WMU47339 (transcribed_cluster) Watermelon (97103) v1

NameWMU47339
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 13559700 .. 13560658 (+)
Sequence length872
The following sequences are available for this feature:

transcribed_cluster sequence

ACCCTTTTTTTATTTAGAAATTAGAAACTACTGATTGTATACTGGGTCCAAAAGTTCCACTTCATGTTTGCTTCCAATCCAGATGTGGCCAGCCTGAGATTTCAACAAAATCCAGTTGAAACCTGCTAAAAATTTACTTCGATTCGTGAACTCTGTTATTCTCTTCTGTAATCTCATTTTTACTGGCAACTTCATTTTCTTTACTGATTAACTTGTCGCCTTCTGGCTCATTGTAGAAGATTGAATTTGGTTTTGATGATTGCTCCTTCATGTAGCTGATATCTGAATCCAAGTTTAGAACAGATGGCCTACTTTCTTTGGCAGGTTCTATTGGTAATTCTTCTTGATTTCTTTCTGCCATGTCTGCATCTTCATATTCTGAACTGCAACTTTCAAGCTCAACAGGACAAATATTTTCGAATCTAAATATCTCGTCTGAATAGTCAATCTTACTGGAAGGTATGCTAGCTTCTTTTGTATTAAGGTTAGGTTCATGAGAACTATCCAAATCTGAGCTTTTTTCATTCTTTTGTAGATGAGATCCATCTTCATGATCTGAATCAATATCCTGTGATTCAGACTTCGAAAGTTTGATTGCAGCTTTAGCTGCTAATGCTGCATAAGCTGCTGATTGGAAGGCTTCTTGAGCAGCACTAGCTACATCTTTAAACTTATTTGCTTTCACTGATTCCGATGCTGACTTATCACTTGTAATAACTTCATGTAGATCATCTGTGGTGTTTATGACTTCAGGATTATCCAAATCTGCTGCTTTATTGGCTCCCAACTTTTGGTTTACCTTATCCTGCTTGATGATTATTGGTGGTTCTTCCTCCAAATGCAGAGTAATGCCATTCTCCGAAGCAATTTCC
BLAST of WMU47339 vs. NCBI nr
Match: gi|659123287|ref|XP_008461584.1| (PREDICTED: uncharacterized protein LOC103500154 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 1.1e-73
Identity = 166/245 (67.76%), Postives = 183/245 (74.69%), Query Frame = -2

Query: 137 EIASENGITLHLEEEPPIIIKQDKVNQKLGANKAADLDNPEVINTTDDLHEVITSDKSAS 196
           EIASENGI L+LEEEPPII+K+ K+NQKL   K ADL NPEV NTTDDLHEVITS+K AS
Sbjct: 177 EIASENGIPLNLEEEPPIIVKE-KLNQKLEVKKEADLYNPEVTNTTDDLHEVITSEKLAS 236

Query: 197 ESVKANKFKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDIDSDHEDGSHLQKNEKSS 256
           E VKA KFKDV                             QDIDSDHEDGSHLQKN KSS
Sbjct: 237 ELVKAKKFKDVASAAEEAFQSAAKAINFLKSES-------QDIDSDHEDGSHLQKNGKSS 296

Query: 257 DLDSSHEPNLNTKEASIPSSKIDYSDEIFRFENICPVELESCSSEYEDADMAERNQEELP 316
           +L+SS+E  LNTKEASIPSSKIDYSD+ F FE ICPV LESCSS+YEDADM E NQEELP
Sbjct: 297 ELNSSYESKLNTKEASIPSSKIDYSDDRFSFEKICPVGLESCSSQYEDADMEETNQEELP 356

Query: 317 IEPAKESRPSVLNLDSDISYMKEQSSKPNSIFYNEPEGDKLISKENEVASKNEITEENNR 376
            EPA ES  SVLNL SDI+  KEQSS+PNS FYNE +GDK+ISK+NEVAS  EI+EEN +
Sbjct: 357 KEPAIESTSSVLNLCSDINNTKEQSSEPNSTFYNESDGDKIISKDNEVASGKEISEENIK 413

Query: 377 VHESK 436
           VHE K
Sbjct: 417 VHEPK 413

Query: 437 496
           
Sbjct: 477 413

Query: 497 556
           
Sbjct: 537 413

Query: 557 616
           
Sbjct: 597 413

Query: 617 676
           
Sbjct: 657 413

Query: 677 736
           
Sbjct: 717 413

Query: 737 796
           
Sbjct: 777 413

Query: 797 856
           
Sbjct: 837 413

Query: 857 872
           
Sbjct: 897 413

BLAST of WMU47339 vs. NCBI nr
Match: gi|778680668|ref|XP_011651369.1| (PREDICTED: uncharacterized protein LOC105434874 isoform X1 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 3.0e-71
Identity = 161/245 (65.71%), Postives = 176/245 (71.84%), Query Frame = -2

Query: 137 EIASENGITLHLEEEPPIIIKQDKVNQKLGANKAADLDNPEVINTTDDLHEVITSDKSAS 196
           EIASENGI LHLE+E PIIIK  K NQKL   K ADL NPEV NTTDDLHEVITS+K AS
Sbjct: 177 EIASENGIPLHLEQESPIIIKA-KQNQKLEIKKEADLYNPEVTNTTDDLHEVITSEKMAS 236

Query: 197 ESVKANKFKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDIDSDHEDGSHLQKNEKSS 256
           E VK+ KFKDV                             QDIDSDHEDGSHLQKN K S
Sbjct: 237 ELVKSKKFKDVASATEEPFQSAAYAALAAKAAINLSKSKSQDIDSDHEDGSHLQKNGKGS 296

