WMU57881 (transcribed_cluster) Watermelon (97103) v1

NameWMU57881
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTrichome birefringence-like 13
LocationChr9 : 21651616 .. 21652003 (-)
Sequence length399
The following sequences are available for this feature:

transcribed_cluster sequence

TGGGGTGAATAGAGAAGCAAAGAAACAAATAAAACCGTCTCATTGACGAGGCAATACGTGACACAGATATTGAGGTTCTTGATCTCACTCACTTGAGTGAGTTCAGGGCAGATGCTCATCCAGCCATTTTGGTTGGGAAGAAAAGATGCAGTGGCAGTTTTGGGGACAGGACTGCATGCATTGGTGCTTACCAGGAGTCCCAGATACGTGGGTTGATATTTTGTCCCAACTCATCAGTCATCACTTAGAGACGAGATAGTTGACGATAAGGATGTATTCATTTACGAGTTCAAGATGTTTGCAGATTTTCACGAAGATCCCAAATGAAGTTCTGGTTCTTGAATCATTAAGACATTGACAAGATAAAAGGGGCATGGCTATTTTTGTGAGAGCCTATTT
BLAST of WMU57881 vs. TAIR10
Match: AT5G64470.2 (AT5G64470.2 Plant protein of unknown function (DUF828))

HSP 1 Score: 64.7 bits (156), Expect = 4.9e-11
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 2

Query: 161 WGQDCMHWCLPGVPDTWVDILSQLISHHLET 220
           WGQDCMHWCLPGVPDTWVDIL++LI  +L+T
Sbjct: 376 WGQDCMHWCLPGVPDTWVDILAELILTNLKT 406

Query: 221 254
           
Sbjct: 436 406


HSP 2 Score: 55.8 bits (133), Expect = 2.3e-08
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 3

Query: 9   IEKQRNK*NRLIDEAIRDTDIEVLDLTHLSEFRADAHPAILVGKKRCSGSFG 68
           + K+  K N++I   ++ T I++LDLTHLSEFRADAHPAI +GK+     +G
Sbjct: 326 VNKEARKINQIIKNELQTTKIKLLDLTHLSEFRADAHPAIWLGKQDAVAIWG 377

Query: 69  128
           
Sbjct: 386 377

Query: 129 165
           
Sbjct: 446 377

BLAST of WMU57881 vs. TAIR10
Match: AT5G06230.1 (AT5G06230.1 TRICHOME BIREFRINGENCE-LIKE 9)

HSP 1 Score: 48.1 bits (113), Expect = 4.7e-06
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 2

Query: 167 QDCMHWCLPGVPDTWVDIL-SQLISHHLETR 226
           QDC HWCLPGVPDTW +IL +QL+S +  T+
Sbjct: 383 QDCSHWCLPGVPDTWNEILYAQLLSMNYRTK 413

Query: 227 257
           
Sbjct: 443 413

BLAST of WMU57881 vs. Swiss-Prot
Match: TBL12_ARATH (Protein trichome birefringence-like 12 OS=Arabidopsis thaliana GN=TBL12 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.7e-10
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 2

Query: 161 WGQDCMHWCLPGVPDTWVDILSQLISHHLET 220
           WGQDCMHWCLPGVPDTWVDIL++LI  +L+T
Sbjct: 376 WGQDCMHWCLPGVPDTWVDILAELILTNLKT 406

Query: 221 254
           
Sbjct: 436 406


HSP 2 Score: 55.8 bits (133), Expect = 4.0e-07
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 3

Query: 9   IEKQRNK*NRLIDEAIRDTDIEVLDLTHLSEFRADAHPAILVGKKRCSGSFG 68
           + K+  K N++I   ++ T I++LDLTHLSEFRADAHPAI +GK+     +G
Sbjct: 326 VNKEARKINQIIKNELQTTKIKLLDLTHLSEFRADAHPAIWLGKQDAVAIWG 377

Query: 69  128
           
Sbjct: 386 377

Query: 129 165
           
Sbjct: 446 377

BLAST of WMU57881 vs. NCBI nr
Match: gi|659110192|ref|XP_008455098.1| (PREDICTED: protein trichome birefringence-like 12 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 161 WGQDCMHWCLPGVPDTWVDILSQLISHHLE 220
           WGQDCMHWCLPGVPDTWVDILS+LISHHL+
Sbjct: 369 WGQDCMHWCLPGVPDTWVDILSKLISHHLK 398

Query: 221 251
           
Sbjct: 429 398

BLAST of WMU57881 vs. NCBI nr
Match: gi|307136445|gb|ADN34250.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 161 WGQDCMHWCLPGVPDTWVDILSQLISHHLE 220
           WGQDCMHWCLPGVPDTWVDILS+LISHHL+
Sbjct: 283 WGQDCMHWCLPGVPDTWVDILSKLISHHLK 312

Query: 221 251
           
Sbjct: 343 312

BLAST of WMU57881 vs. NCBI nr
Match: gi|449438268|ref|XP_004136911.1| (PREDICTED: protein trichome birefringence-like 12 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 8.7e-10
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 161 WGQDCMHWCLPGVPDTWVDILSQLISHHLE 220
           WGQDCMHWCLPGVPDTWVDILS+LI+HHL+
Sbjct: 369 WGQDCMHWCLPGVPDTWVDILSKLITHHLK 398

Query: 221 251
           
Sbjct: 429 398

BLAST of WMU57881 vs. NCBI nr
Match: gi|1021023882|gb|KZM81670.1| (hypothetical protein DCAR_029283 [Daucus carota subsp. sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 2

Query: 161 WGQDCMHWCLPGVPDTWVDILSQLISHHLETR 220
           WGQDCMHWCLPGVPDTWVDILSQLI   LETR
Sbjct: 371 WGQDCMHWCLPGVPDTWVDILSQLIRDSLETR 402

Query: 221 257
           
Sbjct: 431 402

BLAST of WMU57881 vs. NCBI nr
Match: gi|747081451|ref|XP_011087997.1| (PREDICTED: protein trichome birefringence-like 12 [Sesamum indicum])

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 161 WGQDCMHWCLPGVPDTWVDILSQLISHHLE 220
           WGQDCMHWCLPGVPDTWVDIL+QLIS++LE
Sbjct: 373 WGQDCMHWCLPGVPDTWVDILTQLISYNLE 402

Query: 221 251
           
Sbjct: 433 402

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G64470.24.9e-1180.65 Plant protein of unknown function (DUF828)[more]
AT5G06230.14.7e-0664.52 TRICHOME BIREFRINGENCE-LIKE 9[more]
Match NameE-valueIdentityDescription
TBL12_ARATH8.7e-1080.65Protein trichome birefringence-like 12 OS=Arabidopsis thaliana GN=TBL12 PE=2 SV=... [more]
Match NameE-valueIdentityDescription
gi|659110192|ref|XP_008455098.1|3.9e-1093.33PREDICTED: protein trichome birefringence-like 12 [Cucumis melo][more]
gi|307136445|gb|ADN34250.1|3.9e-1093.33hypothetical protein [Cucumis melo subsp. melo][more]
gi|449438268|ref|XP_004136911.1|8.7e-1090.00PREDICTED: protein trichome birefringence-like 12 [Cucumis sativus][more]
gi|1021023882|gb|KZM81670.1|1.5e-0990.63hypothetical protein DCAR_029283 [Daucus carota subsp. sativus][more]
gi|747081451|ref|XP_011087997.1|3.3e-0990.00PREDICTED: protein trichome birefringence-like 12 [Sesamum indicum][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla012952Cla012952gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0152478S1_0152478EST