WMU57708 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU57708
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ferredoxin--NADP reductase
Location	Chr1 : 17742320 .. 17742536 (-)
Sequence length	225

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCCGTACCAACATTTCTAAATTTCGGTTGGCCTTTGCTTTGGCTTGTTTCTGGGAGTGGCAAACACTGATAGTCTTTTATATGACGATGAATTCAGCAAGTATCTTAAGGACTATCCAGATAACTTCCGCTATGATCGAGCTCTTAGCAGGGAGCAAAAGAACAAGAGTGGAGGAAAAAATGTAATGTCCAGGACAAGATTGAGGAGTACGGCGACGAAATCTTT

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

[Close]

BLAST of WMU57708 vs. TAIR10
Match: AT1G30510.2 (AT1G30510.2 root FNR 2)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-17
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVANTDSLLYD+EF+KYLKD+PDNFR+D+ALSRE+KNK GGK
Sbjct: 269 LFLGVANTDSLLYDEEFTKYLKDHPDNFRFDKALSREEKNKKGGK 313

Query: 104  163
           
Sbjct: 329  313

Query: 164  179
           
Sbjct: 389  313

HSP 2 Score: 29.6 bits (65), Expect = 9.9e-01
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 1


Query: 154 AKEQEWRK--KCNVQDKIEEYGDEIF 213
           ++E++ +K  K  VQDKIEEY DEIF
Sbjct: 303 SREEKNKKGGKMYVQDKIEEYSDEIF 328

Query: 214  226
           
Sbjct: 363  328

[Close]

BLAST of WMU57708 vs. TAIR10
Match: AT4G05390.1 (AT4G05390.1 root FNR 1)

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-16
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVAN+DSLLYD+EF+ Y KDYP+NFRYD+ALSRE+KNK GGK
Sbjct: 265 LFLGVANSDSLLYDEEFAGYRKDYPENFRYDKALSREEKNKKGGK 309

Query: 104  163
           
Sbjct: 325  309

Query: 164  179
           
Sbjct: 385  309

HSP 2 Score: 29.6 bits (65), Expect = 9.9e-01
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 1


Query: 154 AKEQEWRK--KCNVQDKIEEYGDEIF 213
           ++E++ +K  K  VQDKIEEY DEIF
Sbjct: 299 SREEKNKKGGKMYVQDKIEEYSDEIF 324

Query: 214  226
           
Sbjct: 359  324

[Close]

BLAST of WMU57708 vs. TAIR10
Match: AT5G66190.1 (AT5G66190.1 ferredoxin-NADP(+)-oxidoreductase 1)

HSP 1 Score: 53.1 bits (126), Expect = 8.3e-08
Identity = 26/45 (57.78%), Postives = 29/45 (64.44%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGV  + SLLY +EF K  +  PDNFR D A+SREQ N+ G K
Sbjct: 246 LFLGVPTSSSLLYKEEFEKMKEKNPDNFRLDFAVSREQTNEKGEK 290

Query: 104  163
           
Sbjct: 306  290

Query: 164  179
           
Sbjct: 366  290

[Close]

BLAST of WMU57708 vs. TAIR10
Match: AT1G20020.1 (AT1G20020.1 ferredoxin-NADP(+)-oxidoreductase 2)

HSP 1 Score: 53.1 bits (126), Expect = 8.3e-08
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGKNVMSRTRLRSTATK 103
           LFLGV  T SLLY +EF K     P+NFR D A+SREQ N  G K +  +TR+   A +
Sbjct: 255 LFLGVPTTSSLLYQEEFDKMKAKAPENFRVDYAISREQANDKGEK-MYIQTRMAQYAAE 312

Query: 104  163
           
Sbjct: 315  312

Query: 164  221
           
Sbjct: 375  312

[Close]

BLAST of WMU57708 vs. Swiss-Prot
Match: FENR2_PEA (Ferredoxin--NADP reductase, root isozyme, chloroplastic OS=Pisum sativum PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-17
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVAN DSLLYDDEF+KYLKDYPDNFRY+RALSRE+KNK+GGK
Sbjct: 264 LFLGVANVDSLLYDDEFTKYLKDYPDNFRYNRALSREEKNKNGGK 308

Query: 104  163
           
Sbjct: 324  308

Query: 164  179
           
Sbjct: 384  308

HSP 2 Score: 29.3 bits (64), Expect = 2.3e+01
Identity = 13/16 (81.25%), Postives = 11/16 (68.75%), Query Frame = 1


Query: 178 KCNVQDKIEEYGDEIF 226
           K  VQDKIEEY DEIF
Sbjct: 308 KMYVQDKIEEYSDEIF 323

[Close]

