WMU53279 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU53279
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	F-box only 6-like protein
Location	Chr6 : 1064195 .. 1064694 (+)
Sequence length	503

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTCTTAAAGAGTTGCCAGCTAGATCAGTTGAAGTGTGGTCTCGTGTTGCGGTAGGGATGACTCTAAAATGGGAGTTCGACCAGTGGGGGCTACAATATCTTATGTCTGGGCTGTGATGGAGAGTATGAAGAATTTAACGATTCGGTTAAAATTCATGGACTCACCCGGGTAGCATGCCTTCTAGTATTAAGCTTCCATTATCCCTGAATTTCCGCTCACAAGCTGTCTCCATTGACAGCACACTGTACTTCATGCGTTCAGATCCTGAAGGGATTGTGTCTTACAACATGGTCAGTGGGGTTTGGAAGCAGTTTATAGTTCCCACCCCGCTACATCTGACGGACCATACGCTTGCGGAGTATGGGGGCCGGATCATGCTTGTGGGGTTGTTGACAAAAAACGCAGCCACGTGCGAGTGCATATGGGAGCTGCAGAAGATGACTCTCTTATGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCCTTGGAGTTTTATGGAAA

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

[Close]

BLAST of WMU53279 vs. TAIR10
Match: AT1G27340.1 (AT1G27340.1 Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-53
Identity = 106/161 (65.84%), Postives = 119/161 (73.91%), Query Frame = 3


Query: 6   KELPARSVEVWSRVAVGMTLKWEFDQWGLQYLMSGL*WRV*RI*RFG*NSWTHPGSMPSS 65
           +ELPARS +VWSRVAVGMTL       G + L  G             N WT  G++PS+
Sbjct: 236 RELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCEGEYEVYDSLS-NVWTKRGTIPSN 295

Query: 66  IKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMVSGVWKQFIVPTPLHLTDHTLAEYG 125
           IKLP+ LNF+SQ V+I STLYFM +DPEGI+SY+MVSG WKQFI+P P  L+DHTLA  G
Sbjct: 296 IKLPVLLNFKSQPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIPGPPDLSDHTLAACG 355

Query: 126 GRIMLVGLLTKNAATCECIWELQKMTLLWKEVDRMPNIWCL 185
            R+MLVGLLTKNAATC CIWELQKMTLLWKEVDRMPNIWCL
Sbjct: 356 ERLMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL 395

Query: 186  245
           
Sbjct: 416  395

Query: 246  305
           
Sbjct: 476  395

Query: 306  365
           
Sbjct: 536  395

Query: 366  425
           
Sbjct: 596  395

Query: 426  485
           
Sbjct: 656  395

Query: 486  489
           
Sbjct: 716  395

[Close]

BLAST of WMU53279 vs. Swiss-Prot
Match: FBX6_ARATH (F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-52
Identity = 106/161 (65.84%), Postives = 119/161 (73.91%), Query Frame = 3


Query: 6   KELPARSVEVWSRVAVGMTLKWEFDQWGLQYLMSGL*WRV*RI*RFG*NSWTHPGSMPSS 65
           +ELPARS +VWSRVAVGMTL       G + L  G             N WT  G++PS+
Sbjct: 236 RELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCEGEYEVYDSLS-NVWTKRGTIPSN 295

Query: 66  IKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMVSGVWKQFIVPTPLHLTDHTLAEYG 125
           IKLP+ LNF+SQ V+I STLYFM +DPEGI+SY+MVSG WKQFI+P P  L+DHTLA  G
Sbjct: 296 IKLPVLLNFKSQPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIPGPPDLSDHTLAACG 355

Query: 126 GRIMLVGLLTKNAATCECIWELQKMTLLWKEVDRMPNIWCL 185
            R+MLVGLLTKNAATC CIWELQKMTLLWKEVDRMPNIWCL
Sbjct: 356 ERLMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL 395

Query: 186  245
           
Sbjct: 416  395

Query: 246  305
           
Sbjct: 476  395

Query: 306  365
           
Sbjct: 536  395

Query: 366  425
           
Sbjct: 596  395

Query: 426  485
           
Sbjct: 656  395

Query: 486  489
           
Sbjct: 716  395

[Close]

BLAST of WMU53279 vs. NCBI nr
Match: gi|449445668|ref|XP_004140594.1| (PREDICTED: F-box only protein 6 isoform X1 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.9e-70
Identity = 135/162 (83.33%), Postives = 137/162 (84.57%), Query Frame = 3


