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The following sequences are available for this feature:
transcribed_cluster sequence AGTAGACAATACATACCAACGCTTGGGGTCTTAGTAAAGCAATATGTTTGCTTGAAAGAAACGGTATCCCAGTTAGGGGAATTTTGACTCCAAACCAAGCACGTTCAGAAAAGGATTGAGAGTAGTTTCCTAATTCCCACTCAAGAATACTTGCAAGCCAAGTGTCACCCTTCTCAATGGCGGATGGAAGCATAAACTTTGTAATTAGGTATTGCTGAAGAGGTCCACCACGCCCTTCAACTAAATGACAAATAACCAGTGCAAGCTGCTCATCCCCGAGATTTTTTAGCGCAGACACTAACAGCAGAAGAAGTATCACCGCCAAAGCAGAAAGAAAGCAACAGCCAATTCTAGTTGATGTCTCCCCATTAAAACATAGGCATTCTTCAAAGCTGCTGCCTTATTTTTCTCCTCCTGAAAATTGCGTGAAAGAAATCCCACCAAGGGTTTATCTTTCTCATCCTT
BLAST of WMU58070 vs. TAIR10
Match: AT2G46560.1 (AT2G46560.1 transducin family protein / WD-40 repeat family protein) HSP 1 Score: 91.3 bits (225), Expect = 5.7e-19 Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = -3
Query: 5 KNLGDEQLALVICHLVEGRGGPLQQYLITKFMLPSAIEKGDTWLASILEWELGNYSQSFS 64
KNL DEQLALVIC L++G+GG L+ LI K++LPSA+++GD WLAS+L+WELG Y +S
Sbjct: 1348 KNLQDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSIL 1407
Query: 65 ERAWFGVKIPLTGIPFLSSKHIALLRPQ-ALVCIV 124
A ++ P T +SS H++ + P L C++
Sbjct: 1408 AMAGC-LENPATESSTVSSNHVSFVDPSIGLYCLM 1441
Query: 125 184
Sbjct: 1468 1441
Query: 185 244
Sbjct: 1528 1441
Query: 245 287
Sbjct: 1588 1441
BLAST of WMU58070 vs. NCBI nr
Match: gi|449433024|ref|XP_004134298.1| (PREDICTED: uncharacterized protein LOC101204824 isoform X1 [Cucumis sativus]) HSP 1 Score: 139.8 bits (351), Expect = 4.0e-30 Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = -3
Query: 5 KNLGDEQLALVICHLVEGRGGPLQQYLITKFMLPSAIEKGDTWLASILEWELGNYSQSFS 64
KNLGDEQLALVICHLVEGRGGPLQQ+LITKFMLPSAIEKGDTWLASILEWELGNY++SF
Sbjct: 1324 KNLGDEQLALVICHLVEGRGGPLQQHLITKFMLPSAIEKGDTWLASILEWELGNYTRSFL 1383
Query: 65 ERAWFGVKIPLTGIPFLSSKHIALLRPQ-ALVCIV 124
+TG PFLSSKHIALL P + C++
Sbjct: 1384 NMLRLDSN-SVTGPPFLSSKHIALLDPSVGMYCLL 1417
Query: 125 184
Sbjct: 1444 1417
Query: 185 244
Sbjct: 1504 1417
Query: 245 287
Sbjct: 1564 1417
BLAST of WMU58070 vs. NCBI nr
Match: gi|778676845|ref|XP_011650671.1| (PREDICTED: uncharacterized protein LOC101204824 isoform X2 [Cucumis sativus]) HSP 1 Score: 139.8 bits (351), Expect = 4.0e-30 Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = -3
Query: 5 KNLGDEQLALVICHLVEGRGGPLQQYLITKFMLPSAIEKGDTWLASILEWELGNYSQSFS 64
KNLGDEQLALVICHLVEGRGGPLQQ+LITKFMLPSAIEKGDTWLASILEWELGNY++SF
Sbjct: 1271 KNLGDEQLALVICHLVEGRGGPLQQHLITKFMLPSAIEKGDTWLASILEWELGNYTRSFL 1330
Query: 65 ERAWFGVKIPLTGIPFLSSKHIALLRPQ-ALVCIV 124
+TG PFLSSKHIALL P + C++
Sbjct: 1331 NMLRLDSN-SVTGPPFLSSKHIALLDPSVGMYCLL 1364
Query: 125 184
Sbjct: 1391 1364
Query: 185 244
Sbjct: 1451 1364
Query: 245 287
Sbjct: 1511 1364
BLAST of WMU58070 vs. NCBI nr
Match: gi|659074931|ref|XP_008437873.1| (PREDICTED: uncharacterized protein LOC103483174 isoform X2 [Cucumis melo]) HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29 Identity = 70/87 (80.46%), Postives = 73/87 (83.91%), Query Frame = -3
