WMU51088 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU51088
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 4287952 .. 4288201 (+)
Sequence length	251

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCATGCTCGGCCTCTTCGTTGGGTCCTTCTGCAAGCAACTAACAGCCACATTCATCACATCCATCAAACTCTCCATTGGGCACGATTGCTCGAAAAGAGCTTCATCAATCCAACTCCTCAATCTTTTCCAACTTCTCCTTCTCCTTCCCCTACCAAAAACCCACTACTGGCGCTCATCCATAGAACCCCTCCTTCGTCGTCAACAGCCTCCTTCCCAGAGATCAGCTCGAGCAGAACAACTCCAAACGAGA

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

[Close]

BLAST of WMU51088 vs. NCBI nr
Match: gi|778678340|ref|XP_011650952.1| (PREDICTED: lysM domain receptor-like kinase 4 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -2


Query: 2   IDEALFEQSCPMESLMDVMNVAVSCLQKDPTKRPSM 61
           IDEALFEQSCPMESLMD MNVAVSCLQKDPTKRPSM
Sbjct: 566 IDEALFEQSCPMESLMDAMNVAVSCLQKDPTKRPSM 601

Query: 62   110
           
Sbjct: 626  601

[Close]

BLAST of WMU51088 vs. NCBI nr
Match: gi|659076279|ref|XP_008438594.1| (PREDICTED: lysM domain receptor-like kinase 4 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -2


Query: 2   IDEALFEQSCPMESLMDVMNVAVSCLQKDPTKRPSM 61
           IDEALFEQSCPMESLMD MNVAVSCLQKDPTKRPSM
Sbjct: 569 IDEALFEQSCPMESLMDAMNVAVSCLQKDPTKRPSM 604

Query: 62   110
           
Sbjct: 629  604

The following BLAST results are available for this feature:

BLAST of WMU51088 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778678340\|ref\|XP_011650952.1\|	1.1e-10	97.22	PREDICTED: lysM domain receptor-like kinase 4 [Cucumis sativus]	[more]
gi\|659076279\|ref\|XP_008438594.1\|	1.1e-10	97.22	PREDICTED: lysM domain receptor-like kinase 4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR011009	Kinase-like_dom_sf

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021574	Cla021574	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0046832	S1_0046832	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011009	Protein kinase-like domain	unknown	SSF56112	Protein kinase-like (PK-like)	coord: 2..84 score: 1.6
None	No IPR available	GENE3D	G3DSA:1.10.510.10		coord: 2..84 score: 2.
None	No IPR available	PANTHER	PTHR27001	FAMILY NOT NAMED	coord: 2..84 score: 2.6
None	No IPR available	PANTHER	PTHR27001:SF241	SUBFAMILY NOT NAMED	coord: 2..84 score: 2.6