WMU58002 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU58002
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Guanosine-3'5'-bis(Diphosphate) 3'-pyrophosphohydrolase
Location	Chr5 : 6708449 .. 6709396 (-)
Sequence length	353

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CAAAAACAGGTCGAGTTCATACGCAGCTTGGAGAAAAGAGATGATCAATACAAGGCCATCCTCAACCATAAGCTCCAAAATGAGGACGACGCTGACGACAGTGGTTTGATACAGGTCTATAGTGAAGAGCTCGGTAATCGACTTGCAACATAGTCTCGGTCTCGGACCTAATTTATCTCAACAAGGGTAGGAAATTAAATTTATTTTGAACTACATATCTATCCTCATTATTGTGAATAATTTGTTTATAAAGTTGAAAAGCAAGTCAATTCCTGTGCAGCATTATGATTTTGGAAGTTATATTTTCATCAGAAAATGTACATATGAAAAGAATCCAAATAGAATGAACTAAA

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

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BLAST of WMU58002 vs. TAIR10
Match: AT3G17470.1 (AT3G17470.1 Ca2+-activated RelA/spot homolog)

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-08
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 1


Query: 1   QKQVEFIRSLEKRDDQYKAILNHKLQNEDDADDSGLIQVYSEELGNRLA 60
           QKQVEF+R  E RD++YK++L+ KL +    D +GLIQ+Y++EL +RL+
Sbjct: 533 QKQVEFMRKWEDRDNEYKSLLDEKLHDLPHQDTTGLIQLYNKELEDRLS 581

Query: 61   120
           
Sbjct: 593  581

Query: 121  148
           
Sbjct: 653  581

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BLAST of WMU58002 vs. Swiss-Prot
Match: CRSH_ARATH (Probable GTP diphosphokinase CRSH, chloroplastic OS=Arabidopsis thaliana GN=CRSH PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 1


Query: 1   QKQVEFIRSLEKRDDQYKAILNHKLQNEDDADDSGLIQVYSEELGNRLA 60
           QKQVEF+R  E RD++YK++L+ KL +    D +GLIQ+Y++EL +RL+
Sbjct: 533 QKQVEFMRKWEDRDNEYKSLLDEKLHDLPHQDTTGLIQLYNKELEDRLS 581

Query: 61   120
           
Sbjct: 593  581

Query: 121  148
           
Sbjct: 653  581

[Close]

BLAST of WMU58002 vs. Swiss-Prot
Match: CRSH1_ORYSJ (Probable GTP diphosphokinase CRSH1, chloroplastic OS=Oryza sativa subsp. japonica GN=CRSH1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.7e-06
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 1   QKQVEFIRSLEKRDDQYKAILNHKLQNEDDADDSGLIQVYSEELGNRL 60
           Q+Q+E +RSL+ +DD+Y+ IL  KLQ  D A   GLIQVY ++LG++L
Sbjct: 536 QRQIELMRSLDDKDDRYRKILKEKLQTIDSA---GLIQVYRKQLGDKL 580

Query: 61   120
           
Sbjct: 596  580

Query: 121  145
           
Sbjct: 656  580

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BLAST of WMU58002 vs. NCBI nr
Match: gi|659077050|ref|XP_008439005.1| (PREDICTED: uncharacterized protein LOC103483930 isoform X1 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-13
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 1   QKQVEFIRSLEKRDDQYKAILNHKLQNEDDADDSGLIQVYSEELGNRLA 60
           QKQVEFIRSLE RDDQYKAILNHKLQN+   DDSGLIQVYSEELGNRLA
Sbjct: 622 QKQVEFIRSLENRDDQYKAILNHKLQND---DDSGLIQVYSEELGNRLA 667

Query: 61   120
           
Sbjct: 682  667

Query: 121  148
           
Sbjct: 742  667

[Close]

