WMU60224 (transcribed_cluster) Watermelon (97103) v1
The following sequences are available for this feature:
GGTTGAGTACTGATAAGCCCAAAGGCAATAGCAAGCTTCTCACTGTGAACTTCGAGCGATTGCTTCTTCTGTTCCTCCCCGAGATCATGTAAAACAACACCGATCTGTGGTGTGTATCTGCGAACTTTTGAGCCAGCTATTTATCTCATTCAACATCACATAGATTTCTTTGCTTTTGGGATGTTTCCTCTCACCAGCAAGGAACTCATGCACC
BLAST of WMU60224 vs. TAIR10
Match: AT4G37380.1 (AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 52.0 bits (123), Expect = 1.7e-07 Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = -3
HSP 2 Score: 42.7 bits (99), Expect = 1.1e-04 Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = -2
BLAST of WMU60224 vs. TAIR10
Match: AT2G22070.1 (AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein) HSP 1 Score: 50.8 bits (120), Expect = 3.9e-07 Identity = 26/37 (70.27%), Postives = 25/37 (67.57%), Query Frame = -3
BLAST of WMU60224 vs. TAIR10
Match: AT1G34160.1 (AT1G34160.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 49.3 bits (116), Expect = 1.1e-06 Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = -3
BLAST of WMU60224 vs. TAIR10
Match: AT4G37170.1 (AT4G37170.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 48.9 bits (115), Expect = 1.5e-06 Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = -3
BLAST of WMU60224 vs. TAIR10
Match: AT4G30700.1 (AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 47.4 bits (111), Expect = 4.3e-06 Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = -3
BLAST of WMU60224 vs. Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana GN=ELI1 PE=3 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 3.1e-06 Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = -3
HSP 2 Score: 42.7 bits (99), Expect = 1.9e-03 Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = -2
BLAST of WMU60224 vs. Swiss-Prot
Match: OGR1_ORYSJ (Pentatricopeptide repeat-containing protein OGR1, mitochondrial OS=Oryza sativa subsp. japonica GN=OGR1 PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 4.0e-06 Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = -3
HSP 2 Score: 29.6 bits (65), Expect = 1.7e+01 Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = -2
BLAST of WMU60224 vs. Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 6.9e-06 Identity = 26/37 (70.27%), Postives = 25/37 (67.57%), Query Frame = -3
BLAST of WMU60224 vs. NCBI nr
Match: gi|951008042|ref|XP_014508901.1| (PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Vigna radiata var. radiata]) HSP 1 Score: 71.2 bits (173), Expect = 7.9e-10 Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = -3
BLAST of WMU60224 vs. NCBI nr
Match: gi|645220066|ref|XP_008238575.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic [Prunus mume]) HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09 Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = -3
BLAST of WMU60224 vs. NCBI nr
Match: gi|449448280|ref|XP_004141894.1| (PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Cucumis sativus]) HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09 Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = -3
BLAST of WMU60224 vs. NCBI nr
Match: gi|593785663|ref|XP_007155872.1| (hypothetical protein PHAVU_003G238900g [Phaseolus vulgaris]) HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09 Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = -3
BLAST of WMU60224 vs. NCBI nr
Match: gi|595823118|ref|XP_007205016.1| (hypothetical protein PRUPE_ppa003703mg [Prunus persica]) HSP 1 Score: 69.7 bits (169), Expect = 2.3e-09 Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = -3
The following BLAST results are available for this feature:
The following terms have been associated with this transcribed_cluster:
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
This transcribed_cluster is associated with the following gene feature(s):
The following EST feature(s) are a part of this transcribed_cluster:
Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
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