BLAST of WMU57708 vs. Swiss-Prot
Match: FENR2_TOBAC (Ferredoxin--NADP reductase, root-type isozyme, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-16
Identity = 40/45 (88.89%), Postives = 39/45 (86.67%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVANTDSLLYDDEF+KYL DYP NFRYDRALSREQKN  GGK
Sbjct: 262 LFLGVANTDSLLYDDEFTKYLNDYPGNFRYDRALSREQKNNKGGK 306

Query: 104  163
           
Sbjct: 322  306

Query: 164  179
           
Sbjct: 382  306

HSP 2 Score: 30.0 bits (66), Expect = 1.3e+01
Identity = 16/26 (61.54%), Postives = 17/26 (65.38%), Query Frame = 1


Query: 154 AKEQEWRK--KCNVQDKIEEYGDEIF 213
           ++EQ+  K  K  VQDKIEEY DEIF
Sbjct: 296 SREQKNNKGGKMYVQDKIEEYSDEIF 321

Query: 214  226
           
Sbjct: 356  321

[Close]

BLAST of WMU57708 vs. Swiss-Prot
Match: FNRR2_ARATH (Ferredoxin--NADP reductase, root isozyme 2, chloroplastic OS=Arabidopsis thaliana GN=RFNR2 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-16
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVANTDSLLYD+EF+KYLKD+PDNFR+D+ALSRE+KNK GGK
Sbjct: 269 LFLGVANTDSLLYDEEFTKYLKDHPDNFRFDKALSREEKNKKGGK 313

Query: 104  163
           
Sbjct: 329  313

Query: 164  179
           
Sbjct: 389  313

HSP 2 Score: 29.6 bits (65), Expect = 1.8e+01
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 1


Query: 154 AKEQEWRK--KCNVQDKIEEYGDEIF 213
           ++E++ +K  K  VQDKIEEY DEIF
Sbjct: 303 SREEKNKKGGKMYVQDKIEEYSDEIF 328

Query: 214  226
           
Sbjct: 363  328

[Close]

BLAST of WMU57708 vs. Swiss-Prot
Match: FENR3_ORYSJ (Ferredoxin--NADP reductase, embryo isozyme, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0147900 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.5e-16
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVANTDSLLYD+EF+ YL+ YPDNFRYD+ALSREQKNK+GGK
Sbjct: 265 LFLGVANTDSLLYDEEFTNYLQQYPDNFRYDKALSREQKNKNGGK 309

Query: 104  163
           
Sbjct: 325  309

Query: 164  179
           
Sbjct: 385  309

HSP 2 Score: 29.3 bits (64), Expect = 2.3e+01
Identity = 13/16 (81.25%), Postives = 11/16 (68.75%), Query Frame = 1


Query: 178 KCNVQDKIEEYGDEIF 226
           K  VQDKIEEY DEIF
Sbjct: 309 KMYVQDKIEEYSDEIF 324

[Close]

BLAST of WMU57708 vs. Swiss-Prot
Match: FENR2_ORYSJ (Ferredoxin--NADP reductase, root isozyme, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0784700 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.9e-16
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVANTDSLLYD+EF+ YLK YPDNFRYD+ALSREQKNK+ GK
Sbjct: 265 LFLGVANTDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNKNAGK 309

Query: 104  163
           
Sbjct: 325  309

Query: 164  179
           
Sbjct: 385  309

HSP 2 Score: 29.3 bits (64), Expect = 2.3e+01
Identity = 13/16 (81.25%), Postives = 11/16 (68.75%), Query Frame = 1


Query: 178 KCNVQDKIEEYGDEIF 226
           K  VQDKIEEY DEIF
Sbjct: 309 KMYVQDKIEEYSDEIF 324

[Close]

BLAST of WMU57708 vs. NCBI nr
Match: gi|659078108|ref|XP_008439552.1| (PREDICTED: ferredoxin--NADP reductase, root isozyme, chloroplastic [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK
Sbjct: 266 LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 310

Query: 104  163
           
Sbjct: 326  310

Query: 164  179
           
Sbjct: 386  310

[Close]

BLAST of WMU57708 vs. NCBI nr
Match: gi|703106707|ref|XP_010098567.1| (Ferredoxin--NADP reductase, root isozyme [Morus notabilis])

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-16
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVANTDSLLYDDEF+KYLKDYPDNFRYDRALSREQKNKSGGK
Sbjct: 280 LFLGVANTDSLLYDDEFTKYLKDYPDNFRYDRALSREQKNKSGGK 324

Query: 104  163
           
Sbjct: 340  324

Query: 164  179
           
Sbjct: 400  324

[Close]