Query: 3   LKELPARSVEVWSRVAVGMTLKWEFDQWGLQYLMSGL*WRV*RI*RFG*NSWTHPGSMPS 62
           LKELPARSVEVWSRVAVGMTL      WG   L  G       I     NSW HPGSMPS
Sbjct: 234 LKELPARSVEVWSRVAVGMTLNGSSTSWGYNILCLGCDGEY-EIYDSVKNSWIHPGSMPS 293

Query: 63  SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMVSGVWKQFIVPTPLHLTDHTLAEY 122
           SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVS+NMV+GVWKQFIVPTPLHLTDHTLAEY
Sbjct: 294 SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSFNMVTGVWKQFIVPTPLHLTDHTLAEY 353

Query: 123 GGRIMLVGLLTKNAATCECIWELQKMTLLWKEVDRMPNIWCL 182
           GGRIMLVGLLTKNAATC CIWELQKMTLLWKEVDRMPNIWCL
Sbjct: 354 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL 394

Query: 183  242
           
Sbjct: 414  394

Query: 243  302
           
Sbjct: 474  394

Query: 303  362
           
Sbjct: 534  394

Query: 363  422
           
Sbjct: 594  394

Query: 423  482
           
Sbjct: 654  394

Query: 483  489
           
Sbjct: 714  394

[Close]

BLAST of WMU53279 vs. NCBI nr
Match: gi|778711509|ref|XP_011656746.1| (PREDICTED: F-box only protein 6 isoform X3 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.9e-70
Identity = 135/162 (83.33%), Postives = 137/162 (84.57%), Query Frame = 3


Query: 3   LKELPARSVEVWSRVAVGMTLKWEFDQWGLQYLMSGL*WRV*RI*RFG*NSWTHPGSMPS 62
           LKELPARSVEVWSRVAVGMTL      WG   L  G       I     NSW HPGSMPS
Sbjct: 155 LKELPARSVEVWSRVAVGMTLNGSSTSWGYNILCLGCDGEY-EIYDSVKNSWIHPGSMPS 214

Query: 63  SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMVSGVWKQFIVPTPLHLTDHTLAEY 122
           SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVS+NMV+GVWKQFIVPTPLHLTDHTLAEY
Sbjct: 215 SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSFNMVTGVWKQFIVPTPLHLTDHTLAEY 274

Query: 123 GGRIMLVGLLTKNAATCECIWELQKMTLLWKEVDRMPNIWCL 182
           GGRIMLVGLLTKNAATC CIWELQKMTLLWKEVDRMPNIWCL
Sbjct: 275 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL 315

Query: 183  242
           
Sbjct: 335  315

Query: 243  302
           
Sbjct: 395  315

Query: 303  362
           
Sbjct: 455  315

Query: 363  422
           
Sbjct: 515  315

Query: 423  482
           
Sbjct: 575  315

Query: 483  489
           
Sbjct: 635  315

[Close]

BLAST of WMU53279 vs. NCBI nr
Match: gi|778711506|ref|XP_011656745.1| (PREDICTED: F-box only protein 6 isoform X2 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.9e-70
Identity = 135/162 (83.33%), Postives = 137/162 (84.57%), Query Frame = 3


Query: 3   LKELPARSVEVWSRVAVGMTLKWEFDQWGLQYLMSGL*WRV*RI*RFG*NSWTHPGSMPS 62
           LKELPARSVEVWSRVAVGMTL      WG   L  G       I     NSW HPGSMPS
Sbjct: 184 LKELPARSVEVWSRVAVGMTLNGSSTSWGYNILCLGCDGEY-EIYDSVKNSWIHPGSMPS 243

Query: 63  SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMVSGVWKQFIVPTPLHLTDHTLAEY 122
           SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVS+NMV+GVWKQFIVPTPLHLTDHTLAEY
Sbjct: 244 SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSFNMVTGVWKQFIVPTPLHLTDHTLAEY 303

Query: 123 GGRIMLVGLLTKNAATCECIWELQKMTLLWKEVDRMPNIWCL 182
           GGRIMLVGLLTKNAATC CIWELQKMTLLWKEVDRMPNIWCL
Sbjct: 304 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL 344

Query: 183  242
           
Sbjct: 364  344

Query: 243  302
           
Sbjct: 424  344

Query: 303  362
           
Sbjct: 484  344

Query: 363  422
           
Sbjct: 544  344

Query: 423  482
           
Sbjct: 604  344

Query: 483  489
           
Sbjct: 664  344

[Close]

