WMU48212 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU48212
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr4 : 3698290 .. 3699118 (+)
Sequence length	654

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CATTATTCTCCTGATTATAAACATGGACTATGCAAGATGATAATATACAGAGAACTCAGGATTCAGTTAGGTTAAAACTTGGAACTGATTTATTGGAGTGAAACAAATCACAAGTTCAAACAGAAAAAGAGAGGGAACAAGATCAACCACAGACCAAGCAAGGCCTGCATATTGAACGAACCTAATACCCGTGTCAATGTCAAATGAGTCCTGGCTCGAGAAGAAGAACAGCTTGTGAAGAGGACCATGTTGTTTGCTCCCATCTACCTTCTTACCAGTTAAGGATGAATTTAGCATTGGGATATAGCTGGTTGATCTTATGGACATGCCCAAGGTGTTCGAAACAATGGGAAGGATCCATTTAGCCAGAGCTTTGCTACAAAACTTCACCATTAATATGGTTGGTAAACCGACGAGCATCCGACCAAGAAACGTGGAAAATGAGAGTTGTGGAGTAAAGATACGGGCAACGCCTTCGTGGTGAAACTGATGGTATGTCTGCTGTACTCCTGCTACAATTCCAAATGCAACACCATCAAAAGCCGTGTGGAATTCAAAGCTTGGAGTAGGAAACTCAGGAGTAGGATAAGCAAAAGAGCAACAGAATAGCTCAGGGCACCCCACGAAATAAAGTAACATTTTAGGTCCGTGGTA

Library


Library category	ESTs
watermelon fruit 10d library	3
watermelon fruit 18d library	2
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU48212 vs. TAIR10
Match: AT3G58490.1 (AT3G58490.1 Phosphatidic acid phosphatase (PAP2) family protein)

HSP 1 Score: 181.4 bits (459), Expect = 5.9e-46
Identity = 94/164 (57.32%), Postives = 107/164 (65.24%), Query Frame = -1


Query: 118 FCCSFAYXXXXXXXXXXXXHTAFDGVAFGIVAGVQQTYHQFHHEGVARIFTPQLSFSTFL 177
           F   FAY            HTAF+GV  GIV GVQQTY QFHHE   RIF+P+L  S++L
Sbjct: 250 FLLLFAYPTPEHPTPSYEYHTAFNGVTLGIVTGVQQTYSQFHHEAAPRIFSPELPISSYL 309

Query: 178 GRMLVGLPTILMVKFCSKALAKWILPIVSNTLGMSIRSTSYIPMLNSSLTGKKVDGSKQH 237
           GR++VG+PTIL+VKFCSK+LAKW LP+VSN LG+ IRS+ YIP L    +GKK D  K  
Sbjct: 310 GRVMVGIPTILLVKFCSKSLAKWTLPMVSNALGIPIRSSMYIPKLKGYASGKKTDEPKNS 369

Query: 238 -GPLHKLXXXXXXXXXXXXTGIRFVQYAGLAWSVVDLVPSLFLF 297
            G L KL            TGIRF QYAGLAWSVVDLVPSLF +
Sbjct: 370 VGYLQKLCEFLSHDSFDIDTGIRFFQYAGLAWSVVDLVPSLFSY 413

Query: 298  357
           
Sbjct: 430  413

Query: 358  417
           
Sbjct: 490  413

Query: 418  477
           
Sbjct: 550  413

Query: 478  537
           
Sbjct: 610  413

Query: 538  597
           
Sbjct: 670  413

Query: 598  607
           
Sbjct: 730  413

[Close]

BLAST of WMU48212 vs. Swiss-Prot
Match: LPPD_ARATH (Lipid phosphate phosphatase delta OS=Arabidopsis thaliana GN=LPPD PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-44
Identity = 94/164 (57.32%), Postives = 107/164 (65.24%), Query Frame = -1


Query: 118 FCCSFAYXXXXXXXXXXXXHTAFDGVAFGIVAGVQQTYHQFHHEGVARIFTPQLSFSTFL 177
           F   FAY            HTAF+GV  GIV GVQQTY QFHHE   RIF+P+L  S++L
Sbjct: 250 FLLLFAYPTPEHPTPSYEYHTAFNGVTLGIVTGVQQTYSQFHHEAAPRIFSPELPISSYL 309

