WMU57837 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU57837
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionE3 ubiquitin-protein ligase
LocationChr6 : 1197309 .. 1197748 (+)
Sequence length446
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GGAGGGAAACCCTCGAAGCATTCGGGACAACCACAAAAAAGTCAGAGACAGCCACGATGGCCTCATTATACAACGAAACATGGCACTCTTCTTCTCGGGAGGGGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTTGGAAAGAACAAAATAAACAGTAAAATTGTTAGAGATTCAACTCTATGTTTGTGACTGTTACGCATAACATTTTGCTTCAACTTTTAATCCAGCAGAAGCCAAATACTTAGAATCAGTTCATATTTATTTTTCAAACCTAACGGAAAAGGCCTTGAAAGTGAAACCATTTCCAAATTGGAGGCCCCAATATTACAAGTGTGCCCAAAGTTCTTAAAACCATTTCCAATTCCAACTTCTTGTAATTGAGATTAGCTTTTGTAATGTCAAAACATTGAGAGGCCTTTGTTCGAAAACTGTTTTCA
Homology
[Close]
BLAST of WMU57837 vs. TAIR10
Match: AT3G61790.1 (AT3G61790.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 90.5 bits (223), Expect = 9.3e-19
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           EG PRS+RD+H+KVRDSHDGLIIQRNMALFFSGG+RKELKLR+TGRI
Sbjct: 261 EGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRI 307

Query: 62   121
           
Sbjct: 321  307

Query: 122  143
           
Sbjct: 381  307

[Close]
BLAST of WMU57837 vs. TAIR10
Match: AT5G53360.1 (AT5G53360.1 TRAF-like superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-18
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           EG PRS+RD+H+KVRDSHDGLIIQRNMALFFSGG++KELKLR+TGRI
Sbjct: 168 EGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRI 214

Query: 62   121
           
Sbjct: 228  214

Query: 122  143
           
Sbjct: 288  214

[Close]
BLAST of WMU57837 vs. TAIR10
Match: AT4G27880.1 (AT4G27880.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-17
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           EG PRSIRD+H+KVRDS+DGLIIQRNMALFFSGG+RKELKLR+TG+I
Sbjct: 262 EGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKI 308

Query: 62   121
           
Sbjct: 322  308

Query: 122  143
           
Sbjct: 382  308

[Close]
BLAST of WMU57837 vs. TAIR10
Match: AT3G58040.1 (AT3G58040.1 seven in absentia of Arabidopsis 2)

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-15
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           +G PRSIRD+H+KVRDS DGLII RN+AL+FSGG+R+ELKLR+TGRI
Sbjct: 258 QGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRI 304

Query: 62   121
           
Sbjct: 318  304

Query: 122  143
           
Sbjct: 378  304

[Close]
BLAST of WMU57837 vs. TAIR10
Match: AT2G41980.1 (AT2G41980.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-14
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           +G PRSIRD+H+KVRDS DGLII RN+AL+FSG +++ELKLR+TGRI
Sbjct: 255 QGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGRI 301

Query: 62   121
           
Sbjct: 315  301

Query: 122  143
           
Sbjct: 375  301

[Close]
BLAST of WMU57837 vs. Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-17
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           EG PRS+RD+H+KVRDSHDGLIIQRNMALFFSGG+RKELKLR+TGRI
Sbjct: 261 EGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRI 307

Query: 62   121
           
Sbjct: 321  307

Query: 122  143
           
Sbjct: 381  307

[Close]
BLAST of WMU57837 vs. Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-17
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           EG PRS+RD+H+KVRDSHDGLIIQRNMALFFSGG++KELKLR+TGRI
Sbjct: 244 EGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRI 290

Query: 62   121
           
Sbjct: 304  290

Query: 122  143
           
Sbjct: 364  290

[Close]
BLAST of WMU57837 vs. Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-16
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           EG PRSIRD+H+KVRDS+DGLIIQRNMALFFSGG+RKELKLR+TG+I
Sbjct: 262 EGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKI 308

Query: 62   121
           
Sbjct: 322  308

Query: 122  143
           
Sbjct: 382  308

[Close]
BLAST of WMU57837 vs. Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-14
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           +G PRSIRD+H+KVRDS DGLII RN+AL+FSGG+R+ELKLR+TGRI
Sbjct: 258 QGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRI 304

