WMU58369 (transcribed_cluster) Watermelon (97103) v1

NameWMU58369
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRibosomal L28 family, putative
LocationChr10 : 1353524 .. 1353859 (+)
Sequence length354
The following sequences are available for this feature:

transcribed_cluster sequence

GACAACTGAAATTGGGGCTGTTTTAAGGAAAAGGAACAAAAAGAATTAGAAGAAAGAATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAATTATTTATAGGAGACCTTTTGTTTTTCTTTTTT
BLAST of WMU58369 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-10
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1

Query: 52  ERMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARR--QMYGSSTKHDQ 111
           E  Y ELGQ EV FF+PEDEAK EQGF++L ++++ AR+EARR  +  G   K D+
Sbjct: 132 EARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTFRKKGGGNKGDE 187

Query: 112 171
           
Sbjct: 192 187

Query: 172 214
           
Sbjct: 252 187

BLAST of WMU58369 vs. NCBI nr
Match: gi|823122027|ref|XP_012469124.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 1

Query: 52  ERMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSSTKHDQIEESQE 111
           E+MYEELGQ EVVFFSPEDEAKFEQGF+ELKL+ERAAR++ARRQMYG S K ++IE  + 
Sbjct: 132 EKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWSGKLEEIENRRS 191

Query: 112 N 171
           +
Sbjct: 192 H 192

Query: 172 231
           
Sbjct: 252 192

Query: 232 235
           
Sbjct: 312 192

BLAST of WMU58369 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1

Query: 52  ERMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSSTKHDQIEESQE 111
           E +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EARRQMYGSS K +QI+E  E
Sbjct: 132 ETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSSAKLNQIKEGGE 191

Query: 112 171
           
Sbjct: 192 191

Query: 172 231
           
Sbjct: 252 191

BLAST of WMU58369 vs. NCBI nr
Match: gi|728825208|gb|KHG06146.1| (54S ribosomal L24, mitochondrial [Gossypium arboreum])

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1

Query: 52  ERMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSSTKHDQIEESQE 111
           E+MYEELGQ EVVFFSPEDEAKFEQGF++LKL+ERAAR++ARRQMYG S K ++IE  + 
Sbjct: 132 EKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLAERAARRDARRQMYGWSGKLEEIENRRS 191

Query: 112 N 171
           +
Sbjct: 192 H 192

Query: 172 231
           
Sbjct: 252 192

Query: 232 235
           
Sbjct: 312 192

BLAST of WMU58369 vs. NCBI nr
Match: gi|590571460|ref|XP_007011601.1| (Ribosomal L28 family, putative [Theobroma cacao])

HSP 1 Score: 85.5 bits (210), Expect = 6.8e-14
Identity = 42/59 (71.19%), Postives = 54/59 (91.53%), Query Frame = 1

Query: 52  ERMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSSTKHDQIEESQ 111
           E+MYEELGQ EVVFFSPE+EAKFEQGF++LKL+ERAAR++ARRQMYG + K ++IE+ +
Sbjct: 184 EKMYEELGQMEVVFFSPEEEAKFEQGFKDLKLAERAARRDARRQMYGWTGKQEKIEDGK 242

Query: 112 171
           
Sbjct: 244 242

Query: 172 229
           
Sbjct: 304 242

BLAST of WMU58369 vs. NCBI nr
Match: gi|147865450|emb|CAN79404.1| (hypothetical protein VITISV_028074 [Vitis vinifera])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 52  ERMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSSTKHDQIEE 111
           E+MYEELG+ +VVFFSPEDE KFEQGF+ELKL+ERAAR+EARR +YG S K  Q+EE
Sbjct: 128 EKMYEELGEMDVVFFSPEDEVKFEQGFKELKLAERAARREARRHIYGGSGKQVQLEE 184

Query: 112 171
           
Sbjct: 188 184

Query: 172 223
           
Sbjct: 248 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT4G31460.13.7e-1053.57 Ribosomal L28 family[more]
Match NameE-valueIdentityDescription
gi|823122027|ref|XP_012469124.1|1.4e-1473.77PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii][more]
gi|449456779|ref|XP_004146126.1|2.3e-1476.67PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus][more]
gi|728825208|gb|KHG06146.1|3.0e-1472.1354S ribosomal L24, mitochondrial [Gossypium arboreum][more]
gi|590571460|ref|XP_007011601.1|6.8e-1471.19Ribosomal L28 family, putative [Theobroma cacao][more]
gi|147865450|emb|CAN79404.1|1.5e-1373.68hypothetical protein VITISV_028074 [Vitis vinifera][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla008867Cla008867gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0159292S1_0159292EST