WMU53465 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU53465
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr1 : 14669079 .. 14674171 (-)
Sequence length	418

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TACCCTCACTTCCTGAGGACCTGGCGCCTGAAGAAGACGGTTCTGCACCCGGGGTGGAGTTGTCTCTCCGGTCTAATTGCTGCTTCAAGGAGTATTTAGCAAGATATTCAGCTCTTGAAGCTTCCATCACCATCTGCTCAATCTCTTTTTCAGTAACCTCAAGATCTGAGAAATACCGTCCTTGAGCAAGAAGAGCGTTATCAAGCTGTTGATCTTGCTGTGCTTTTAAAGCAGCCTTCACCTTATCCTTGTCAACATTTTGCCCCCTCGAAGACTGCTGAATCCAAGCCCTGCACCAATTGTTAAGCGACGTGGATCAACAAGAGAGTTGTAATGATTTCCATGATGATAGCTCAACCGAATGGGAGCAGGTCAGTAGCATAGTTCCATGAAGTATTAATAGGTTCTGTGCCATAGG

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

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BLAST of WMU53465 vs. TAIR10
Match: AT2G27350.5 (AT2G27350.5 OTU-like cysteine protease family protein)

HSP 1 Score: 70.5 bits (171), Expect = 9.4e-13
Identity = 31/34 (91.18%), Postives = 30/34 (88.24%), Query Frame = -2


Query: 265 PIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRG 324
           PIRLSYHHGNHYNSLVDP RLT+GAGLGFSSL G
Sbjct: 322 PIRLSYHHGNHYNSLVDPHRLTVGAGLGFSSLSG 355

Query: 325  367
           
Sbjct: 382  355

HSP 2 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = -1


Query: 53  GRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNST 112
           GR++SDLE+TEKEIE+ VMEASRAEYL ++S K ++  +++ST
Sbjct: 383 GRFYSDLELTEKEIERSVMEASRAEYLMEWS-KPRIGPKESST 424

Query: 113  172
           
Sbjct: 443  424

Query: 173  182
           
Sbjct: 503  424

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BLAST of WMU53465 vs. NCBI nr
Match: gi|778659493|ref|XP_011654529.1| (PREDICTED: OTU domain-containing protein 5-B [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 8.0e-14
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = -1


Query: 53  GRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNST 112
           GRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNST
Sbjct: 414 GRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNST 456

Query: 113  172
           
Sbjct: 474  456

Query: 173  182
           
Sbjct: 534  456

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BLAST of WMU53465 vs. NCBI nr
Match: gi|659071632|ref|XP_008461136.1| (PREDICTED: OTU domain-containing protein 5-B [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 8.0e-14
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = -1


Query: 53  GRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNST 112
           GRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNST
Sbjct: 414 GRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNST 456

Query: 113  172
           
Sbjct: 474  456

Query: 173  182
           
Sbjct: 534  456

[Close]

BLAST of WMU53465 vs. NCBI nr
Match: gi|147860016|emb|CAN81048.1| (hypothetical protein VITISV_021902 [Vitis vinifera])

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -2


Query: 265 PIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRG 324
           PIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRG
Sbjct: 52  PIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRG 85

Query: 325  367
           
Sbjct: 112  85

[Close]

BLAST of WMU53465 vs. NCBI nr
Match: gi|955350974|ref|XP_014619606.1| (PREDICTED: OTU domain-containing protein 5-like isoform X2 [Glycine max])

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -2


Query: 265 PIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRG 324
           PIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRG
Sbjct: 337 PIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRG 370

Query: 325  367
           
Sbjct: 397  370

[Close]

BLAST of WMU53465 vs. NCBI nr
Match: gi|296084879|emb|CBI28288.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -2


Query: 265 PIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRG 324
           PIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRG
Sbjct: 315 PIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRG 348

Query: 325  367
           
Sbjct: 375  348

The following BLAST results are available for this feature:

BLAST of WMU53465 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27350.5	9.4e-13	91.18	OTU-like cysteine protease family protein	[more]

BLAST of WMU53465 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659493\|ref\|XP_011654529.1\|	8.0e-14	100.00	PREDICTED: OTU domain-containing protein 5-B [Cucumis sativus]	[more]
gi\|659071632\|ref\|XP_008461136.1\|	8.0e-14	100.00	PREDICTED: OTU domain-containing protein 5-B [Cucumis melo]	[more]
gi\|147860016\|emb\|CAN81048.1\|	3.7e-11	100.00	hypothetical protein VITISV_021902 [Vitis vinifera]	[more]
gi\|955350974\|ref\|XP_014619606.1\|	3.7e-11	100.00	PREDICTED: OTU domain-containing protein 5-like isoform X2 [Glycine max]	[more]
gi\|296084879\|emb\|CBI28288.3\|	3.7e-11	100.00	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Molecular Function**
Term	Definition
GO:0004843	thiol-dependent ubiquitin-specific protease activity

Vocabulary: **Biological Process**
Term	Definition
GO:0016579	protein deubiquitination

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
molecular_function	GO:0004843	thiol-dependent ubiquitin-specific protease activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla000959	Cla000959	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0086692	S1_0086692	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12419	OTU DOMAIN CONTAINING PROTEIN	coord: 4..139 score: 1.8