WMU52873 (transcribed_cluster) Watermelon (97103) v1

NameWMU52873
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 283088 .. 283254 (+)
Sequence length170
The following sequences are available for this feature:

transcribed_cluster sequence

CAAGCGCCGCCCCAGGTTTCGCATTACGAATCTAACCCCTCCAAACAACGATGGCAATGGACGAGATCCCCTTCGAAAACGGGTCGTCCGTTAATTCACCGACCTTGGCATGAGAGACCGTACCTGGTTTCAATTGAACTGACTTCTCGTTCCATTGGTTGCTTTCTGGG
BLAST of WMU52873 vs. NCBI nr
Match: gi|778676625|ref|XP_011650623.1| (PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-09
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = -2

Query: 2   SNQWNEKSVQLKPGTVSHAKVGELTDDPFSKGISSIAIVVWRG*IR-NAKPGAAL 61
           +N WNEKS QLKPGT SH+KVGELTDDPF +G   +  +   G +R NAKPGAAL
Sbjct: 99  NNPWNEKSAQLKPGTASHSKVGELTDDPFRRGSRPLPSLF--GAVRSNAKPGAAL 151

Query: 62  121
           
Sbjct: 159 151

Query: 122 164
           
Sbjct: 219 151

BLAST of WMU52873 vs. NCBI nr
Match: gi|659074757|ref|XP_008437780.1| (PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 9.1e-09
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = -2

Query: 2   PESNQWNEKSVQLKPGTVSHAKVGELTDDPFSKGISSIAIVVWRG*IR-NAKPGAAL 61
           P +N WNEKS Q KPG VSH+K+GELTDDPF +G   +  +   G +R NAKPGAAL
Sbjct: 104 PRNNPWNEKSAQSKPGKVSHSKIGELTDDPFRRGSRPLPSLF--GAVRSNAKPGAAL 158

Query: 62  121
           
Sbjct: 164 158

Query: 122 170
           
Sbjct: 224 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|778676625|ref|XP_011650623.1|4.1e-0963.64PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Cucumis sativu... [more]
gi|659074757|ref|XP_008437780.1|9.1e-0959.65PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021086Cla021086gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0076635S1_0076635EST