WMU48076 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU48076
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 4619438 .. 4619615 (-)
Sequence length179
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ACAGTCTGAGCACATTCGGAGATTCTTTATAACACGAATTGGTAAATGCTTTTCTGTGCTTATAAGCCCGTAAGCCATTGCCAGCTTCTCACTATGCCGATTGAGTAGATATTGTTTCTCCTGCTCATTTACGTCAAGAAGAACATTGGTTACATCAGGAACATAACCAACATCCCCCG
Homology
[Close]
BLAST of WMU48076 vs. TAIR10
Match: AT3G22690.1 (AT3G22690.1 Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 86.7 bits (213), Expect = 5.4e-18
Identity = 38/57 (66.67%), Postives = 50/57 (87.72%), Query Frame = -3 

Query: 1   VGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           +G+VPD++NVL+DV+E+EK ++L+RHSEKLAMAYGLIS+ K   IR++KNLR+CSDC
Sbjct: 749 LGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDC 805

Query: 61   120
           
Sbjct: 809  805

Query: 121  172
           
Sbjct: 869  805

[Close]
BLAST of WMU48076 vs. TAIR10
Match: AT3G13770.1 (AT3G13770.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-14
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = -3 

Query: 1   GYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           GYVPD++ VL DV+E++K+ +L  HSEKLA+ +GLI+T + +PIRV KNLR+C DC
Sbjct: 536 GYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDC 591

Query: 61   120
           
Sbjct: 596  591

Query: 121  169
           
Sbjct: 656  591

[Close]
BLAST of WMU48076 vs. TAIR10
Match: AT1G56690.1 (AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 6.2e-14
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = -3 

Query: 1   DVGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           + GY PD ++VL DV+E+EK   L+RHSE+LA+AYGL+   + +PIRV+KNLR+C DC
Sbjct: 610 EAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDC 667

Query: 61   120
           
Sbjct: 670  667

Query: 121  175
           
Sbjct: 730  667

[Close]
BLAST of WMU48076 vs. TAIR10
Match: AT4G33170.1 (AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 8.0e-14
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = -3 

Query: 1   GYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           GYVP+    L+DV E+EK+  L  HSEKLA+A+GL+ST    PIRVIKNLR+C DC
Sbjct: 898 GYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDC 953

Query: 61   120
           
Sbjct: 958  953

Query: 121  169
           
Sbjct: 1018  953

[Close]
BLAST of WMU48076 vs. TAIR10
Match: AT2G22070.1 (AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-13
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -3 

Query: 1   VGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           +GYVPD  +VL D+ E+ K+ +L  HSEKLA+A+GLIST     +R++KNLR+C+DC
Sbjct: 693 MGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDC 749

Query: 61   120
           
Sbjct: 753  749

Query: 121  172
           
Sbjct: 813  749

[Close]
BLAST of WMU48076 vs. Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.5e-17
Identity = 38/57 (66.67%), Postives = 50/57 (87.72%), Query Frame = -3 

Query: 1   VGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           +G+VPD++NVL+DV+E+EK ++L+RHSEKLAMAYGLIS+ K   IR++KNLR+CSDC
Sbjct: 749 LGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDC 805

Query: 61   120
           
Sbjct: 809  805

Query: 121  172
           
Sbjct: 869  805

[Close]
BLAST of WMU48076 vs. Swiss-Prot
Match: OGR1_ORYSJ (Pentatricopeptide repeat-containing protein OGR1, mitochondrial OS=Oryza sativa subsp. japonica GN=OGR1 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.9e-13
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = -3 

Query: 1   DVGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           ++GY P+ +NVL D+ E+EKQY L  HSEKLA+A+GLI+T     +RVIKNLR+C DC
Sbjct: 493 ELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDC 550

Query: 61   120
           
Sbjct: 553  550

Query: 121  175
           
Sbjct: 613  550

[Close]
BLAST of WMU48076 vs. Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-13
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = -3 

Query: 1   GYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           GYVPD++ VL DV+E++K+ +L  HSEKLA+ +GLI+T + +PIRV KNLR+C DC
Sbjct: 536 GYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDC 591

Query: 61   120
           
Sbjct: 596  591

Query: 121  169
           
Sbjct: 656  591

[Close]
BLAST of WMU48076 vs. Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-12
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = -3 

Query: 1   DVGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           + GY PD ++VL DV+E+EK   L+RHSE+LA+AYGL+   + +PIRV+KNLR+C DC
Sbjct: 610 EAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDC 667

Query: 61   120
           
Sbjct: 670  667

Query: 121  175
           
Sbjct: 730  667

[Close]
BLAST of WMU48076 vs. Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-12
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = -3 

Query: 1   GYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           GYVP+    L+DV E+EK+  L  HSEKLA+A+GL+ST    PIRVIKNLR+C DC
Sbjct: 898 GYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDC 953

