WMU56073 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU56073
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr2 : 6584099 .. 6587201 (+)
Sequence length	330

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGAAATTGAGAATCTGCATTTTGGTTAAGCAGCTGAAGGAGAATGGGATTGGGCCGGTGAGGGAGTTTTTGCTTGCGTCCAACAAGAAAAGGTGTTCTCTAGAAGACCCATCTCCATTGGTAAAACAACCGGAAAGACTTGTTGTCGGAAAAAGAGGACTTCGATTAGACTCTTCTTTGTTTTTCCGATTCCGATTGCTTTTTGGGATCTCGCCGGTGAACTCGTTGCTCGTGAATGTGAGGTACCGAGCAGGGGTGTTGCCGAGGTTGGCCGGTATGTTGTGATTAAACTTATCGTTGTTGAGGAAGATAGCTGTGATGATGTCCATAT

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

[Close]

BLAST of WMU56073 vs. TAIR10
Match: AT3G19320.1 (AT3G19320.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 71.2 bits (173), Expect = 4.3e-13
Identity = 42/106 (39.62%), Postives = 53/106 (50.00%), Query Frame = -3


Query: 5   ITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLFPTT 64
           +  +F+NN+     +P NLG+  A YLTF +N FTG IP                LF   
Sbjct: 273 LDVLFINNNNLVQRLPENLGSITALYLTFANNRFTGPIPGSIGDIKSLQEV----LFLNN 332

Query: 65  SLSGCFTNGDGS-SREHLFLLDASKNSLTGPIPFSFSCLTKMQILN 124
            L+GC     G+ +R  +F  D   N LTGPIP+SF CL KM+ LN
Sbjct: 333 KLTGCLPYQIGNLNRATVF--DVELNQLTGPIPYSFGCLKKMEQLN 372

Query: 125  184
           
Sbjct: 393  372

Query: 185  244
           
Sbjct: 453  372

Query: 245  304
           
Sbjct: 513  372

Query: 305  320
           
Sbjct: 573  372

[Close]

BLAST of WMU56073 vs. TAIR10
Match: AT1G49750.1 (AT1G49750.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-12
Identity = 41/106 (38.68%), Postives = 52/106 (49.06%), Query Frame = -3


Query: 5   ITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLFPTT 64
           +  +F+NN+     +P NLG+  A YLTF +N FTG IP                LF   
Sbjct: 271 LDVLFINNNNLVQKLPLNLGSITALYLTFANNRFTGPIPESIGNIKYLQEV----LFLNN 330

Query: 65  SLSGCFTNGDGS-SREHLFLLDASKNSLTGPIPFSFSCLTKMQILN 124
            L+GC     G+ +R  +F  D   N LTGPIP+SF CL  M+ LN
Sbjct: 331 KLTGCLPYQIGNLTRATVF--DVGFNQLTGPIPYSFGCLETMEQLN 370

Query: 125  184
           
Sbjct: 391  370

Query: 185  244
           
Sbjct: 451  370

Query: 245  304
           
Sbjct: 511  370

Query: 305  320
           
Sbjct: 571  370

[Close]

BLAST of WMU56073 vs. TAIR10
Match: AT4G29240.1 (AT4G29240.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-11
Identity = 38/105 (36.19%), Postives = 52/105 (49.52%), Query Frame = -3


Query: 5   ITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLFPTT 64
           + AI LNN++F   IP NLGN+PA  +   +N F+GEIP                L    
Sbjct: 211 LDAILLNNNQFVGEIPRNLGNSPASVINLANNRFSGEIPTSFGLTGSRVKEV---LLLNN 270

Query: 65  SLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQILN 124
            L+GC     G   E + + D S N+L G +P + SCL+ ++ILN
Sbjct: 271 QLTGCIPESVGMFSE-IEVFDVSYNALMGHVPDTISCLSAIEILN 311

Query: 125  184
           
Sbjct: 331  311

Query: 185  244
           
Sbjct: 391  311

Query: 245  304
           
Sbjct: 451  311

Query: 305  320
           
Sbjct: 511  311

[Close]

BLAST of WMU56073 vs. TAIR10
Match: AT4G33970.1 (AT4G33970.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = -3


Query: 14  ITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLFPTT 73
           + AIFLN+++F   IP +LG +PA  +TF +N+FTG IP                +F   
Sbjct: 231 LDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEI----VFMDN 290