BLAST of WMU57708 vs. NCBI nr
Match: gi|571514213|ref|XP_006597058.1| (PREDICTED: uncharacterized protein LOC100807968 isoform X1 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 4.6e-16
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVANTDSLLYDDEFSKYLKDYPDNFRY+RALSREQKNKSGGK
Sbjct: 265 LFLGVANTDSLLYDDEFSKYLKDYPDNFRYNRALSREQKNKSGGK 309

Query: 104  163
           
Sbjct: 325  309

Query: 164  179
           
Sbjct: 385  309

[Close]

BLAST of WMU57708 vs. NCBI nr
Match: gi|358248040|ref|NP_001239798.1| (uncharacterized protein LOC100807968 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 4.6e-16
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVANTDSLLYDDEFSKYLKDYPDNFRY+RALSREQKNKSGGK
Sbjct: 264 LFLGVANTDSLLYDDEFSKYLKDYPDNFRYNRALSREQKNKSGGK 308

Query: 104  163
           
Sbjct: 324  308

Query: 164  179
           
Sbjct: 384  308

[Close]

BLAST of WMU57708 vs. NCBI nr
Match: gi|955365686|ref|XP_014622849.1| (PREDICTED: uncharacterized protein LOC100807968 isoform X2 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 4.6e-16
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2


Query: 44  LFLGVANTDSLLYDDEFSKYLKDYPDNFRYDRALSREQKNKSGGK 103
           LFLGVANTDSLLYDDEFSKYLKDYPDNFRY+RALSREQKNKSGGK
Sbjct: 256 LFLGVANTDSLLYDDEFSKYLKDYPDNFRYNRALSREQKNKSGGK 300

Query: 104  163
           
Sbjct: 316  300

Query: 164  179
           
Sbjct: 376  300

The following BLAST results are available for this feature:

BLAST of WMU57708 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30510.2	1.2e-17	84.44	root FNR 2	[more]
AT4G05390.1	2.8e-16	80.00	root FNR 1	[more]
AT5G66190.1	8.3e-08	57.78	ferredoxin-NADP(+)-oxidoreductase 1	[more]
AT1G20020.1	8.3e-08	49.15	ferredoxin-NADP(+)-oxidoreductase 2	[more]

BLAST of WMU57708 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FENR2_PEA	3.1e-17	88.89	Ferredoxin--NADP reductase, root isozyme, chloroplastic OS=Pisum sativum PE=2 SV...	[more]
FENR2_TOBAC	1.2e-16	88.89	Ferredoxin--NADP reductase, root-type isozyme, chloroplastic OS=Nicotiana tabacu...	[more]
FNRR2_ARATH	2.0e-16	84.44	Ferredoxin--NADP reductase, root isozyme 2, chloroplastic OS=Arabidopsis thalian...	[more]
FENR3_ORYSJ	3.5e-16	84.44	Ferredoxin--NADP reductase, embryo isozyme, chloroplastic OS=Oryza sativa subsp....	[more]
FENR2_ORYSJ	5.9e-16	84.44	Ferredoxin--NADP reductase, root isozyme, chloroplastic OS=Oryza sativa subsp. j...	[more]

BLAST of WMU57708 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078108\|ref\|XP_008439552.1\|	1.2e-16	100.00	PREDICTED: ferredoxin--NADP reductase, root isozyme, chloroplastic [Cucumis melo...	[more]
gi\|703106707\|ref\|XP_010098567.1\|	2.7e-16	97.78	Ferredoxin--NADP reductase, root isozyme [Morus notabilis]	[more]
gi\|571514213\|ref\|XP_006597058.1\|	4.6e-16	97.78	PREDICTED: uncharacterized protein LOC100807968 isoform X1 [Glycine max]	[more]
gi\|358248040\|ref\|NP_001239798.1\|	4.6e-16	97.78	uncharacterized protein LOC100807968 [Glycine max]	[more]
gi\|955365686\|ref\|XP_014622849.1\|	4.6e-16	97.78	PREDICTED: uncharacterized protein LOC100807968 isoform X2 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001433	OxRdtase_FAD/NAD-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla010998	Cla010998	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0150000	S1_0150000	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001433	Oxidoreductase FAD/NAD(P)-binding	PFAM	PF00175	NAD_binding_1	coord: 13..68 score: 1.
None	No IPR available	GENE3D	G3DSA:3.40.50.80		coord: 13..69 score: 5.
None	No IPR available	PANTHER	PTHR19384	FLAVODOXIN-RELATED	coord: 12..59 score: 5.0
None	No IPR available	PANTHER	PTHR19384:SF54	FERREDOXIN--NADP REDUCTASE, ROOT ISOZYME 1, CHLOROPLASTIC-RELATED	coord: 12..59 score: 5.0
None	No IPR available	unknown	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain	coord: 13..60 score: 1.1