BLAST of WMU53279 vs. NCBI nr
Match: gi|659120086|ref|XP_008460006.1| (PREDICTED: F-box only protein 6 isoform X2 [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 1.4e-68
Identity = 134/162 (82.72%), Postives = 135/162 (83.33%), Query Frame = 3


Query: 3   LKELPARSVEVWSRVAVGMTLKWEFDQWGLQYLMSGL*WRV*RI*RFG*NSWTHPGSMPS 62
           LK LPARSVEVWSRVAVGMTL       G   L  G       I     NSW HPGSMPS
Sbjct: 184 LKVLPARSVEVWSRVAVGMTLNGSSTNGGYNILCLGCDGEY-EIYDSVKNSWIHPGSMPS 243

Query: 63  SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMVSGVWKQFIVPTPLHLTDHTLAEY 122
           SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMV+GVWKQFIVPTPLHLTDHTLAEY
Sbjct: 244 SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMVTGVWKQFIVPTPLHLTDHTLAEY 303

Query: 123 GGRIMLVGLLTKNAATCECIWELQKMTLLWKEVDRMPNIWCL 182
           GGRIMLVGLLTKNAATC CIWELQKMTLLWKEVDRMPNIWCL
Sbjct: 304 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL 344

Query: 183  242
           
Sbjct: 364  344

Query: 243  302
           
Sbjct: 424  344

Query: 303  362
           
Sbjct: 484  344

Query: 363  422
           
Sbjct: 544  344

Query: 423  482
           
Sbjct: 604  344

Query: 483  489
           
Sbjct: 664  344

[Close]

BLAST of WMU53279 vs. NCBI nr
Match: gi|659120088|ref|XP_008460007.1| (PREDICTED: F-box only protein 6 isoform X3 [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 1.4e-68
Identity = 134/162 (82.72%), Postives = 135/162 (83.33%), Query Frame = 3


Query: 3   LKELPARSVEVWSRVAVGMTLKWEFDQWGLQYLMSGL*WRV*RI*RFG*NSWTHPGSMPS 62
           LK LPARSVEVWSRVAVGMTL       G   L  G       I     NSW HPGSMPS
Sbjct: 155 LKVLPARSVEVWSRVAVGMTLNGSSTNGGYNILCLGCDGEY-EIYDSVKNSWIHPGSMPS 214

Query: 63  SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMVSGVWKQFIVPTPLHLTDHTLAEY 122
           SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMV+GVWKQFIVPTPLHLTDHTLAEY
Sbjct: 215 SIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMVTGVWKQFIVPTPLHLTDHTLAEY 274

Query: 123 GGRIMLVGLLTKNAATCECIWELQKMTLLWKEVDRMPNIWCL 182
           GGRIMLVGLLTKNAATC CIWELQKMTLLWKEVDRMPNIWCL
Sbjct: 275 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL 315

Query: 183  242
           
Sbjct: 335  315

Query: 243  302
           
Sbjct: 395  315

Query: 303  362
           
Sbjct: 455  315

Query: 363  422
           
Sbjct: 515  315

Query: 423  482
           
Sbjct: 575  315

Query: 483  489
           
Sbjct: 635  315

The following BLAST results are available for this feature:

BLAST of WMU53279 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27340.1	1.0e-53	65.84	Galactose oxidase/kelch repeat superfamily protein	[more]

BLAST of WMU53279 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FBX6_ARATH	1.8e-52	65.84	F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1	[more]

BLAST of WMU53279 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445668\|ref\|XP_004140594.1\|	1.9e-70	83.33	PREDICTED: F-box only protein 6 isoform X1 [Cucumis sativus]	[more]
gi\|778711509\|ref\|XP_011656746.1\|	1.9e-70	83.33	PREDICTED: F-box only protein 6 isoform X3 [Cucumis sativus]	[more]
gi\|778711506\|ref\|XP_011656745.1\|	1.9e-70	83.33	PREDICTED: F-box only protein 6 isoform X2 [Cucumis sativus]	[more]
gi\|659120086\|ref\|XP_008460006.1\|	1.4e-68	82.72	PREDICTED: F-box only protein 6 isoform X2 [Cucumis melo]	[more]
gi\|659120088\|ref\|XP_008460007.1\|	1.4e-68	82.72	PREDICTED: F-box only protein 6 isoform X3 [Cucumis melo]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla007037	Cla007037	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0083589	S1_0083589	EST