Query: 74  SLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQ 133
            L GCF +  G    ++ + DASKNS  G +P SF  LT ++
Sbjct: 291 DLGGCFPSEIG-KLSNVTVFDASKNSFIGRLPTSFVGLTSVE 327

Query: 134  193
           
Sbjct: 351  327

Query: 194  253
           
Sbjct: 411  327

Query: 254  313
           
Sbjct: 471  327

Query: 314  320
           
Sbjct: 531  327

[Close]

BLAST of WMU56073 vs. TAIR10
Match: AT2G15880.1 (AT2G15880.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-10
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = -3


Query: 14  ITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLFPTT 73
           + AIFLNN++F   IP +LG + A  +TF  N+F+G IP                +F   
Sbjct: 205 LDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKNLNEI----IFKDN 264

Query: 74  SLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQ 133
           SL GCF +  G    ++ + DAS NS TG +P SF  LT M+
Sbjct: 265 SLGGCFPSEIG-KLANVNVFDASMNSFTGVLPPSFVGLTSME 301

Query: 134  193
           
Sbjct: 325  301

Query: 194  253
           
Sbjct: 385  301

Query: 254  313
           
Sbjct: 445  301

Query: 314  320
           
Sbjct: 505  301

[Close]

BLAST of WMU56073 vs. Swiss-Prot
Match: PLRX4_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=PEX4 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-09
Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = -3


Query: 14  ITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLFPTT 73
           + AIFLN+++F   IP +LG +PA  +TF +N+FTG IP                +F   
Sbjct: 231 LDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEI----VFMDN 290

Query: 74  SLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQ 133
            L GCF +  G    ++ + DASKNS  G +P SF  LT ++
Sbjct: 291 DLGGCFPSEIG-KLSNVTVFDASKNSFIGRLPTSFVGLTSVE 327

Query: 134  193
           
Sbjct: 351  327

Query: 194  253
           
Sbjct: 411  327

Query: 254  313
           
Sbjct: 471  327

Query: 314  320
           
Sbjct: 531  327

[Close]

BLAST of WMU56073 vs. Swiss-Prot
Match: PLRX3_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=PEX3 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-09
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = -3


Query: 14  ITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLFPTT 73
           + AIFLNN++F   IP +LG + A  +TF  N+F+G IP                +F   
Sbjct: 205 LDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKNLNEI----IFKDN 264

Query: 74  SLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQ 133
           SL GCF +  G    ++ + DAS NS TG +P SF  LT M+
Sbjct: 265 SLGGCFPSEIG-KLANVNVFDASMNSFTGVLPPSFVGLTSME 301

Query: 134  193
           
Sbjct: 325  301

Query: 194  253
           
Sbjct: 385  301

Query: 254  313
           
Sbjct: 445  301

Query: 314  320
           
Sbjct: 505  301

[Close]

BLAST of WMU56073 vs. Swiss-Prot
Match: PLRX2_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-08
Identity = 35/105 (33.33%), Postives = 53/105 (50.48%), Query Frame = -3


Query: 5   ITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLFPTT 64
           + AIFLNN++F   IP  +G + A  +TF +N+F+G IP                +F   
Sbjct: 204 LDAIFLNNNRFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNMKNLNEI----VFTGN 263

Query: 65  SLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQILN 124
           +L+GCF N  G    ++ + DASKN   G +P + S L  ++ L+
Sbjct: 264 NLTGCFPNEIG-LLNNVTVFDASKNGFVGSLPSTLSGLASVEQLD 303

Query: 125  184
           
Sbjct: 324  303

Query: 185  244
           
Sbjct: 384  303

Query: 245  304
           
Sbjct: 444  303

Query: 305  320
           
Sbjct: 504  303

[Close]

BLAST of WMU56073 vs. Swiss-Prot
Match: PLRX1_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-08
Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = -3


Query: 2   ITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLFPTT 61
           + AIFLNN++F   IP  +G + A  +TF  N+F+G IP                +F   
Sbjct: 217 LDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQMKNLNEI----VFIGN 276

Query: 62  SLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQILNF 121
           +LSGC  N  G S  ++ + DAS N   G +P + S L  ++ ++F
Sbjct: 277 NLSGCLPNEIG-SLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDF 317

Query: 122  181
           
Sbjct: 337  317

Query: 182  241
           
Sbjct: 397  317

Query: 242  301
           
Sbjct: 457  317

Query: 302  320
           
Sbjct: 517  317

[Close]

