WMU53228 (transcribed_cluster) Watermelon (97103) v1

NameWMU53228
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionHomeobox-leucine zipper protein ATHB-16
LocationChr2 : 14794224 .. 14794348 (-)
Sequence length127
The following sequences are available for this feature:

transcribed_cluster sequence

AGTAACCATGTTTACGGCACAGAATTCCAGTCTATGCTGGATGGATTTGAGGAAGAAGGGTGCGTTGAGGAATCGGGGCGATGTTTCTAGAGAAGAAAAGGACGACTTAGTGTGGAGCAAGTGAAGG
BLAST of WMU53228 vs. NCBI nr
Match: gi|658006783|ref|XP_008338560.1| (PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Malus domestica])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-06
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1

Query: 1   SNHVYGTEFQSMLDGFEEEGCVEESGRCF*RRKGRLSVEQVK 60
           +NHVY  EFQSMLDG +EEGCVEE+G     +K RLSVEQVK
Sbjct: 27  NNHVYSREFQSMLDGLDEEGCVEEAGHVS-EKKRRLSVEQVK 67

Query: 61  120
           
Sbjct: 87  67

Query: 121 127
           
Sbjct: 147 67

BLAST of WMU53228 vs. NCBI nr
Match: gi|802673601|ref|XP_012081624.1| (PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-06
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1

Query: 1   SNHVYGTEFQSMLDGFEEEGCVEESGRCF*RRKGRLSVEQVK 60
           SNHVYG EFQSMLDG +EE CVEE+G     +K RLSV+QVK
Sbjct: 28  SNHVYGREFQSMLDGLDEEACVEEAGHVS-EKKRRLSVDQVK 68

Query: 61  120
           
Sbjct: 88  68

Query: 121 127
           
Sbjct: 148 68

BLAST of WMU53228 vs. NCBI nr
Match: gi|470103473|ref|XP_004288161.1| (PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-06
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1

Query: 1   SNHVYGTEFQSMLDGFEEEGCVEESGRCF*RRKGRLSVEQVK 60
           +NHVY  +FQSMLDG +EEGCVEESG     +K RLSVEQVK
Sbjct: 28  NNHVYSRDFQSMLDGLDEEGCVEESGHVA-EKKRRLSVEQVK 68

Query: 61  120
           
Sbjct: 88  68

Query: 121 127
           
Sbjct: 148 68

BLAST of WMU53228 vs. NCBI nr
Match: gi|764515533|ref|XP_011465283.1| (PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-06
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1

Query: 1   SNHVYGTEFQSMLDGFEEEGCVEESGRCF*RRKGRLSVEQVK 60
           +NHVY  +FQSMLDG +EEGCVEESG     +K RLSVEQVK
Sbjct: 29  NNHVYSRDFQSMLDGLDEEGCVEESGHVA-EKKRRLSVEQVK 69

Query: 61  120
           
Sbjct: 89  69

Query: 121 127
           
Sbjct: 149 69

BLAST of WMU53228 vs. NCBI nr
Match: gi|590706919|ref|XP_007047858.1| (Alanine--glyoxylate aminotransferase 2 isoform 1 [Theobroma cacao])

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1

Query: 1   SNHVYGTEFQSMLDGFEEEGCVEESGRCF*RRKGRLSVEQVK 60
           +NH+Y  EFQSMLDG +EEGCVEESG     +K RLSV+QVK
Sbjct: 27  NNHIYSREFQSMLDGLDEEGCVEESGHVA-EKKRRLSVDQVK 67

Query: 61  120
           
Sbjct: 87  67

Query: 121 127
           
Sbjct: 147 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|658006783|ref|XP_008338560.1|1.4e-0669.05PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Malus domestica][more]
gi|802673601|ref|XP_012081624.1|1.4e-0669.05PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas][more]
gi|470103473|ref|XP_004288161.1|1.4e-0669.05PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2 [Fragaria vesc... [more]
gi|764515533|ref|XP_011465283.1|1.4e-0669.05PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Fragaria vesc... [more]
gi|590706919|ref|XP_007047858.1|1.9e-0666.67Alanine--glyoxylate aminotransferase 2 isoform 1 [Theobroma cacao][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla003103Cla003103gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0082610S1_0082610EST