGCGGCGCTTCACCGGTTCTGGGTAGTCTTCCTCCCTTCGGACGAGGTTAACATGGACAGATGTCCTCCTATCTGCGGGTTCAAGCTCTACAGGGCACTCTGACCTACGAATACTCTCTAAAAATGGTGCATTTTCAGGATCATCCAACCTCCTTAAAGGACCATCATCAACGGAGAATCCATTCCTCCAAAAAGTGACAGTGTGAGTGACAGCCTCTGGGGTGCCCTAGGAATTGATGGCACTGTCTCCCCAGAGAGCAATCTTGCAGTTCCAGTAAAG
Homology
[Close]
BLAST of WMU60255 vs. TAIR10
Match: AT4G04210.1 (AT4G04210.1 plant UBX domain containing protein 4)

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-29
Identity = 60/86 (69.77%), Postives = 65/86 (75.58%), Query Frame = -1 

Query: 6   PEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLV 65
           PE V H + FW NGF++DDGPLR+LDDPENA FLESIR+SECP ELEPADRR  VHVNL+
Sbjct: 107 PEPVVHNIVFWSNGFTIDDGPLRKLDDPENASFLESIRKSECPKELEPADRRAPVHVNLM 166

Query: 66  RREEDYPEPVKRRHELKPFQGVGRNL 125
           R+EE  PE  KRR     FQGVGR L
Sbjct: 167 RKEEKCPERQKRR---VSFQGVGRTL 189

Query: 126  185
           
Sbjct: 227  189

Query: 186  245
           
Sbjct: 287  189

Query: 246  264
           
Sbjct: 347  189


HSP 2 Score: 29.6 bits (65), Expect = 1.4e+00
Identity = 13/21 (61.90%), Postives = 14/21 (66.67%), Query Frame = -2 

Query: 260 FTGTARLLSGETVPSIPRAPQ 319
           FTGT RLLSGE VP+  + P+
Sbjct: 88  FTGTGRLLSGENVPTGNQQPE 108

Query: 320  323
           
Sbjct: 148  108

[Close]
BLAST of WMU60255 vs. TAIR10
Match: AT4G22150.1 (AT4G22150.1 plant UBX domain-containing protein 3)

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-27
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = -1 

Query: 6   LWGDSAINS*GTPEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEP 65
           L G+S   +   PE V H + FW NGF+VDDGPLR+LDDPENA FL+SIR+SECP ELEP
Sbjct: 164 LSGESVPTALQQPEPVIHNIIFWSNGFTVDDGPLRKLDDPENASFLDSIRKSECPKELEP 223

Query: 66  ADRRTSVHVNLVRREEDYPEPVKRRHELKPFQGVGRNL 125
            D+R  VHVNL+RR+E  PE  K +     FQGVGR L
Sbjct: 224 VDKRAPVHVNLMRRDEKCPEKEKLK---VSFQGVGRTL 258

Query: 126  185
           
Sbjct: 284  258

Query: 186  245
           
Sbjct: 344  258

Query: 246  300
           
Sbjct: 404  258


HSP 2 Score: 30.8 bits (68), Expect = 6.3e-01
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = -2 

Query: 260 FTGTARLLSGETVPSIPRAPQ 319
           FTGT RLLSGE+VP+  + P+
Sbjct: 157 FTGTGRLLSGESVPTALQQPE 177

Query: 320  323
           
Sbjct: 217  177

[Close]
BLAST of WMU60255 vs. TAIR10
Match: AT4G15410.1 (AT4G15410.1 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma)

HSP 1 Score: 114.4 bits (285), Expect = 4.4e-26
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -1 

Query: 6   PEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLV 65
           P+ + HT+TFW NGF+V+DGPLR   DPENA F+ SI RSECP ELEPAD++  VHV+LV
Sbjct: 229 PQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLV 288

Query: 66  RREEDYPEPVKRRHELKPFQGVGRNL 125
           RR E++ EP K ++   PFQGVGR L
Sbjct: 289 RRGENFTEPPKPKN---PFQGVGRTL 311

Query: 126  185
           
Sbjct: 349  311

Query: 186  245
           
Sbjct: 409  311

Query: 246  264
           
Sbjct: 469  311


HSP 2 Score: 31.2 bits (69), Expect = 4.9e-01
Identity = 17/35 (48.57%), Postives = 21/35 (60.00%), Query Frame = -2 

Query: 233 FTGTARLLSGETVPSIPR-----APQRLSLTLSLF 292
           FTG ARLLSGE V S P+      PQR+  T++ +
Sbjct: 205 FTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFW 239