Query: 178 GRMLVGLPTILMVKFCSKALAKWILPIVSNTLGMSIRSTSYIPMLNSSLTGKKVDGSKQH 237
           GR++VG+PTIL+VKFCSK+LAKW LP+VSN LG+ IRS+ YIP L    +GKK D  K  
Sbjct: 310 GRVMVGIPTILLVKFCSKSLAKWTLPMVSNALGIPIRSSMYIPKLKGYASGKKTDEPKNS 369

Query: 238 -GPLHKLXXXXXXXXXXXXTGIRFVQYAGLAWSVVDLVPSLFLF 297
            G L KL            TGIRF QYAGLAWSVVDLVPSLF +
Sbjct: 370 VGYLQKLCEFLSHDSFDIDTGIRFFQYAGLAWSVVDLVPSLFSY 413

Query: 298  357
           
Sbjct: 430  413

Query: 358  417
           
Sbjct: 490  413

Query: 418  477
           
Sbjct: 550  413

Query: 478  537
           
Sbjct: 610  413

Query: 538  597
           
Sbjct: 670  413

Query: 598  607
           
Sbjct: 730  413

[Close]

BLAST of WMU48212 vs. NCBI nr
Match: gi|449453856|ref|XP_004144672.1| (PREDICTED: lipid phosphate phosphatase delta [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 9.8e-59
Identity = 128/173 (73.99%), Postives = 132/173 (76.30%), Query Frame = -1


Query: 118 LLYFVGCPELFCCSFAYXXXXXXXXXXXXHTAFDGVAFGIVAGVQQTYHQFHHEGVARIF 177
           ++YF G   +    FAY            HTAFDGVAFGIVAGVQQTYHQFHHE VARIF
Sbjct: 233 VIYFWGALSILLL-FAYPTPEFPTPSFEFHTAFDGVAFGIVAGVQQTYHQFHHEAVARIF 292

Query: 178 TPQLSFSTFLGRMLVGLPTILMVKFCSKALAKWILPIVSNTLGMSIRSTSYIPMLNSSLT 237
           TPQL   TFLGRMLVGLPTILMVKFCSKALAKWILPIVSNTLGMSIRSTSYIPMLNSS T
Sbjct: 293 TPQLPLFTFLGRMLVGLPTILMVKFCSKALAKWILPIVSNTLGMSIRSTSYIPMLNSSST 352

Query: 238 GKKVDGSKQHGPLHKLXXXXXXXXXXXXTGIRFVQYAGLAWSVVDLVPSLFLF 297
           G KVDG KQ GPLHKL            TGIRFVQYAGLAWSVVDLVPSLF +
Sbjct: 353 G-KVDGCKQRGPLHKLFFFSSQDSFDIDTGIRFVQYAGLAWSVVDLVPSLFAY 403

Query: 298  357
           
Sbjct: 413  403

Query: 358  417
           
Sbjct: 473  403

Query: 418  477
           
Sbjct: 533  403

Query: 478  537
           
Sbjct: 593  403

Query: 538  597
           
Sbjct: 653  403

Query: 598  637
           
Sbjct: 713  403

[Close]

BLAST of WMU48212 vs. NCBI nr
Match: gi|659083131|ref|XP_008442198.1| (PREDICTED: lipid phosphate phosphatase delta [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-56
Identity = 126/173 (72.83%), Postives = 132/173 (76.30%), Query Frame = -1


Query: 118 LLYFVGCPELFCCSFAYXXXXXXXXXXXXHTAFDGVAFGIVAGVQQTYHQFHHEGVARIF 177
           ++YF G   +    FAY            HTAFDGVAFGIVAGVQQTYHQFHHE VA +F
Sbjct: 233 VIYFWGALSILLL-FAYPTPEFPTPSFEFHTAFDGVAFGIVAGVQQTYHQFHHEAVACVF 292

Query: 178 TPQLSFSTFLGRMLVGLPTILMVKFCSKALAKWILPIVSNTLGMSIRSTSYIPMLNSSLT 237
           TPQL  STFLGRMLVGLPTIL+VKFCSKALAKWILPIVSNTLGMSIRSTSYIPMLNSS T
Sbjct: 293 TPQLPISTFLGRMLVGLPTILIVKFCSKALAKWILPIVSNTLGMSIRSTSYIPMLNSSST 352