BLAST of WMU56073 vs. Swiss-Prot
Match: LRX7_ARATH (Leucine-rich repeat extensin-like protein 7 OS=Arabidopsis thaliana GN=LRX7 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.7e-07
Identity = 32/105 (30.48%), Postives = 47/105 (44.76%), Query Frame = -3


Query: 5   ITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLFPTT 64
           + A+FLN+++F   IP N+GN+P   L   SN F G IP                +    
Sbjct: 196 LDALFLNSNRFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKTLNEI---ILMDN 255

Query: 65  SLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQILN 124
            L  C  N D    +++ +LD S N L G +P S   +  +++LN
Sbjct: 256 GLQSCIPN-DMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLN 296

Query: 125  184
           
Sbjct: 316  296

Query: 185  244
           
Sbjct: 376  296

Query: 245  304
           
Sbjct: 436  296

Query: 305  320
           
Sbjct: 496  296

[Close]

BLAST of WMU56073 vs. NCBI nr
Match: gi|778730207|ref|XP_011659726.1| (PREDICTED: uncharacterized protein At4g06744-like [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 70/109 (64.22%), Postives = 75/109 (68.81%), Query Frame = -3


Query: 2   MDIITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLF 61
           MDIITAIFLN++KFN+ IPANLGNTPARYLTFTSNEFTG IP                LF
Sbjct: 285 MDIITAIFLNDNKFNNCIPANLGNTPARYLTFTSNEFTGPIPKSIGIGKTKTNLIEV-LF 344

Query: 62  PTTSLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQILNF 121
               LSGC     G   E+  L DASKNSLTGPIPFSFSCL KMQ+LNF
Sbjct: 345 SDNKLSGCLPMEIG-LLENTILFDASKNSLTGPIPFSFSCLAKMQVLNF 391

Query: 122  181
           
Sbjct: 405  391

Query: 182  241
           
Sbjct: 465  391

Query: 242  301
           
Sbjct: 525  391

Query: 302  329
           
Sbjct: 585  391

[Close]

BLAST of WMU56073 vs. NCBI nr
Match: gi|700188673|gb|KGN43906.1| (hypothetical protein Csa_7G073420 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 70/109 (64.22%), Postives = 75/109 (68.81%), Query Frame = -3


Query: 2   MDIITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLF 61
           MDIITAIFLN++KFN+ IPANLGNTPARYLTFTSNEFTG IP                LF
Sbjct: 263 MDIITAIFLNDNKFNNCIPANLGNTPARYLTFTSNEFTGPIPKSIGIGKTKTNLIEV-LF 322

Query: 62  PTTSLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQILNF 121
               LSGC     G   E+  L DASKNSLTGPIPFSFSCL KMQ+LNF
Sbjct: 323 SDNKLSGCLPMEIG-LLENTILFDASKNSLTGPIPFSFSCLAKMQVLNF 369

Query: 122  181
           
Sbjct: 383  369

Query: 182  241
           
Sbjct: 443  369

Query: 242  301
           
Sbjct: 503  369

Query: 302  329
           
Sbjct: 563  369

[Close]

BLAST of WMU56073 vs. NCBI nr
Match: gi|659109958|ref|XP_008454972.1| (PREDICTED: uncharacterized protein At4g06744-like [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 70/109 (64.22%), Postives = 75/109 (68.81%), Query Frame = -3


Query: 2   MDIITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLF 61
           MDIITAIFLNN+KFN +IPANLGNTPARYLTFTSNEFTG IP                LF
Sbjct: 210 MDIITAIFLNNNKFNQDIPANLGNTPARYLTFTSNEFTGPIPKSIGIGKTKKNLIEV-LF 269

Query: 62  PTTSLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQILNF 121
               LSGC     G   E+  L +ASKNSLTGPIP+SF CLTKMQILNF
Sbjct: 270 SDNKLSGCLPMEIG-LLENTVLFNASKNSLTGPIPYSFCCLTKMQILNF 316

Query: 122  181
           
Sbjct: 330  316

Query: 182  241
           
Sbjct: 390  316

Query: 242  301
           
Sbjct: 450  316

Query: 302  329
           
Sbjct: 510  316

[Close]

BLAST of WMU56073 vs. NCBI nr
Match: gi|659109960|ref|XP_008454973.1| (PREDICTED: uncharacterized protein At4g06744-like [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-26
Identity = 67/109 (61.47%), Postives = 74/109 (67.89%), Query Frame = -3


