WMU60224 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU60224
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr1 : 27136427 .. 27136640 (+)
Sequence length214
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GGTTGAGTACTGATAAGCCCAAAGGCAATAGCAAGCTTCTCACTGTGAACTTCGAGCGATTGCTTCTTCTGTTCCTCCCCGAGATCATGTAAAACAACACCGATCTGTGGTGTGTATCTGCGAACTTTTGAGCCAGCTATTTATCTCATTCAACATCACATAGATTTCTTTGCTTTTGGGATGTTTCCTCTCACCAGCAAGGAACTCATGCACC
Homology
[Close]
BLAST of WMU60224 vs. TAIR10
Match: AT4G37380.1 (AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.7e-07
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = -3 

Query: 3   KVRRYTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLISTQ 62
           K   Y P    VL DL E +K+QSL+VHSE+LAIA+GLIST+
Sbjct: 537 KSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTK 578

Query: 63   122
           
Sbjct: 597  578

Query: 123  129
           
Sbjct: 657  578


HSP 2 Score: 42.7 bits (99), Expect = 1.1e-04
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = -2 

Query: 124 VHEFLAGERKHPKSKEIYVMLNEINSWLKS 183
           VHEF AG+R+H KSKEIY ML +I+  +KS
Sbjct: 509 VHEFRAGDREHSKSKEIYTMLRKISERIKS 538

Query: 184  214
           
Sbjct: 569  538

[Close]
BLAST of WMU60224 vs. TAIR10
Match: AT2G22070.1 (AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 50.8 bits (120), Expect = 3.9e-07
Identity = 26/37 (70.27%), Postives = 25/37 (67.57%), Query Frame = -3 

Query: 6   YTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLIST 65
           Y P    VLHDL EE K+Q L  HSEKLAIAFGLIST
Sbjct: 695 YVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731

Query: 66   117
           
Sbjct: 755  731

[Close]
BLAST of WMU60224 vs. TAIR10
Match: AT1G34160.1 (AT1G34160.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-06
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = -3 

Query: 12  YTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLI 71
           Y  Q G+VLHD+GEE+K+ +L  HSEKLA+A+GL+
Sbjct: 487 YVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLM 521

Query: 72   117
           
Sbjct: 547  521

[Close]
BLAST of WMU60224 vs. TAIR10
Match: AT4G37170.1 (AT4G37170.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.5e-06
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = -3 

Query: 3   KVRRYTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLISTQ 62
           K   Y P   +VLHD+ +EQK+++L  HSEKLA+AF ++ST+
Sbjct: 596 KEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTE 637

Query: 63   122
           
Sbjct: 656  637

Query: 123  129
           
Sbjct: 716  637

[Close]
BLAST of WMU60224 vs. TAIR10
Match: AT4G30700.1 (AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.3e-06
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = -3 

Query: 3   YTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLISTQ 62
           Y P+  + LHD+ EE+++  ++VHSE+LAIAFGLI+T+
Sbjct: 701 YQPETELALHDVEEEERELMVKVHSERLAIAFGLIATE 738

Query: 63   117
           
Sbjct: 761  738

[Close]
BLAST of WMU60224 vs. Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana GN=ELI1 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-06
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = -3 

Query: 3   KVRRYTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLISTQ 62
           K   Y P    VL DL E +K+QSL+VHSE+LAIA+GLIST+
Sbjct: 537 KSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTK 578

Query: 63   122
           
Sbjct: 597  578

Query: 123  129
           
Sbjct: 657  578


HSP 2 Score: 42.7 bits (99), Expect = 1.9e-03
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = -2 

Query: 124 VHEFLAGERKHPKSKEIYVMLNEINSWLKS 183
           VHEF AG+R+H KSKEIY ML +I+  +KS
Sbjct: 509 VHEFRAGDREHSKSKEIYTMLRKISERIKS 538

Query: 184  214
           
Sbjct: 569  538

[Close]
BLAST of WMU60224 vs. Swiss-Prot
Match: OGR1_ORYSJ (Pentatricopeptide repeat-containing protein OGR1, mitochondrial OS=Oryza sativa subsp. japonica GN=OGR1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.0e-06
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = -3 

Query: 6   YTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLIST 65
           Y P+   VLHD+GEE+K+ +L  HSEKLAIAFGLI+T
Sbjct: 496 YEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIAT 532

Query: 66   117
           
Sbjct: 556  532


HSP 2 Score: 29.6 bits (65), Expect = 1.7e+01
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = -2 

Query: 136 VHEFLAGERKHPKSKEIYVMLNEINS 195
           +H+F+ G+++HP+ +EIY  L +I S
Sbjct: 464 MHKFINGDKEHPRWQEIYRALEDIVS 489