Query: 293  323
           
Sbjct: 265  239

[Close]
BLAST of WMU60255 vs. TAIR10
Match: AT3G21660.1 (AT3G21660.1 UBX domain-containing protein)

HSP 1 Score: 63.9 bits (154), Expect = 6.8e-11
Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = -1 

Query: 69  THTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLVRREE 128
           THTVT W NGF+VDD  L+ LDDPENA FLE I   E P EL     +  V V ++ REE
Sbjct: 152 THTVTSWSNGFTVDDSSLKTLDDPENATFLEIISSMESPREL----GQVRVQVKIISREE 208

Query: 129 D 188
           +
Sbjct: 212 E 208

Query: 189  248
           
Sbjct: 272  208

Query: 249  252
           
Sbjct: 332  208


HSP 2 Score: 58.5 bits (140), Expect = 2.8e-09
Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = -1 

Query: 159 EAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLE 218
           E VT+TVT WRNGF+VDD P + LDDPENA FLE
Sbjct: 267 EVVTYTVTIWRNGFTVDDDPFKSLDDPENAAFLE 300

Query: 219  261
           
Sbjct: 327  300

[Close]
BLAST of WMU60255 vs. Swiss-Prot
Match: PUX4_ARATH (Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana GN=PUX4 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-28
Identity = 60/86 (69.77%), Postives = 65/86 (75.58%), Query Frame = -1 

Query: 6   PEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLV 65
           PE V H + FW NGF++DDGPLR+LDDPENA FLESIR+SECP ELEPADRR  VHVNL+
Sbjct: 107 PEPVVHNIVFWSNGFTIDDGPLRKLDDPENASFLESIRKSECPKELEPADRRAPVHVNLM 166

Query: 66  RREEDYPEPVKRRHELKPFQGVGRNL 125
           R+EE  PE  KRR     FQGVGR L
Sbjct: 167 RKEEKCPERQKRR---VSFQGVGRTL 189

Query: 126  185
           
Sbjct: 227  189

Query: 186  245
           
Sbjct: 287  189

Query: 246  264
           
Sbjct: 347  189


HSP 2 Score: 29.6 bits (65), Expect = 2.5e+01
Identity = 13/21 (61.90%), Postives = 14/21 (66.67%), Query Frame = -2 

Query: 260 FTGTARLLSGETVPSIPRAPQ 319
           FTGT RLLSGE VP+  + P+
Sbjct: 88  FTGTGRLLSGENVPTGNQQPE 108

Query: 320  323
           
Sbjct: 148  108

[Close]
BLAST of WMU60255 vs. Swiss-Prot
Match: PUX3_ARATH (Plant UBX domain-containing protein 3 OS=Arabidopsis thaliana GN=PUX3 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-26
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = -1 

Query: 6   LWGDSAINS*GTPEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEP 65
           L G+S   +   PE V H + FW NGF+VDDGPLR+LDDPENA FL+SIR+SECP ELEP
Sbjct: 99  LSGESVPTALQQPEPVIHNIIFWSNGFTVDDGPLRKLDDPENASFLDSIRKSECPKELEP 158

Query: 66  ADRRTSVHVNLVRREEDYPEPVKRRHELKPFQGVGRNL 125
            D+R  VHVNL+RR+E  PE  K +     FQGVGR L
Sbjct: 159 VDKRAPVHVNLMRRDEKCPEKEKLK---VSFQGVGRTL 193

Query: 126  185
           
Sbjct: 219  193

Query: 186  245
           
Sbjct: 279  193

Query: 246  300
           
Sbjct: 339  193


HSP 2 Score: 30.8 bits (68), Expect = 1.1e+01
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = -2 

Query: 260 FTGTARLLSGETVPSIPRAPQ 319
           FTGT RLLSGE+VP+  + P+
Sbjct: 92  FTGTGRLLSGESVPTALQQPE 112

Query: 320  323
           
Sbjct: 152  112

[Close]
BLAST of WMU60255 vs. Swiss-Prot
Match: PUX5_ARATH (Plant UBX domain-containing protein 5 OS=Arabidopsis thaliana GN=PUX5 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.7e-25
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -1 

Query: 6   PEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLV 65
           P+ + HT+TFW NGF+V+DGPLR   DPENA F+ SI RSECP ELEPAD++  VHV+LV
Sbjct: 229 PQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLV 288

Query: 66  RREEDYPEPVKRRHELKPFQGVGRNL 125
           RR E++ EP K ++   PFQGVGR L
Sbjct: 289 RRGENFTEPPKPKN---PFQGVGRTL 311