Query: 61   120
           
Sbjct: 958  953

Query: 121  169
           
Sbjct: 1018  953

[Close]
BLAST of WMU48076 vs. NCBI nr
Match: gi|778678432|ref|XP_011650966.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g22690 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 3.6e-24
Identity = 55/59 (93.22%), Postives = 59/59 (100.00%), Query Frame = -3 

Query: 1   GDVGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           GDVGYVPDVTNVLLDVNEQEKQYLLNRHSEKLA+AYGLIST+KH+PIRV+KNLRMCSDC
Sbjct: 746 GDVGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAVAYGLISTKKHVPIRVMKNLRMCSDC 804

Query: 61   120
           
Sbjct: 806  804

Query: 121  178
           
Sbjct: 866  804

[Close]
BLAST of WMU48076 vs. NCBI nr
Match: gi|659076373|ref|XP_008438644.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g22690 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 8.9e-23
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = -3 

Query: 1   DVGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           DVGYVP+VTNVLLDVNEQEK YLLNRHSEKLAMAYGLIST+KH+PIRV+KNLRMCSDC
Sbjct: 747 DVGYVPEVTNVLLDVNEQEKXYLLNRHSEKLAMAYGLISTKKHVPIRVMKNLRMCSDC 804

Query: 61   120
           
Sbjct: 807  804

Query: 121  175
           
Sbjct: 867  804

[Close]
BLAST of WMU48076 vs. NCBI nr
Match: gi|922355202|ref|XP_003610748.2| (pentatricopeptide (PPR) repeat protein [Medicago truncatula])

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = -3 

Query: 1   VGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           VGYVPD TNVL+DV+EQEK++LL+RHSEKLAMAYGLI+T K +PIRV+KNLRMCSDC
Sbjct: 745 VGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDC 801

Query: 61   120
           
Sbjct: 805  801

Query: 121  172
           
Sbjct: 865  801

[Close]
BLAST of WMU48076 vs. NCBI nr
Match: gi|593788140|ref|XP_007157109.1| (hypothetical protein PHAVU_002G043500g [Phaseolus vulgaris])

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = -3 

Query: 1   VGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           +GYVPD TNVLLDV+EQEK++LL+RHSEKLAMAYGLI+T + +PIRV+KNLRMCSDC
Sbjct: 745 IGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTSQGIPIRVVKNLRMCSDC 801

Query: 61   120
           
Sbjct: 805  801

Query: 121  172
           
Sbjct: 865  801

[Close]
BLAST of WMU48076 vs. NCBI nr
Match: gi|502159286|ref|XP_004511454.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g22690 [Cicer arietinum])

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 45/56 (80.36%), Postives = 53/56 (94.64%), Query Frame = -3 

Query: 1   GYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDC 60
           GYVPD TNVLL+++EQEK+YLL+RHSEKLAMAYGLI+T K +PIRV+KNLRMCSDC
Sbjct: 734 GYVPDTTNVLLNIDEQEKEYLLSRHSEKLAMAYGLINTSKGIPIRVVKNLRMCSDC 789

Query: 61   120
           
Sbjct: 794  789

Query: 121  169
           
Sbjct: 854  789

The following BLAST results are available for this feature:
BLAST of WMU48076 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22690.15.4e-1866.67 Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatrico... [more]
AT3G13770.14.7e-1458.93 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G56690.16.2e-1456.90 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G33170.18.0e-1460.71 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G22070.11.8e-1354.39 pentatricopeptide (PPR) repeat-containing protein[more]
BLAST of WMU48076 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP249_ARATH9.5e-1766.67Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN... [more]
OGR1_ORYSJ4.9e-1358.62Pentatricopeptide repeat-containing protein OGR1, mitochondrial OS=Oryza sativa ... [more]
PP227_ARATH8.4e-1358.93Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS... [more]
PPR84_ARATH1.1e-1256.90Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidop... [more]
PP347_ARATH1.4e-1260.71Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN... [more]
BLAST of WMU48076 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778678432|ref|XP_011650966.1|3.6e-2493.22PREDICTED: pentatricopeptide repeat-containing protein At3g22690 [Cucumis sativu... [more]
gi|659076373|ref|XP_008438644.1|8.9e-2391.38PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g... [more]
gi|922355202|ref|XP_003610748.2|6.0e-1980.70pentatricopeptide (PPR) repeat protein [Medicago truncatula][more]
gi|593788140|ref|XP_007157109.1|6.0e-1978.95hypothetical protein PHAVU_002G043500g [Phaseolus vulgaris][more]
gi|502159286|ref|XP_004511454.1|6.0e-1980.36PREDICTED: pentatricopeptide repeat-containing protein At3g22690 [Cicer arietinu... [more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021603Cla021603gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S3_0042232S3_0042232EST
S3_0046867S3_0046867EST
S3_0049203S3_0049203EST
S3_0053723S3_0053723EST
S3_0078377S3_0078377EST
S3_0091204S3_0091204EST
S3_0105470S3_0105470EST
S3_0139402S3_0139402EST
S3_0139617S3_0139617EST


InterPro
Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
No results