BLAST of WMU58002 vs. NCBI nr
Match: gi|659077052|ref|XP_008439006.1| (PREDICTED: uncharacterized protein LOC103483930 isoform X2 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-13
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 1   QKQVEFIRSLEKRDDQYKAILNHKLQNEDDADDSGLIQVYSEELGNRLA 60
           QKQVEFIRSLE RDDQYKAILNHKLQN+   DDSGLIQVYSEELGNRLA
Sbjct: 542 QKQVEFIRSLENRDDQYKAILNHKLQND---DDSGLIQVYSEELGNRLA 587

Query: 61   120
           
Sbjct: 602  587

Query: 121  148
           
Sbjct: 662  587

[Close]

BLAST of WMU58002 vs. NCBI nr
Match: gi|449459802|ref|XP_004147635.1| (PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 1   QKQVEFIRSLEKRDDQYKAILNHKLQNEDDADDSGLIQVYSEELGNRLA 60
           QKQVEFIRSLE RDDQYK ILNHKLQN+   DD+GLIQVYSEELGNRLA
Sbjct: 545 QKQVEFIRSLENRDDQYKVILNHKLQND---DDTGLIQVYSEELGNRLA 590

Query: 61   120
           
Sbjct: 605  590

Query: 121  148
           
Sbjct: 665  590

[Close]

BLAST of WMU58002 vs. NCBI nr
Match: gi|700202080|gb|KGN57213.1| (hypothetical protein Csa_3G171210 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 1   QKQVEFIRSLEKRDDQYKAILNHKLQNEDDADDSGLIQVYSEELGNRLA 60
           QKQVEFIRSLE RDDQYK ILNHKLQN+   DD+GLIQVYSEELGNRLA
Sbjct: 526 QKQVEFIRSLENRDDQYKVILNHKLQND---DDTGLIQVYSEELGNRLA 571

Query: 61   120
           
Sbjct: 586  571

Query: 121  148
           
Sbjct: 646  571

[Close]

BLAST of WMU58002 vs. NCBI nr
Match: gi|1000966336|ref|XP_002519327.2| (PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic [Ricinus communis])

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-08
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 1   QKQVEFIRSLEKRDDQYKAILNHKLQNEDDADDSGLIQVYSEELGNRLA 60
           QKQVEF+R+LE RDD+YK++LN KL+    A++SGLIQVYS+ELGNRLA
Sbjct: 521 QKQVEFMRALEDRDDEYKSMLNEKLKM---AENSGLIQVYSKELGNRLA 566

Query: 61   120
           
Sbjct: 581  566

Query: 121  148
           
Sbjct: 641  566

The following BLAST results are available for this feature:

BLAST of WMU58002 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17470.1	5.9e-08	51.02	Ca2+-activated RelA/spot homolog	[more]

BLAST of WMU58002 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRSH_ARATH	1.0e-06	51.02	Probable GTP diphosphokinase CRSH, chloroplastic OS=Arabidopsis thaliana GN=CRSH...	[more]
CRSH1_ORYSJ	6.7e-06	52.08	Probable GTP diphosphokinase CRSH1, chloroplastic OS=Oryza sativa subsp. japonic...	[more]

BLAST of WMU58002 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077050\|ref\|XP_008439005.1\|	4.4e-13	89.80	PREDICTED: uncharacterized protein LOC103483930 isoform X1 [Cucumis melo]	[more]
gi\|659077052\|ref\|XP_008439006.1\|	4.4e-13	89.80	PREDICTED: uncharacterized protein LOC103483930 isoform X2 [Cucumis melo]	[more]
gi\|449459802\|ref\|XP_004147635.1\|	2.8e-12	85.71	PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic [Cucumis sativus]	[more]
gi\|700202080\|gb\|KGN57213.1\|	2.8e-12	85.71	hypothetical protein Csa_3G171210 [Cucumis sativus]	[more]
gi\|1000966336\|ref\|XP_002519327.2\|	9.4e-08	69.39	PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021835	Cla021835	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0154158	S1_0154158	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21262	GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE	coord: 1..48 score: 5.3
None	No IPR available	PANTHER	PTHR21262:SF12	CA2+-ACTIVATED RELA/SPOT-LIKE PROTEIN	coord: 1..48 score: 5.3