WMU56632 (transcribed_cluster) Watermelon (97103) v1

NameWMU56632
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr11 : 21081023 .. 21081465 (-)
Sequence length449
The following sequences are available for this feature:

transcribed_cluster sequence

GAATCCAACTCTTAGATCTGTTGGAACAAAGAGCTAGAGATCTCATTCCAATATCAATTTTTTCTTCAAAGATGCAAACTCCAAACTATGACCAAATCTCTCAAAAATCCTTCCAAACCAAACATGAAGATTAGATTATTCACTAGGGCTCTATCCAAAGAGCTCAATTCCACCATCAACTACTCTTTTAGAGTCTATTAACGGACGGAGCCACCGGTGCAATTCCGTTCCGATGGGAGTCCCGACCAGGAACTCCAAAGCATACTTTTTCAGAAACTTCAATCCCTCCTCTTACTCCTCCTCCTTCTTACTATTCCACTTTTGCATTCTGCTTCCAAGGCCTCTTCCAAACCAACCCCTTTTGAGCTCCATTTTTCCTCGGCTCACGCCAAGGAAATCTCGAACCTCCCCGTCTTTCTCCTCTTCCTCGGCTCCTCCTCCTCCTCCTC
BLAST of WMU56632 vs. NCBI nr
Match: gi|659113809|ref|XP_008456767.1| (PREDICTED: uncharacterized serine-rich protein C215.13 isoform X2 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-10
Identity = 40/69 (57.97%), Postives = 44/69 (63.77%), Query Frame = 3

Query: 72  MQTPNYDQISQKSFQ-TKHED*IIH*GSIQRAXXXXXXXXXXXXTDGATGAIPFRWESRP 131
           MQT NYDQISQKS Q TKHED      ++ +               GATGAIPFRWESRP
Sbjct: 1   MQTQNYDQISQKSSQITKHEDRFFT-RALSKELNSTTNSSFRVYYGGATGAIPFRWESRP 60

Query: 132 GTPKHTFSE 191
           GTPKHTFS+
Sbjct: 61  GTPKHTFSD 68

Query: 192 251
           
Sbjct: 121 68

Query: 252 276
           
Sbjct: 181 68

BLAST of WMU56632 vs. NCBI nr
Match: gi|659113807|ref|XP_008456766.1| (PREDICTED: uncharacterized serine-rich protein C215.13 isoform X1 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-10
Identity = 40/69 (57.97%), Postives = 44/69 (63.77%), Query Frame = 3

Query: 72  MQTPNYDQISQKSFQ-TKHED*IIH*GSIQRAXXXXXXXXXXXXTDGATGAIPFRWESRP 131
           MQT NYDQISQKS Q TKHED      ++ +               GATGAIPFRWESRP
Sbjct: 1   MQTQNYDQISQKSSQITKHEDRFFT-RALSKELNSTTNSSFRVYYGGATGAIPFRWESRP 60

Query: 132 GTPKHTFSE 191
           GTPKHTFS+
Sbjct: 61  GTPKHTFSD 68

Query: 192 251
           
Sbjct: 121 68

Query: 252 276
           
Sbjct: 181 68

BLAST of WMU56632 vs. NCBI nr
Match: gi|778709655|ref|XP_011656432.1| (PREDICTED: putative protein TPRXL [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-09
Identity = 38/69 (55.07%), Postives = 44/69 (63.77%), Query Frame = 3

Query: 72  MQTPNYDQISQKSFQ-TKHED*IIH*GSIQRAXXXXXXXXXXXXTDGATGAIPFRWESRP 131
           M+T +YDQISQKSF  TKHED      ++ +               GATGAIPFRWESRP
Sbjct: 1   MKTQSYDQISQKSFPITKHEDKFFT-RALSKELNSTTNSSFRVYYGGATGAIPFRWESRP 60

Query: 132 GTPKHTFSE 191
           GTPKHTFS+
Sbjct: 61  GTPKHTFSD 68

Query: 192 251
           
Sbjct: 121 68

Query: 252 276
           
Sbjct: 181 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659113809|ref|XP_008456767.1|4.4e-1057.97PREDICTED: uncharacterized serine-rich protein C215.13 isoform X2 [Cucumis melo][more]
gi|659113807|ref|XP_008456766.1|4.4e-1057.97PREDICTED: uncharacterized serine-rich protein C215.13 isoform X1 [Cucumis melo][more]
gi|778709655|ref|XP_011656432.1|2.9e-0955.07PREDICTED: putative protein TPRXL [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla016414Cla016414gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0134699S1_0134699EST