WMU57430 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU57430
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Domain of Uncharacterized protein function
Location	Chr5 : 214622 .. 215071 (+)
Sequence length	462

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAGCGAACCCAACCATTCTAGTAACTTTAGTTGGGTTCGTTGGAAGGTTGTTTTGAAGTAAGTGGGACTCCGATTTTTGGTGAAGAGAGAGTGGAGGAGAGCAATGCAGGGGCTTACGTGTATCTGTGCACAGAAAACGTTGAAGAAAAGAAGGTTACCAGGAAATCCAGTATACTTTGGGGAGGAAGAGCTGATGGACATGCAGGATGTTACAATGCTGTGGCTTCCAGGTGGGGTCACTGCTTATGTTGATGTCAAAAAGGATGGCATCCTTTGTATTGGAGTGGGTTGGTACTCAGATGAGGGTATCAACCTTGTTATGGAGAGGGATTATGGATTCGATGGGAACCTCAAGGAAGTTAGGTGGAAAATCTGAATTAAAAGAGAAGATGGCCTGACCCATACCCCTTTGAATTGCCTTTTTCTTTTTTTCTTTTTTTCCTTTTTTTACTTCTTACTTCT

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

[Close]

BLAST of WMU57430 vs. TAIR10
Match: AT2G44760.1 (AT2G44760.1 Domain of unknown function (DUF3598))

HSP 1 Score: 137.9 bits (346), Expect = 5.3e-33
Identity = 64/84 (76.19%), Postives = 72/84 (85.71%), Query Frame = 2


Query: 134 KTLKKRRLPGNPVYFGEEELMDMQDVTMLWLPGGVTAYVDVKKDGILCIGVGWYSDEGIN 193
           + LK+R LP   V FGEEE++DMQDV+++WLPGGV+AYVDVKKDG+LCIGVGWYSDEGIN
Sbjct: 410 EALKRRNLPETLVSFGEEEMIDMQDVSVMWLPGGVSAYVDVKKDGVLCIGVGWYSDEGIN 469

Query: 194 LVMERDYGFDGNLKEVRWKI*IKR 253
           LVMERDYG DGNLKEVR K  +KR
Sbjct: 470 LVMERDYGLDGNLKEVRSKSEMKR 493

Query: 254  313
           
Sbjct: 530  493

Query: 314  373
           
Sbjct: 590  493

Query: 374  386
           
Sbjct: 650  493

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BLAST of WMU57430 vs. NCBI nr
Match: gi|449431948|ref|XP_004133762.1| (PREDICTED: uncharacterized protein LOC101217788 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 5.1e-38
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 2


Query: 134 KTLKKRRLPGNPVYFGEEELMDMQDVTMLWLPGGVTAYVDVKKDGILCIGVGWYSDEGIN 193
           +TLKKRRLP NPVYFGEEE+MDMQDVTMLWLPGGVTAYVDVK DGILCIGVGWYSDEGIN
Sbjct: 395 ETLKKRRLPENPVYFGEEEVMDMQDVTMLWLPGGVTAYVDVKNDGILCIGVGWYSDEGIN 454

Query: 194 LVMERDYGFDGNLKEVRWKI*IKR 253
           LVMERDYG DGNLKEVRWK  +KR
Sbjct: 455 LVMERDYGSDGNLKEVRWKSELKR 478

Query: 254  313
           
Sbjct: 515  478

Query: 314  373
           
Sbjct: 575  478

Query: 374  386
           
Sbjct: 635  478

[Close]

BLAST of WMU57430 vs. NCBI nr
Match: gi|659074741|ref|XP_008437771.1| (PREDICTED: uncharacterized protein LOC103483104 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 5.1e-38
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 2


Query: 134 KTLKKRRLPGNPVYFGEEELMDMQDVTMLWLPGGVTAYVDVKKDGILCIGVGWYSDEGIN 193
           +TLKKRRLP NPVYFGEEE+MDMQDVTMLWLPGGVTAYVDVK DGILCIGVGWYSDEGIN
Sbjct: 395 ETLKKRRLPENPVYFGEEEVMDMQDVTMLWLPGGVTAYVDVKNDGILCIGVGWYSDEGIN 454

Query: 194 LVMERDYGFDGNLKEVRWKI*IKR 253
           LVMERDYG DGNLKEVRWK  +KR
Sbjct: 455 LVMERDYGSDGNLKEVRWKSELKR 478

Query: 254  313
           
Sbjct: 515  478

Query: 314  373
           
Sbjct: 575  478

Query: 374  386
           
Sbjct: 635  478

[Close]

