WMU46651 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU46651
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 43339 .. 44050 (-)
Sequence length308
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GTCAAGGGAAGTAGGGGGAGGAGATGGGGGTCCTTCGATAGTCAGCGACTGCCACTGTACTGCCTGAAATTTGCCTTTGCCTCATTGACCAGTCTGCCATCGTTGATAAAACTGAATATTTGATTAACCGTTGCTGCAATCTGCTCCGCTGATCCTAGCTTACATTCATCTTCTATCTTTAGATTGAAGGAGTAAAGCATGGTGGCAGTGGCTTGCGAGGTAGTAATGTTGAGATGCAAAACTGTGAGCCTAAGATCTTCCAAAGCAACAATGGACTTTCAAACAAACAAGGCCTTGCCTTTTGGGGC
Homology
[Close]
BLAST of WMU46651 vs. TAIR10
Match: AT2G46810.1 (AT2G46810.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = -1 

Query: 114 KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIF 173
           +SI+ LE LR TVLHLNIT S    ++ YSFNLK+EDEC LGSA++I A + QIF
Sbjct: 316 RSIILLEKLRFTVLHLNIT-SPTNTSVSYSFNLKMEDECNLGSADEITAAIRQIF 369

Query: 174  233
           
Sbjct: 376  369

Query: 234  279
           
Sbjct: 436  369

[Close]
BLAST of WMU46651 vs. TAIR10
Match: AT3G61950.1 (AT3G61950.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-12
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = -1 

Query: 114 KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIF 173
           K I++LE L+LTVLHLNITTS + +++ YSFNLK+EDEC L SA++I A V++IF
Sbjct: 300 KGIISLEKLKLTVLHLNITTS-SHSSVSYSFNLKMEDECDLESADEITAAVHRIF 353

Query: 174  233
           
Sbjct: 360  353

Query: 234  279
           
Sbjct: 420  353

[Close]
BLAST of WMU46651 vs. TAIR10
Match: AT4G01460.1 (AT4G01460.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-11
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = -1 

Query: 102 KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIN 161
           K+IV++E+L+L +LHL I++S     ++YSFNLK+ED CKLGSA++IA  V+QIF  IN
Sbjct: 248 KAIVSIEELKLAILHLTISSS--FDFVIYSFNLKMEDGCKLGSADEIATAVHQIFEQIN 304

Query: 162  221
           
Sbjct: 308  304

Query: 222  279
           
Sbjct: 368  304

[Close]
BLAST of WMU46651 vs. TAIR10
Match: AT3G24140.1 (AT3G24140.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-10
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = -1 

Query: 102 KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIN 161
           K+I ALEDL L++LH NITT +   T+LYSFN+KI  E +  +AE IA+++ QIFSFI+
Sbjct: 342 KTIAALEDLHLSILHTNITTME--QTVLYSFNVKITSETRF-TAEDIASSIQQIFSFIH 397

Query: 162  221
           
Sbjct: 402  397

Query: 222  279
           
Sbjct: 462  397

[Close]
BLAST of WMU46651 vs. TAIR10
Match: AT1G72210.1 (AT1G72210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.3e-07
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = -1 

Query: 99  KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIND 158
           K + +++ LRLT+LHLN+TT   +  +LYS ++K+E+  +L + E IAA VNQI   I +
Sbjct: 258 KLVSSIQSLRLTLLHLNVTTRDDS--VLYSISVKVEEGSQLNTVEDIAAAVNQILRRIEE 315

Query: 159  218
           
Sbjct: 318  315

Query: 219  278
           
Sbjct: 378  315

[Close]
BLAST of WMU46651 vs. Swiss-Prot
Match: BH070_ARATH (Transcription factor bHLH70 OS=Arabidopsis thaliana GN=BHLH70 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-11
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = -1 

Query: 114 KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIF 173
           +SI+ LE LR TVLHLNIT S    ++ YSFNLK+EDEC LGSA++I A + QIF
Sbjct: 316 RSIILLEKLRFTVLHLNIT-SPTNTSVSYSFNLKMEDECNLGSADEITAAIRQIF 369