Query: 257 DLDSSHEPNLNTKEASIPSSKIDYSDEIFRFENICPVELESCSSEYEDADMAERNQEELP 316
           DL+SS+EP LNTKE  I S KIDYSD+ F FE ICPVELESCSS+YEDADM E NQEELP
Sbjct: 297 DLNSSYEPKLNTKEERISSCKIDYSDDRFSFEKICPVELESCSSQYEDADMEETNQEELP 356

Query: 317 IEPAKESRPSVLNLDSDISYMKEQSSKPNSIFYNEPEGDKLISKENEVASKNEITEENNR 376
            EPAKES    L  DSD++ MKEQSSKPNSIFYNE +GDK+ + +NEVAS  EI+EE+ R
Sbjct: 357 KEPAKESTSFALK-DSDVNNMKEQSSKPNSIFYNESDGDKITNTDNEVASGKEISEEDIR 416

Query: 377 VHESK 436
           VHESK
Sbjct: 417 VHESK 419

Query: 437 496
           
Sbjct: 477 419

Query: 497 556
           
Sbjct: 537 419

Query: 557 616
           
Sbjct: 597 419

Query: 617 676
           
Sbjct: 657 419

Query: 677 736
           
Sbjct: 717 419

Query: 737 796
           
Sbjct: 777 419

Query: 797 856
           
Sbjct: 837 419

Query: 857 872
           
Sbjct: 897 419

BLAST of WMU47339 vs. NCBI nr
Match: gi|778680671|ref|XP_011651370.1| (PREDICTED: uncharacterized protein LOC105434874 isoform X2 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 67/113 (59.29%), Postives = 70/113 (61.95%), Query Frame = -2

Query: 533 EIASENGITLHLEEEPPIIIKQDKVNQKLGANKAADLDNPEVINTTDDLHEVITSDKSAS 592
           EIASENGI LHLE+E PIIIK  K NQKL   K ADL NPEV NTTDDLHEVITS+K AS
Sbjct: 177 EIASENGIPLHLEQESPIIIKA-KQNQKLEIKKEADLYNPEVTNTTDDLHEVITSEKMAS 236

Query: 593 ESVKANKFKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDIDSDHEDGSHL 652
           E VK+ KFKDV                             QDIDSDHEDGSHL
Sbjct: 237 ELVKSKKFKDVASATEEPFQSAAYAALAAKAAINLSKSKSQDIDSDHEDGSHL 288

Query: 653 712
           
Sbjct: 297 288

Query: 713 772
           
Sbjct: 357 288

Query: 773 832
           
Sbjct: 417 288

Query: 833 872
           
Sbjct: 477 288

BLAST of WMU47339 vs. NCBI nr
Match: gi|590652944|ref|XP_007033286.1| (Regulator of Vps4 activity in the MVB pathway protein, putative [Theobroma cacao])

HSP 1 Score: 70.1 bits (170), Expect = 7.3e-09
Identity = 73/238 (30.67%), Postives = 104/238 (43.70%), Query Frame = -2

Query: 209 EIASENGITLHLEEEPPIIIKQ-----DKVNQKLGANKAADLDNPEVINTTDDLHEVITS 268
           EIASE GI LHLE + P+++++     +K N+   ANK+A+LD+PE   T  +L   +  
Sbjct: 175 EIASERGIALHLEVDSPVVVEEKMDVHEKQNEST-ANKSANLDDPEYKYTAIELPREVNL 234

Query: 269 DKSASESVKA-NKFKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDIDSDHEDGSHLQ 328
           D+  SESVKA  K++DV                             QD D D E GS  +
Sbjct: 235 DEKLSESVKARKKYRDVAAAAQEAFESAAYAAAAARAAVELSRTESQDFDPDDESGSSHK 294

Query: 329 KNEKS------SDLDSSHEPNLNTKEASIPSSKIDYSDEIFRFENICPVELESCSSEYED 388
           K   S       D D+S  P     EA   +  I++ +    FE I P++  S  SE ED
Sbjct: 295 KGGPSLKKGAFYDSDASATPEFQGYEA---ADGIEHPNNELGFEKIHPIDNYSSESEGED 354

Query: 389 ADMAERNQEELPIEPAK-----ESRPSVLNLDSDISYMKEQSSKPNSIFYNEPEGDKL 448
                   E   IE  +     E   S  + DSD+    E+    + +  NE  GD+L
Sbjct: 355 MTKTNNGLELNEIEEIEQRVWIERALSTSSSDSDVDISTERKLSSDQLRQNEQLGDEL 408

Query: 449 508
           
Sbjct: 415 408

Query: 509 568
           
Sbjct: 475 408

Query: 569 628
           
Sbjct: 535 408

Query: 629 688
           
Sbjct: 595 408

Query: 689 748
           
Sbjct: 655 408

Query: 749 808
           
Sbjct: 715 408

Query: 809 868
           
Sbjct: 775 408

Query: 869 872
           
Sbjct: 835 408

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659123287|ref|XP_008461584.1|1.1e-7367.76PREDICTED: uncharacterized protein LOC103500154 [Cucumis melo][more]
gi|778680668|ref|XP_011651369.1|3.0e-7165.71PREDICTED: uncharacterized protein LOC105434874 isoform X1 [Cucumis sativus][more]
gi|778680671|ref|XP_011651370.1|2.2e-2159.29PREDICTED: uncharacterized protein LOC105434874 isoform X2 [Cucumis sativus][more]
gi|590652944|ref|XP_007033286.1|7.3e-0930.67Regulator of Vps4 activity in the MVB pathway protein, putative [Theobroma cacao... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla013242Cla013242gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
SSH0000181SSH0000181EST
SSH0002484SSH0002484EST
SSH0003030SSH0003030EST