Query: 62   121
           
Sbjct: 318  304

Query: 122  143
           
Sbjct: 378  304

[Close]
BLAST of WMU57837 vs. Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-13
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           +G PRSIRD+H+KVRDS DGLII RN+AL+FSG +++ELKLR+TGRI
Sbjct: 255 QGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGRI 301

Query: 62   121
           
Sbjct: 315  301

Query: 122  143
           
Sbjct: 375  301

[Close]
BLAST of WMU57837 vs. NCBI nr
Match: gi|449445654|ref|XP_004140587.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT3 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI
Sbjct: 251 EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 297

Query: 62   121
           
Sbjct: 311  297

Query: 122  143
           
Sbjct: 371  297

[Close]
BLAST of WMU57837 vs. NCBI nr
Match: gi|659120058|ref|XP_008459990.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 61
           EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI
Sbjct: 251 EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRI 297

Query: 62   121
           
Sbjct: 311  297

Query: 122  143
           
Sbjct: 371  297

[Close]
BLAST of WMU57837 vs. NCBI nr
Match: gi|657968765|ref|XP_008376089.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT3 isoform X1 [Malus domestica])

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-17
Identity = 45/49 (91.84%), Postives = 49/49 (100.00%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRILE 61
           EGNPRSIRD+HKKVRDSHDGLIIQRNMALFFSGG+RKELKLR+TGRIL+
Sbjct: 252 EGNPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRILK 300

Query: 62   121
           
Sbjct: 312  300

Query: 122  149
           
Sbjct: 372  300

[Close]
BLAST of WMU57837 vs. NCBI nr
Match: gi|657968767|ref|XP_008376090.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT3 isoform X2 [Malus domestica])

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-17
Identity = 45/49 (91.84%), Postives = 49/49 (100.00%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRILE 61
           EGNPRSIRD+HKKVRDSHDGLIIQRNMALFFSGG+RKELKLR+TGRIL+
Sbjct: 252 EGNPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRILK 300

Query: 62   121
           
Sbjct: 312  300

Query: 122  149
           
Sbjct: 372  300

[Close]
BLAST of WMU57837 vs. NCBI nr
Match: gi|645254666|ref|XP_008233142.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT3 isoform X1 [Prunus mume])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 2 

Query: 2   EGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIL--ERTK*TVKLL 61
           EGNPRSIRD+HKKVRDSHDGLIIQRNMALFFSGG+RKELKLR+TGRI   ++     K+ 
Sbjct: 250 EGNPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGAKVC 309

Query: 62  EIQLYVC 121
           E+   +C
Sbjct: 310 EVPRIIC 316

Query: 122  181
           
Sbjct: 370  316

Query: 182  197
           
Sbjct: 430  316

The following BLAST results are available for this feature:
BLAST of WMU57837 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61790.19.3e-1987.23 Protein with RING/U-box and TRAF-like domains[more]
AT5G53360.12.1e-1885.11 TRAF-like superfamily protein[more]
AT4G27880.11.0e-1785.11 Protein with RING/U-box and TRAF-like domains[more]
AT3G58040.12.2e-1576.60 seven in absentia of Arabidopsis 2[more]
AT2G41980.12.4e-1472.34 Protein with RING/U-box and TRAF-like domains[more]
BLAST of WMU57837 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SINA3_ARATH1.7e-1787.23E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1[more]
SINA5_ARATH3.7e-1785.11E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2[more]
SINA4_ARATH1.8e-1685.11E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1[more]
SINA2_ARATH3.8e-1476.60E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1[more]
SINA1_ARATH4.2e-1372.34Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE... [more]
BLAST of WMU57837 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445654|ref|XP_004140587.1|2.2e-17100.00PREDICTED: E3 ubiquitin-protein ligase SINAT3 [Cucumis sativus][more]
gi|659120058|ref|XP_008459990.1|2.2e-17100.00PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Cucumis melo][more]
gi|657968765|ref|XP_008376089.1|6.3e-1791.84PREDICTED: E3 ubiquitin-protein ligase SINAT3 isoform X1 [Malus domestica][more]
gi|657968767|ref|XP_008376090.1|6.3e-1791.84PREDICTED: E3 ubiquitin-protein ligase SINAT3 isoform X2 [Malus domestica][more]
gi|645254666|ref|XP_008233142.1|1.1e-1670.15PREDICTED: E3 ubiquitin-protein ligase SINAT3 isoform X1 [Prunus mume][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla007049Cla007049gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0151892S1_0151892EST