Query: 238 GKKVDGSKQHGPLHKLXXXXXXXXXXXXTGIRFVQYAGLAWSVVDLVPSLFLF 297
           G KVDG KQ GPLHKL            TGIRFVQYAGLAWSVVDLVPSLF +
Sbjct: 353 G-KVDGCKQRGPLHKL-FFSSQDSFDIDTGIRFVQYAGLAWSVVDLVPSLFAY 402

Query: 298  357
           
Sbjct: 413  402

Query: 358  417
           
Sbjct: 473  402

Query: 418  477
           
Sbjct: 533  402

Query: 478  537
           
Sbjct: 593  402

Query: 538  597
           
Sbjct: 653  402

Query: 598  637
           
Sbjct: 713  402

[Close]

BLAST of WMU48212 vs. NCBI nr
Match: gi|743907342|ref|XP_011047096.1| (PREDICTED: lipid phosphate phosphatase delta isoform X1 [Populus euphratica])

HSP 1 Score: 211.1 bits (536), Expect = 2.0e-51
Identity = 108/159 (67.92%), Postives = 121/159 (76.10%), Query Frame = -1


Query: 118 FAYXXXXXXXXXXXXHTAFDGVAFGIVAGVQQTYHQFHHEGVARIFTPQLSFSTFLGRML 177
           FAY            HTAFDGVAFGIVAGVQQTYHQFHHE V RIFTPQL+ S FLGRML
Sbjct: 246 FAYPTPELPTPSFEFHTAFDGVAFGIVAGVQQTYHQFHHESVPRIFTPQLTLSAFLGRML 305

Query: 178 VGLPTILMVKFCSKALAKWILPIVSNTLGMSIRSTSYIPMLNSSLTGKKVDGSKQHGPLH 237
           VG+PTIL+VK+CSKALAKWILPIV+NTLG+ I+STSYIPML  S+TGKK +  KQ G + 
Sbjct: 306 VGIPTILIVKYCSKALAKWILPIVTNTLGIPIKSTSYIPMLKGSVTGKKTEELKQSGYIK 365

Query: 238 KLXXXXXXXXXXXXTGIRFVQYAGLAWSVVDLVPSLFLF 297
           KL            TGIRF+QY+GLAWSVVDLVPSLF +
Sbjct: 366 KLPVFSSQGSFDVDTGIRFLQYSGLAWSVVDLVPSLFSY 404

Query: 298  357
           
Sbjct: 426  404

Query: 358  417
           
Sbjct: 486  404

Query: 418  477
           
Sbjct: 546  404

Query: 478  537
           
Sbjct: 606  404

Query: 538  595
           
Sbjct: 666  404

[Close]

BLAST of WMU48212 vs. NCBI nr
Match: gi|224088158|ref|XP_002308348.1| (phosphatidic acid phosphatase family protein [Populus trichocarpa])

HSP 1 Score: 209.9 bits (533), Expect = 4.4e-51
Identity = 109/159 (68.55%), Postives = 120/159 (75.47%), Query Frame = -1


Query: 118 FAYXXXXXXXXXXXXHTAFDGVAFGIVAGVQQTYHQFHHEGVARIFTPQLSFSTFLGRML 177
           FAY            HTAFDGVAFGIVAGVQQTYHQFHHE V RIFTPQL  S FLGRML
Sbjct: 246 FAYPTPELPTPSFEFHTAFDGVAFGIVAGVQQTYHQFHHESVPRIFTPQLPLSAFLGRML 305

Query: 178 VGLPTILMVKFCSKALAKWILPIVSNTLGMSIRSTSYIPMLNSSLTGKKVDGSKQHGPLH 237
           VG+PTIL+VK+CSKALAKWILPIVSNTLG+ I+STSYIPML  S+TGKK+   KQ G + 
Sbjct: 306 VGIPTILIVKYCSKALAKWILPIVSNTLGIPIKSTSYIPMLKGSVTGKKMVELKQSGYIK 365

