WMU50836 (transcribed_cluster) Watermelon (97103) v1

NameWMU50836
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionEthylene-responsive transcription factor ERF003
LocationChr8 : 22821825 .. 22822120 (+)
Sequence length296
The following sequences are available for this feature:

transcribed_cluster sequence

ATTAAGCCCTTCACGGCGGAGGCAAAGACCCAAACGGAAACCGCGCATCAGCCTTTTGTGGCTCTGGAAGAGGATCATATCGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTATTGTACCACCGTCTCCGGCGTTTTGAAATTAATTAAACGAAAGCCCATTTTGGTCGAACTTTTGGGATTACATAAAATATTATTAGTAGTGTTTTCTTGGATTTAGTTCTACTGGATGATTAACAATTAGGCTATCTGTATAATCCGATTATCTTAATGTACT
BLAST of WMU50836 vs. TAIR10
Match: AT5G25190.1 (AT5G25190.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 7.6e-09
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1

Query: 13  TAEAKTQTETAH--QPFVALEEDHIEQMIEELIHYGSVELCSIVP 72
           T E K +   A+  Q F  LEEDHIEQMIEEL+HYGS+ELCS++P
Sbjct: 133 TTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLP 177

Query: 73  132
           
Sbjct: 193 177

Query: 133 142
           
Sbjct: 253 177

BLAST of WMU50836 vs. Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1

Query: 13  TAEAKTQTETAH--QPFVALEEDHIEQMIEELIHYGSVELCSIVP 72
           T E K +   A+  Q F  LEEDHIEQMIEEL+HYGS+ELCS++P
Sbjct: 133 TTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLP 177

Query: 73  132
           
Sbjct: 193 177

Query: 133 142
           
Sbjct: 253 177

BLAST of WMU50836 vs. NCBI nr
Match: gi|659088964|ref|XP_008445254.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 1   IKPFTAEAKTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSPAF 60
           IKP T E  TQTE  HQPFVALEEDHIEQMIEELIHYGSVELCS+VPPS AF
Sbjct: 113 IKPLTVEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 164

Query: 61  120
           
Sbjct: 173 164

Query: 121 157
           
Sbjct: 233 164

BLAST of WMU50836 vs. NCBI nr
Match: gi|449442154|ref|XP_004138847.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 1   IKPFTAEAKTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSPAF 60
           IKP T E  TQTE  HQPFVALEEDHIEQMIEELIHYGSVELCS+VPPS AF
Sbjct: 113 IKPLTVEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 164

Query: 61  120
           
Sbjct: 173 164

Query: 121 157
           
Sbjct: 233 164

BLAST of WMU50836 vs. NCBI nr
Match: gi|694312827|ref|XP_009363957.1| (PREDICTED: ethylene-responsive transcription factor ERF003 [Pyrus x bretschneideri])

HSP 1 Score: 65.1 bits (157), Expect = 7.9e-08
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1

Query: 25  KTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSP 84
           + + E++ Q F  LE+DHIEQMIEEL+HYGS+ELCS+VPP P
Sbjct: 137 EVKVESSSQQFKPLEDDHIEQMIEELLHYGSIELCSVVPPQP 178

Query: 85  144
           
Sbjct: 197 178

Query: 145 151
           
Sbjct: 257 178

BLAST of WMU50836 vs. NCBI nr
Match: gi|657945205|ref|XP_008378704.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Malus domestica])

HSP 1 Score: 65.1 bits (157), Expect = 7.9e-08
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1

Query: 25  KTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSP 84
           + + E++ Q F  LE+DHIEQMIEEL+HYGS+ELCS+VPP P
Sbjct: 137 EVKVESSSQQFKPLEDDHIEQMIEELLHYGSIELCSVVPPQP 178

Query: 85  144
           
Sbjct: 197 178

Query: 145 151
           
Sbjct: 257 178

BLAST of WMU50836 vs. NCBI nr
Match: gi|658016807|ref|XP_008343757.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Malus domestica])

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1

Query: 25  KTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSP 84
           + + E++ Q F  LE+DHIEQMIEEL+HYGS+ELCS+VPP P
Sbjct: 137 EVKXESSSQQFKPLEDDHIEQMIEELLHYGSIELCSVVPPXP 178

Query: 85  144
           
Sbjct: 197 178

Query: 145 151
           
Sbjct: 257 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G25190.17.6e-0962.22 Integrase-type DNA-binding superfamily protein[more]
Match NameE-valueIdentityDescription
ERF03_ARATH1.3e-0762.22Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF00... [more]
Match NameE-valueIdentityDescription
gi|659088964|ref|XP_008445254.1|1.2e-1684.62PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo][more]
gi|449442154|ref|XP_004138847.1|1.2e-1684.62PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis sativus... [more]
gi|694312827|ref|XP_009363957.1|7.9e-0864.29PREDICTED: ethylene-responsive transcription factor ERF003 [Pyrus x bretschneide... [more]
gi|657945205|ref|XP_008378704.1|7.9e-0864.29PREDICTED: ethylene-responsive transcription factor ERF003-like [Malus domestica... [more]
gi|658016807|ref|XP_008343757.1|1.3e-0764.29PREDICTED: ethylene-responsive transcription factor ERF003-like [Malus domestica... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla022354Cla022354gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0043014S1_0043014EST