WMU50165 (transcribed_cluster) Watermelon (97103) v1

NameWMU50165
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGibberellin 2-beta-dioxygenase 8
LocationChr10 : 6538448 .. 6538828 (-)
Sequence length389
The following sequences are available for this feature:

transcribed_cluster sequence

AAGCAGTTGAAAGATTTTTCCTTTGCATATTTCTATTGCCCATCTGATGATGTGTTGTTTTGAGAGTTGGTTGAAACCAAGCAATTACAGGCAATTCAGCTACAGAGAGTATAGACAACAAATAGAAAAAGATGTAGAGAAAACAGGCAACAAAGTAGGCCTTTCAAGGTTTTTCTTTGCACAACATGTTGCTGCCTCACTTGGGTCAATAAGTAAAGTCTTTAGTGTCACATTATTAATCAATTATAGCTACTCTACCTAACTATATGAGAAGAAAATAATTAATTAATTATTAAAAACTAAGTAGGAGGTTATTTTGAGTGTGTGTTTTCGTTATCCAATATTTCAACTTATCATTTTCTTTCTATATTATAAACATATTATTGTAT
BLAST of WMU50165 vs. TAIR10
Match: AT1G50960.1 (AT1G50960.1 gibberellin 2-oxidase 7)

HSP 1 Score: 50.4 bits (119), Expect = 9.3e-07
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 2

Query: 77  PSNYRQFSYREYRQQIEKDVEKTGNKVGLSRF 136
           P  YR+FS+REY++Q E DV++TG+KVGLSRF
Sbjct: 303 PKKYRRFSFREYKEQSEHDVKETGDKVGLSRF 334

Query: 137 173
           
Sbjct: 363 334

BLAST of WMU50165 vs. NCBI nr
Match: gi|659126970|ref|XP_008463453.1| (PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 2

Query: 62  ESWLKPSNYRQFSYREYRQQIEKDVEKTGNKVGLSRFF 121
           ESWLKPS Y+QFSY+EYRQQIEKDVEKTGNKVGLSRFF
Sbjct: 298 ESWLKPSIYKQFSYKEYRQQIEKDVEKTGNKVGLSRFF 335

Query: 122 176
           
Sbjct: 358 335

BLAST of WMU50165 vs. NCBI nr
Match: gi|778676167|ref|XP_004152933.2| (PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 2

Query: 62  ESWLKPSNYRQFSYREYRQQIEKDVEKTGNKVGLSRFF 121
           ESWLKPS Y+ FSY+EYRQQIEKDVEKTGNKVGLSRFF
Sbjct: 299 ESWLKPSIYKHFSYKEYRQQIEKDVEKTGNKVGLSRFF 336

Query: 122 176
           
Sbjct: 359 336

BLAST of WMU50165 vs. NCBI nr
Match: gi|700201031|gb|KGN56164.1| (hypothetical protein Csa_3G081890 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 2

Query: 62  ESWLKPSNYRQFSYREYRQQIEKDVEKTGNKVGLSRFF 121
           ESWLKPS Y+ FSY+EYRQQIEKDVEKTGNKVGLSRFF
Sbjct: 143 ESWLKPSIYKHFSYKEYRQQIEKDVEKTGNKVGLSRFF 180

Query: 122 176
           
Sbjct: 203 180

BLAST of WMU50165 vs. NCBI nr
Match: gi|1000957715|ref|XP_002522845.2| (PREDICTED: gibberellin 2-beta-dioxygenase 8 [Ricinus communis])

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-07
Identity = 26/37 (70.27%), Postives = 35/37 (94.59%), Query Frame = 2

Query: 62  ESWLKPSNYRQFSYREYRQQIEKDVEKTGNKVGLSRF 121
           ES++KP+ YR+FS+REY+QQI+KDV+ TGNK+GLSRF
Sbjct: 311 ESYIKPAKYRKFSFREYKQQIQKDVQATGNKIGLSRF 347

Query: 122 173
           
Sbjct: 371 347

BLAST of WMU50165 vs. NCBI nr
Match: gi|223537929|gb|EEF39543.1| (gibberellin 20-oxidase, putative [Ricinus communis])

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-07
Identity = 26/37 (70.27%), Postives = 35/37 (94.59%), Query Frame = 2

Query: 62  ESWLKPSNYRQFSYREYRQQIEKDVEKTGNKVGLSRF 121
           ES++KP+ YR+FS+REY+QQI+KDV+ TGNK+GLSRF
Sbjct: 291 ESYIKPAKYRKFSFREYKQQIQKDVQATGNKIGLSRF 327

Query: 122 173
           
Sbjct: 351 327

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G50960.19.3e-0765.63 gibberellin 2-oxidase 7[more]
Match NameE-valueIdentityDescription
gi|659126970|ref|XP_008463453.1|2.6e-1192.11PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cucumis melo][more]
gi|778676167|ref|XP_004152933.2|1.0e-1089.47PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cucumis sativus][more]
gi|700201031|gb|KGN56164.1|1.0e-1089.47hypothetical protein Csa_3G081890 [Cucumis sativus][more]
gi|1000957715|ref|XP_002522845.2|3.0e-0770.27PREDICTED: gibberellin 2-beta-dioxygenase 8 [Ricinus communis][more]
gi|223537929|gb|EEF39543.1|3.0e-0770.27gibberellin 20-oxidase, putative [Ricinus communis][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla005259Cla005259gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0032169S1_0032169EST