Query: 26 KNLGDEQLALVICHLVEGRGGPLQQYLITKFMLPSAIEKGDTWLASILEWELGNYSQSFS 85
K LGDEQLALVICHLVEGRGGPLQQ+LITKFMLPSAIEKGDTWLASILEWELGNY+QSF
Sbjct: 1271 KTLGDEQLALVICHLVEGRGGPLQQHLITKFMLPSAIEKGDTWLASILEWELGNYTQSFL 1330
Query: 86 ERAWFGVKIPLTGIPFLSSKHIALLRP 145
+TG PFLSSKHIALL P
Sbjct: 1331 NVLRLESN-SVTGPPFLSSKHIALLDP 1356
Query: 146 205
Sbjct: 1391 1356
Query: 206 265
Sbjct: 1451 1356
Query: 266 287
Sbjct: 1511 1356
BLAST of WMU58070 vs. NCBI nr
Match: gi|659074929|ref|XP_008437872.1| (PREDICTED: uncharacterized protein LOC103483174 isoform X1 [Cucumis melo]) HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29 Identity = 70/87 (80.46%), Postives = 73/87 (83.91%), Query Frame = -3
Query: 26 KNLGDEQLALVICHLVEGRGGPLQQYLITKFMLPSAIEKGDTWLASILEWELGNYSQSFS 85
K LGDEQLALVICHLVEGRGGPLQQ+LITKFMLPSAIEKGDTWLASILEWELGNY+QSF
Sbjct: 1324 KTLGDEQLALVICHLVEGRGGPLQQHLITKFMLPSAIEKGDTWLASILEWELGNYTQSFL 1383
Query: 86 ERAWFGVKIPLTGIPFLSSKHIALLRP 145
+TG PFLSSKHIALL P
Sbjct: 1384 NVLRLESN-SVTGPPFLSSKHIALLDP 1409
Query: 146 205
Sbjct: 1444 1409
Query: 206 265
Sbjct: 1504 1409
Query: 266 287
Sbjct: 1564 1409
BLAST of WMU58070 vs. NCBI nr
Match: gi|1009142479|ref|XP_015888745.1| (PREDICTED: uncharacterized protein LOC107423659 isoform X1 [Ziziphus jujuba]) HSP 1 Score: 120.6 bits (301), Expect = 2.5e-24 Identity = 66/121 (54.55%), Postives = 74/121 (61.16%), Query Frame = -3
Query: 8 GETSTRIGCCFXXXXXXXXXXXXXXXXKNLGDEQLALVICHLVEGRGGPLQQYLITKFML 67
G+TS+ I C KNLGDEQLALVIC LVEGRGG L+ YLITKF+L
Sbjct: 1364 GDTSSAINVC----------------AKNLGDEQLALVICRLVEGRGGQLEHYLITKFIL 1423
Query: 68 PSAIEKGDTWLASILEWELGNYSQSFSERAWFGVKIPLTGIPFLSSKHIALLRPQ-ALVC 127
PS IEKGD WLAS+LEWELGNYSQSF F + P + S HIA L P L C
Sbjct: 1424 PSTIEKGDCWLASLLEWELGNYSQSFKNMLGFQIN-SANEKPAIISSHIAFLEPNIGLYC 1467
Query: 128 I 187
+
Sbjct: 1484 L 1467
Query: 188 247
Sbjct: 1544 1467
Query: 248 307
Sbjct: 1604 1467
Query: 308 367
Sbjct: 1664 1467
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| AT2G46560.1 | 5.7e-19 | 48.42 | transducin family protein / WD-40 repeat family protein | [more] |
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR022033 | Rav1p_C |
This transcribed_cluster is associated with the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Cla021144 | Cla021144 | gene |
The following EST feature(s) are a part of this transcribed_cluster:
| Feature Name | Unique Name | Type |
|---|
| S1_0155172 | S1_0155172 | EST |
Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR022033 | RAVE complex protein Rav1 C-terminal | PFAM | PF12234 | Rav1p_C | coord: 6..118
score: 1.3 |
| None | No IPR available | PANTHER | PTHR13950 | RABCONNECTIN-RELATED | coord: 1..121
score: 2.0 |
| None | No IPR available | PANTHER | PTHR13950:SF9 | RABCONNECTIN-3A | coord: 1..121
score: 2.0 |
|
