WMU50349 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU50349
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr7 : 28761848 .. 28762077 (+)
Sequence length250
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CATCGAACGCCTCGCCAATCGCAATCAAACTCGCTTAGAGAATTCCATAACCCGCAGATCGGAGTCCGATTCCTCTTCCTCTTCCACTTCGTCGTTTCTAGTCCGCTTTTCCGACTCCAAGCGCGCCATCGAGTCTGAACTCGCCCAATGCCGCCTCACGCTGCCGGAGCCCACTCAGCTCAGATCTCACCTCGATGGGGATATCCACCTCAATCTCCGACCTCGAGAAGTCTGGGTCGTCCCTTCCAAA
Homology
[Close]
BLAST of WMU50349 vs. NCBI nr
Match: gi|449458285|ref|XP_004146878.1| (PREDICTED: tubulin-folding cofactor C [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 37/66 (56.06%), Postives = 38/66 (57.58%), Query Frame = 2 

Query: 2   IERLANRNQTRLENXXXXXXXXXXXXXXXXXXXXXXXXXKRAIESELAQCRLTLPEPTQL 61
           IERLANRNQTRLEN                         KRAIES LAQCRLT P+P QL
Sbjct: 31  IERLANRNQTRLENSITRRSESDSSTSSTSSFLDRFSDSKRAIESALAQCRLTPPDPAQL 90

Query: 62  RSHLDG 121
           RSHLDG
Sbjct: 91  RSHLDG 96

Query: 122  181
           
Sbjct: 151  96

Query: 182  200
           
Sbjct: 211  96

[Close]
BLAST of WMU50349 vs. NCBI nr
Match: gi|659107707|ref|XP_008453815.1| (PREDICTED: tubulin-folding cofactor C [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 36/66 (54.55%), Postives = 37/66 (56.06%), Query Frame = 2 

Query: 2   IERLANRNQTRLENXXXXXXXXXXXXXXXXXXXXXXXXXKRAIESELAQCRLTLPEPTQL 61
           IERLA RNQTRLEN                         KRAIES LAQCRLT P+P QL
Sbjct: 31  IERLAIRNQTRLENSITRRSESDSSTSSTSSFLVRFSDSKRAIESALAQCRLTPPDPAQL 90

Query: 62  RSHLDG 121
           RSHLDG
Sbjct: 91  RSHLDG 96

Query: 122  181
           
Sbjct: 151  96

Query: 182  200
           
Sbjct: 211  96

The following BLAST results are available for this feature:
BLAST of WMU50349 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458285|ref|XP_004146878.1|1.8e-0856.06PREDICTED: tubulin-folding cofactor C [Cucumis sativus][more]
gi|659107707|ref|XP_008453815.1|1.9e-0754.55PREDICTED: tubulin-folding cofactor C [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: Molecular Function
TermDefinition
GO:0015631tubulin binding
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0015631 tubulin binding
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla010675Cla010675gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0034977S1_0034977EST


InterPro
Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
No results