Query: 126  185
           
Sbjct: 349  311

Query: 186  245
           
Sbjct: 409  311

Query: 246  264
           
Sbjct: 469  311


HSP 2 Score: 31.2 bits (69), Expect = 8.6e+00
Identity = 17/35 (48.57%), Postives = 21/35 (60.00%), Query Frame = -2 

Query: 233 FTGTARLLSGETVPSIPR-----APQRLSLTLSLF 292
           FTG ARLLSGE V S P+      PQR+  T++ +
Sbjct: 205 FTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFW 239

Query: 293  323
           
Sbjct: 265  239

[Close]
BLAST of WMU60255 vs. Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ubx1 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-11
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = -1 

Query: 6   PEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLV 65
           P  V  T+ FW +GFSVDDG L R DDP+NA  L SIR+   P+ +  A     V V + 
Sbjct: 178 PRRVRRTLHFWADGFSVDDGELYRSDDPQNAEILNSIRQGRAPLSIMNAQHGQDVDVEIK 237

Query: 66  RREEDYPEPVKRRHELKPFQGVGRNL 125
           + +E Y  P   + + +PF G G+ L
Sbjct: 238 QHDEKYVRP---KPKYQPFAGKGQRL 260

Query: 126  185
           
Sbjct: 298  260

Query: 186  245
           
Sbjct: 358  260

Query: 246  264
           
Sbjct: 418  260

[Close]
BLAST of WMU60255 vs. Swiss-Prot
Match: UBX2B_CHICK (UBX domain-containing protein 2B OS=Gallus gallus GN=UBXN2B PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-10
Identity = 37/88 (42.05%), Postives = 48/88 (54.55%), Query Frame = -1 

Query: 6   GTPEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVN 65
           G  + V   +  WRNGFS+DDG LR   DP NA FLES++R E PV+L+       V+++
Sbjct: 171 GENQDVQILLKLWRNGFSLDDGELRSYSDPINAQFLESVKRGEIPVDLQRLVHGGQVNLD 230

Query: 66  LVRREEDYPEPVKRRHELKPFQGVGRNL 125
           +   +E   E VK R   K F G G+ L
Sbjct: 231 MEDHQEQ--EYVKPRLRFKAFSGEGQKL 256

Query: 126  185
           
Sbjct: 291  256

Query: 186  245
           
Sbjct: 351  256

Query: 246  270
           
Sbjct: 411  256

[Close]
BLAST of WMU60255 vs. NCBI nr
Match: gi|659111833|ref|XP_008455930.1| (PREDICTED: UBA and UBX domain-containing protein At4g15410 [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 3.2e-39
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = -1 

Query: 3   PEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLV 62
           PEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPF+ESIRRSECPVELEPADRRTSVHVNLV
Sbjct: 215 PEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFIESIRRSECPVELEPADRRTSVHVNLV 274

Query: 63  RREEDYPEPVKRRHELKPFQGVGRNLS 122
           RREEDYPEPVK RH   PFQGVGR L+
Sbjct: 275 RREEDYPEPVKHRH--APFQGVGRTLA 299

Query: 123  182
           
Sbjct: 335  299

Query: 183  242
           
Sbjct: 395  299

Query: 243  264
           
Sbjct: 455  299

[Close]
BLAST of WMU60255 vs. NCBI nr
Match: gi|356554464|ref|XP_003545566.1| (PREDICTED: plant UBX domain-containing protein 4-like [Glycine max])

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = -1 

Query: 6   EAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLVR 65
           E VTHTVTFWRNGFSV+DGPLRRLDDP+NAPFLESI++SECP ELEPADRRT+VHVNL R
Sbjct: 226 EEVTHTVTFWRNGFSVNDGPLRRLDDPQNAPFLESIKKSECPKELEPADRRTAVHVNLTR 285

Query: 66  REEDYPEPVKRRHELKPFQGVGRNL 125
           R+EDYPEPVK RH  + FQGVGR L
Sbjct: 286 RDEDYPEPVKPRH--RAFQGVGRTL 308

Query: 126  185
           
Sbjct: 346  308

Query: 186  245
           
Sbjct: 406  308

Query: 246  261
           
Sbjct: 466  308

[Close]
BLAST of WMU60255 vs. NCBI nr
Match: gi|255645681|gb|ACU23334.1| (unknown [Glycine max])