BLAST of WMU57430 vs. NCBI nr
Match: gi|700201207|gb|KGN56340.1| (hypothetical protein Csa_3G116770 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 5.1e-38
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 2


Query: 134 KTLKKRRLPGNPVYFGEEELMDMQDVTMLWLPGGVTAYVDVKKDGILCIGVGWYSDEGIN 193
           +TLKKRRLP NPVYFGEEE+MDMQDVTMLWLPGGVTAYVDVK DGILCIGVGWYSDEGIN
Sbjct: 430 ETLKKRRLPENPVYFGEEEVMDMQDVTMLWLPGGVTAYVDVKNDGILCIGVGWYSDEGIN 489

Query: 194 LVMERDYGFDGNLKEVRWKI*IKR 253
           LVMERDYG DGNLKEVRWK  +KR
Sbjct: 490 LVMERDYGSDGNLKEVRWKSELKR 513

Query: 254  313
           
Sbjct: 550  513

Query: 314  373
           
Sbjct: 610  513

Query: 374  386
           
Sbjct: 670  513

[Close]

BLAST of WMU57430 vs. NCBI nr
Match: gi|703062652|ref|XP_010086773.1| (hypothetical protein L484_001630 [Morus notabilis])

HSP 1 Score: 159.5 bits (402), Expect = 4.8e-36
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 2


Query: 134 KTLKKRRLPGNPVYFGEEELMDMQDVTMLWLPGGVTAYVDVKKDGILCIGVGWYSDEGIN 193
           +TLKKR LP NP+YFGEEE++DMQDVTMLWLP GVTAYVDVKKDGILCIGVGWYSDEGIN
Sbjct: 409 ETLKKRSLPDNPIYFGEEEMLDMQDVTMLWLPCGVTAYVDVKKDGILCIGVGWYSDEGIN 468

Query: 194 LVMERDYGFDGNLKEVRWKI*IKR 253
           LVMERDYG DG LKEVRWK  +KR
Sbjct: 469 LVMERDYGVDGKLKEVRWKSELKR 492

Query: 254  313
           
Sbjct: 529  492

Query: 314  373
           
Sbjct: 589  492

Query: 374  386
           
Sbjct: 649  492

[Close]

BLAST of WMU57430 vs. NCBI nr
Match: gi|657968165|ref|XP_008375778.1| (PREDICTED: uncharacterized protein LOC103439012 [Malus domestica])

HSP 1 Score: 158.7 bits (400), Expect = 8.2e-36
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 2


Query: 134 KTLKKRRLPGNPVYFGEEELMDMQDVTMLWLPGGVTAYVDVKKDGILCIGVGWYSDEGIN 193
           +TLKKR LPGNPVYFGEEE++DMQDVTMLWLPGGVTAYVDV KDGILCIGVGWYSDEGIN
Sbjct: 406 ETLKKRSLPGNPVYFGEEEMVDMQDVTMLWLPGGVTAYVDVNKDGILCIGVGWYSDEGIN 465

Query: 194 LVMERDYGFDGNLKEVRWKI*IKR 253
           LVMERDYG DG LKEVR K  +KR
Sbjct: 466 LVMERDYGVDGKLKEVRSKSEVKR 489

Query: 254  313
           
Sbjct: 526  489

Query: 314  373
           
Sbjct: 586  489

Query: 374  386
           
Sbjct: 646  489

The following BLAST results are available for this feature:

BLAST of WMU57430 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44760.1	5.3e-33	76.19	Domain of unknown function (DUF3598)	[more]

BLAST of WMU57430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431948\|ref\|XP_004133762.1\|	5.1e-38	90.48	PREDICTED: uncharacterized protein LOC101217788 [Cucumis sativus]	[more]
gi\|659074741\|ref\|XP_008437771.1\|	5.1e-38	90.48	PREDICTED: uncharacterized protein LOC103483104 [Cucumis melo]	[more]
gi\|700201207\|gb\|KGN56340.1\|	5.1e-38	90.48	hypothetical protein Csa_3G116770 [Cucumis sativus]	[more]
gi\|703062652\|ref\|XP_010086773.1\|	4.8e-36	85.71	hypothetical protein L484_001630 [Morus notabilis]	[more]
gi\|657968165\|ref\|XP_008375778.1\|	8.2e-36	86.90	PREDICTED: uncharacterized protein LOC103439012 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021077	Cla021077	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0145859	S1_0145859	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36025	FAMILY NOT NAMED	coord: 12..89 score: 4.3