Query: 2   MDIITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLF 61
           MDI+TAIFLNN+KFNH IPANLGNTPARYLTFTSNEFTG IP                LF
Sbjct: 295 MDILTAIFLNNNKFNHYIPANLGNTPARYLTFTSNEFTGPIPKSIGIGKTKKNLIEV-LF 354

Query: 62  PTTSLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQILNF 121
               LSGC     G   E+  L DAS NSLTGPIP+SF+CL K+Q+LNF
Sbjct: 355 SNNKLSGCLPMEIG-LLENTILFDASNNSLTGPIPYSFACLAKIQLLNF 401

Query: 122  181
           
Sbjct: 415  401

Query: 182  241
           
Sbjct: 475  401

Query: 242  301
           
Sbjct: 535  401

Query: 302  329
           
Sbjct: 595  401

[Close]

BLAST of WMU56073 vs. NCBI nr
Match: gi|778725035|ref|XP_004137106.2| (PREDICTED: uncharacterized protein At4g06744-like [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-25
Identity = 67/109 (61.47%), Postives = 73/109 (66.97%), Query Frame = -3


Query: 2   MDIITAIFLNNDKFNHNIPANLGNTPARYLTFTSNEFTGEIPXXXXXXXXXXXXXXXPLF 61
           MDIITAIFLNN+KFN +IPANLGNTPARYLTFTSNE TG IP                LF
Sbjct: 249 MDIITAIFLNNNKFNQDIPANLGNTPARYLTFTSNELTGPIPKSIGIGKTKKNLIEV-LF 308

Query: 62  PTTSLSGCFTNGDGSSREHLFLLDASKNSLTGPIPFSFSCLTKMQILNF 121
               LSGC     G   E+  L +ASKN LTGPIP+SF CLTKM+ILNF
Sbjct: 309 SDNKLSGCLPMEIG-LLENTVLFNASKNCLTGPIPYSFCCLTKMEILNF 355

Query: 122  181
           
Sbjct: 369  355

Query: 182  241
           
Sbjct: 429  355

Query: 242  301
           
Sbjct: 489  355

Query: 302  329
           
Sbjct: 549  355

The following BLAST results are available for this feature:

BLAST of WMU56073 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19320.1	4.3e-13	39.62	Leucine-rich repeat (LRR) family protein	[more]
AT1G49750.1	2.8e-12	38.68	Leucine-rich repeat (LRR) family protein	[more]
AT4G29240.1	3.1e-11	36.19	Leucine-rich repeat (LRR) family protein	[more]
AT4G33970.1	1.2e-10	37.25	Leucine-rich repeat (LRR) family protein	[more]
AT2G15880.1	1.5e-10	38.24	Leucine-rich repeat (LRR) family protein	[more]

BLAST of WMU56073 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PLRX4_ARATH	2.1e-09	37.25	Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thali...	[more]
PLRX3_ARATH	2.7e-09	38.24	Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thali...	[more]
PLRX2_ARATH	5.1e-08	33.33	Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thali...	[more]
PLRX1_ARATH	5.1e-08	33.02	Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thali...	[more]
LRX7_ARATH	9.7e-07	30.48	Leucine-rich repeat extensin-like protein 7 OS=Arabidopsis thaliana GN=LRX7 PE=2...	[more]

BLAST of WMU56073 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730207\|ref\|XP_011659726.1\|	1.9e-26	64.22	PREDICTED: uncharacterized protein At4g06744-like [Cucumis sativus]	[more]
gi\|700188673\|gb\|KGN43906.1\|	1.9e-26	64.22	hypothetical protein Csa_7G073420 [Cucumis sativus]	[more]
gi\|659109958\|ref\|XP_008454972.1\|	1.9e-26	64.22	PREDICTED: uncharacterized protein At4g06744-like [Cucumis melo]	[more]
gi\|659109960\|ref\|XP_008454973.1\|	5.5e-26	61.47	PREDICTED: uncharacterized protein At4g06744-like [Cucumis melo]	[more]
gi\|778725035\|ref\|XP_004137106.2\|	7.9e-25	61.47	PREDICTED: uncharacterized protein At4g06744-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla016035	Cla016035	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0126595	S1_0126595	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27000	FAMILY NOT NAMED	coord: 84..109 score: 3.6E-19coord: 8..53 score: 3.6
None	No IPR available	PANTHER	PTHR27000:SF60	SUBFAMILY NOT NAMED	coord: 84..109 score: 3.6E-19coord: 8..53 score: 3.6