Query: 238 KLXXXXXXXXXXXXTGIRFVQYAGLAWSVVDLVPSLFLF 297
           KL            TGIRF+QY+GLAWSVVDLVPSLF +
Sbjct: 366 KLPVFSSQGSFDVDTGIRFLQYSGLAWSVVDLVPSLFSY 404

Query: 298  357
           
Sbjct: 426  404

Query: 358  417
           
Sbjct: 486  404

Query: 418  477
           
Sbjct: 546  404

Query: 478  537
           
Sbjct: 606  404

Query: 538  595
           
Sbjct: 666  404

[Close]

BLAST of WMU48212 vs. NCBI nr
Match: gi|743907344|ref|XP_011047097.1| (PREDICTED: lipid phosphate phosphatase delta isoform X2 [Populus euphratica])

HSP 1 Score: 209.5 bits (532), Expect = 5.8e-51
Identity = 105/144 (72.92%), Postives = 118/144 (81.94%), Query Frame = -1


Query: 118 HTAFDGVAFGIVAGVQQTYHQFHHEGVARIFTPQLSFSTFLGRMLVGLPTILMVKFCSKA 177
           HTAFDGVAFGIVAGVQQTYHQFHHE V RIFTPQL+ S FLGRMLVG+PTIL+VK+CSKA
Sbjct: 242 HTAFDGVAFGIVAGVQQTYHQFHHESVPRIFTPQLTLSAFLGRMLVGIPTILIVKYCSKA 301

Query: 178 LAKWILPIVSNTLGMSIRSTSYIPMLNSSLTGKKVDGSKQHGPLHKLXXXXXXXXXXXXT 237
           LAKWILPIV+NTLG+ I+STSYIPML  S+TGKK +  KQ G + KL            T
Sbjct: 302 LAKWILPIVTNTLGIPIKSTSYIPMLKGSVTGKKTEELKQSGYIKKLPVFSSQGSFDVDT 361

Query: 238 GIRFVQYAGLAWSVVDLVPSLFLF 297
           GIRF+QY+GLAWSVVDLVPSLF +
Sbjct: 362 GIRFLQYSGLAWSVVDLVPSLFSY 385

Query: 298  357
           
Sbjct: 422  385

Query: 358  417
           
Sbjct: 482  385

Query: 418  477
           
Sbjct: 542  385

Query: 478  537
           
Sbjct: 602  385

Query: 538  550
           
Sbjct: 662  385

The following BLAST results are available for this feature:

BLAST of WMU48212 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58490.1	5.9e-46	57.32	Phosphatidic acid phosphatase (PAP2) family protein	[more]

BLAST of WMU48212 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LPPD_ARATH	1.1e-44	57.32	Lipid phosphate phosphatase delta OS=Arabidopsis thaliana GN=LPPD PE=2 SV=1	[more]

BLAST of WMU48212 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453856\|ref\|XP_004144672.1\|	9.8e-59	73.99	PREDICTED: lipid phosphate phosphatase delta [Cucumis sativus]	[more]
gi\|659083131\|ref\|XP_008442198.1\|	1.2e-56	72.83	PREDICTED: lipid phosphate phosphatase delta [Cucumis melo]	[more]
gi\|743907342\|ref\|XP_011047096.1\|	2.0e-51	67.92	PREDICTED: lipid phosphate phosphatase delta isoform X1 [Populus euphratica]	[more]
gi\|224088158\|ref\|XP_002308348.1\|	4.4e-51	68.55	phosphatidic acid phosphatase family protein [Populus trichocarpa]	[more]
gi\|743907344\|ref\|XP_011047097.1\|	5.8e-51	72.92	PREDICTED: lipid phosphate phosphatase delta isoform X2 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla001126	Cla001126	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0043888	S1_0043888	EST
S1_0046413	S1_0046413	EST
S1_0128638	S1_0128638	EST
S2_0143031	S2_0143031	EST
S2_0180943	S2_0180943	EST
S3_0066015	S3_0066015	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14969	SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE	coord: 20..167 score: 4.5
None	No IPR available	PANTHER	PTHR14969:SF3	DIHYDROSPHINGOSINE 1-PHOSPHATE PHOSPHATASE LCB3-RELATED	coord: 20..167 score: 4.5