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = -1 

Query: 6   EAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLVR 65
           E VTHTVTFWRNGFSV+DGPLRRLDDP+NAPFLESI++SECP ELEPADRRT+VHVNL R
Sbjct: 226 EEVTHTVTFWRNGFSVNDGPLRRLDDPQNAPFLESIKKSECPKELEPADRRTAVHVNLTR 285

Query: 66  REEDYPEPVKRRHELKPFQGVGRNL 125
           R+EDYPEPVK RH  + FQGVGR L
Sbjct: 286 RDEDYPEPVKPRH--RAFQGVGRTL 308

Query: 126  185
           
Sbjct: 346  308

Query: 186  245
           
Sbjct: 406  308

Query: 246  261
           
Sbjct: 466  308

[Close]
BLAST of WMU60255 vs. NCBI nr
Match: gi|595933846|ref|XP_007215435.1| (hypothetical protein PRUPE_ppa006186mg [Prunus persica])

HSP 1 Score: 149.4 bits (376), Expect = 3.5e-33
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = -1 

Query: 6   PEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLV 65
           PEAV HT+TFWRNGFSVDDGPLRRLDDPENAPFLESI++SECP ELEPA+RRT+VHVNL+
Sbjct: 228 PEAVIHTITFWRNGFSVDDGPLRRLDDPENAPFLESIKKSECPKELEPANRRTAVHVNLM 287

Query: 66  RREEDYPEPVKRRHELKPFQGVGRNL 125
           RREE+YPEPVKR      FQGVGR L
Sbjct: 288 RREEEYPEPVKRH---VAFQGVGRTL 310

Query: 126  185
           
Sbjct: 348  310

Query: 186  245
           
Sbjct: 408  310

Query: 246  264
           
Sbjct: 468  310

[Close]
BLAST of WMU60255 vs. NCBI nr
Match: gi|645247796|ref|XP_008230003.1| (PREDICTED: UBA and UBX domain-containing protein At4g15410 [Prunus mume])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = -1 

Query: 6   PEAVTHTVTFWRNGFSVDDGPLRRLDDPENAPFLESIRRSECPVELEPADRRTSVHVNLV 65
           PE V HT+TFWRNGFSVDDGPLRRLDDPENAPFLESI++SECP ELEPA+RRT+VHVNL+
Sbjct: 255 PEVVIHTITFWRNGFSVDDGPLRRLDDPENAPFLESIKKSECPKELEPANRRTAVHVNLM 314

Query: 66  RREEDYPEPVKRRHELKPFQGVGRNL 125
           RREE+YPEPVKR      FQGVGR L
Sbjct: 315 RREEEYPEPVKRH---VAFQGVGRTL 337

Query: 126  185
           
Sbjct: 375  337

Query: 186  245
           
Sbjct: 435  337

Query: 246  264
           
Sbjct: 495  337

The following BLAST results are available for this feature:
BLAST of WMU60255 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G04210.12.5e-2969.77 plant UBX domain containing protein 4[more]
AT4G22150.11.8e-2760.20 plant UBX domain-containing protein 3[more]
AT4G15410.14.4e-2661.63 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B ... [more]
AT3G21660.16.8e-1154.10 UBX domain-containing protein[more]
BLAST of WMU60255 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PUX4_ARATH4.4e-2869.77Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana GN=PUX4 PE=1 SV=1[more]
PUX3_ARATH3.1e-2660.20Plant UBX domain-containing protein 3 OS=Arabidopsis thaliana GN=PUX3 PE=1 SV=1[more]
PUX5_ARATH7.7e-2561.63Plant UBX domain-containing protein 5 OS=Arabidopsis thaliana GN=PUX5 PE=1 SV=1[more]
UBX1_EMENI3.7e-1140.70UBX domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38... [more]
UBX2B_CHICK1.9e-1042.05UBX domain-containing protein 2B OS=Gallus gallus GN=UBXN2B PE=2 SV=1[more]
BLAST of WMU60255 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111833|ref|XP_008455930.1|3.2e-3991.95PREDICTED: UBA and UBX domain-containing protein At4g15410 [Cucumis melo][more]
gi|356554464|ref|XP_003545566.1|1.6e-3382.35PREDICTED: plant UBX domain-containing protein 4-like [Glycine max][more]
gi|255645681|gb|ACU23334.1|1.6e-3382.35unknown [Glycine max][more]
gi|595933846|ref|XP_007215435.1|3.5e-3381.40hypothetical protein PRUPE_ppa006186mg [Prunus persica][more]
gi|645247796|ref|XP_008230003.1|1.0e-3280.23PREDICTED: UBA and UBX domain-containing protein At4g15410 [Prunus mume][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla001595Cla001595gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0033054S2_0033054EST