Query: 196  214
           
Sbjct: 524  489

[Close]
BLAST of WMU60224 vs. Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.9e-06
Identity = 26/37 (70.27%), Postives = 25/37 (67.57%), Query Frame = -3 

Query: 6   YTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLIST 65
           Y P    VLHDL EE K+Q L  HSEKLAIAFGLIST
Sbjct: 695 YVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731

Query: 66   117
           
Sbjct: 755  731

[Close]
BLAST of WMU60224 vs. NCBI nr
Match: gi|951008042|ref|XP_014508901.1| (PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 71.2 bits (173), Expect = 7.9e-10
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = -3 

Query: 6   KVRRYTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLIST 65
           K R YTP+I VVLHD+GE+QK+QSLEVHSEKLA+AFGLIST
Sbjct: 531 KARGYTPKIDVVLHDIGEQQKEQSLEVHSEKLALAFGLIST 571

Query: 66   125
           
Sbjct: 591  571

Query: 126  129
           
Sbjct: 651  571

[Close]
BLAST of WMU60224 vs. NCBI nr
Match: gi|645220066|ref|XP_008238575.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic [Prunus mume])

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = -3 

Query: 3   KVRRYTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLISTQ 62
           K   YTPQI  VLHDLGE +K+QSLEVHSEKLAIAFGLISTQ
Sbjct: 525 KAHGYTPQIDTVLHDLGEREKEQSLEVHSEKLAIAFGLISTQ 566

Query: 63   122
           
Sbjct: 585  566

Query: 123  129
           
Sbjct: 645  566

[Close]
BLAST of WMU60224 vs. NCBI nr
Match: gi|449448280|ref|XP_004141894.1| (PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = -3 

Query: 3   KVRRYTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLISTQ 62
           K R YTPQ  VVLHDL EEQK+QSLEVHSEKLAIAFGLIST+
Sbjct: 550 KARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTK 591

Query: 63   122
           
Sbjct: 610  591

Query: 123  129
           
Sbjct: 670  591

[Close]
BLAST of WMU60224 vs. NCBI nr
Match: gi|593785663|ref|XP_007155872.1| (hypothetical protein PHAVU_003G238900g [Phaseolus vulgaris])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = -3 

Query: 6   KVRRYTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLIST 65
           K R YTP+I VVLHD+GE+QK+QSLEVHSEKLA+AFGL+ST
Sbjct: 530 KARGYTPKIDVVLHDIGEQQKEQSLEVHSEKLALAFGLLST 570

Query: 66   125
           
Sbjct: 590  570

Query: 126  129
           
Sbjct: 650  570

[Close]
BLAST of WMU60224 vs. NCBI nr
Match: gi|595823118|ref|XP_007205016.1| (hypothetical protein PRUPE_ppa003703mg [Prunus persica])

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-09
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = -3 

Query: 3   YTPQIGVVLHDLGEEQKKQSLEVHSEKLAIAFGLISTQ 62
           YTPQI  VLHDLGE +K+QSLEVHSEKLAIAFGLISTQ
Sbjct: 464 YTPQIDTVLHDLGEREKEQSLEVHSEKLAIAFGLISTQ 501

Query: 63   117
           
Sbjct: 524  501

The following BLAST results are available for this feature:
BLAST of WMU60224 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37380.11.7e-0759.52 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G22070.13.9e-0770.27 pentatricopeptide (PPR) repeat-containing protein[more]
AT1G34160.11.1e-0660.00 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G37170.11.5e-0650.00 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G30700.14.3e-0652.63 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of WMU60224 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP354_ARATH3.1e-0659.52Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
OGR1_ORYSJ4.0e-0664.86Pentatricopeptide repeat-containing protein OGR1, mitochondrial OS=Oryza sativa ... [more]
PP168_ARATH6.9e-0670.27Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN... [more]
BLAST of WMU60224 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|951008042|ref|XP_014508901.1|7.9e-1080.49PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Vign... [more]
gi|645220066|ref|XP_008238575.1|1.0e-0980.95PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic ... [more]
gi|449448280|ref|XP_004141894.1|1.0e-0983.33PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Cucu... [more]
gi|593785663|ref|XP_007155872.1|1.3e-0978.05hypothetical protein PHAVU_003G238900g [Phaseolus vulgaris][more]
gi|595823118|ref|XP_007205016.1|2.3e-0986.84hypothetical protein PRUPE_ppa003703mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla013988Cla013988gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0032521S2_0032521EST


InterPro
Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
No results