Query: 174  233
           
Sbjct: 376  369

Query: 234  279
           
Sbjct: 436  369

[Close]
BLAST of WMU46651 vs. Swiss-Prot
Match: BH067_ARATH (Transcription factor bHLH67 OS=Arabidopsis thaliana GN=BHLH67 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-10
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = -1 

Query: 114 KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIF 173
           K I++LE L+LTVLHLNITTS + +++ YSFNLK+EDEC L SA++I A V++IF
Sbjct: 300 KGIISLEKLKLTVLHLNITTS-SHSSVSYSFNLKMEDECDLESADEITAAVHRIF 353

Query: 174  233
           
Sbjct: 360  353

Query: 234  279
           
Sbjct: 420  353

[Close]
BLAST of WMU46651 vs. Swiss-Prot
Match: BH057_ARATH (Transcription factor bHLH57 OS=Arabidopsis thaliana GN=BHLH57 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-10
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = -1 

Query: 102 KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIN 161
           K+IV++E+L+L +LHL I++S     ++YSFNLK+ED CKLGSA++IA  V+QIF  IN
Sbjct: 248 KAIVSIEELKLAILHLTISSS--FDFVIYSFNLKMEDGCKLGSADEIATAVHQIFEQIN 304

Query: 162  221
           
Sbjct: 308  304

Query: 222  279
           
Sbjct: 368  304

[Close]
BLAST of WMU46651 vs. Swiss-Prot
Match: FAMA_ARATH (Transcription factor FAMA OS=Arabidopsis thaliana GN=FAMA PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.7e-09
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = -1 

Query: 102 KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIN 161
           K+I ALEDL L++LH NITT +   T+LYSFN+KI  E +  +AE IA+++ QIFSFI+
Sbjct: 342 KTIAALEDLHLSILHTNITTME--QTVLYSFNVKITSETRF-TAEDIASSIQQIFSFIH 397

Query: 162  221
           
Sbjct: 402  397

Query: 222  279
           
Sbjct: 462  397

[Close]
BLAST of WMU46651 vs. Swiss-Prot
Match: BH096_ARATH (Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.9e-06
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = -1 

Query: 99  KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIND 158
           K + +++ LRLT+LHLN+TT   +  +LYS ++K+E+  +L + E IAA VNQI   I +
Sbjct: 258 KLVSSIQSLRLTLLHLNVTTRDDS--VLYSISVKVEEGSQLNTVEDIAAAVNQILRRIEE 315

Query: 159  218
           
Sbjct: 318  315

Query: 219  278
           
Sbjct: 378  315

[Close]
BLAST of WMU46651 vs. NCBI nr
Match: gi|449432974|ref|XP_004134273.1| (PREDICTED: transcription factor bHLH67 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 69/78 (88.46%), Postives = 71/78 (91.03%), Query Frame = -1 

Query: 45  KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIND 104
           K IVALEDLRLTVLHLNI TSQ  ATMLYSFNLKIEDECKL S EQIAATVN+IFSFIN+
Sbjct: 282 KVIVALEDLRLTVLHLNI-TSQTAATMLYSFNLKIEDECKLESEEQIAATVNEIFSFINN 341

Query: 105 GRLVNEAKANFRQYSGSR 164
           GRLVNEAK NFRQYSGSR
Sbjct: 342 GRLVNEAKENFRQYSGSR 358

Query: 165  224
           
Sbjct: 402  358

Query: 225  279
           
Sbjct: 462  358

[Close]
BLAST of WMU46651 vs. NCBI nr
Match: gi|659074697|ref|XP_008437748.1| (PREDICTED: transcription factor bHLH67 isoform X1 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-24
Identity = 67/93 (72.04%), Postives = 73/93 (78.49%), Query Frame = -1 

Query: 3   KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIND 62
           K IVALEDLRLTVLHLNI TSQ  ATMLYSFNLKIEDECKL S EQIAATVNQIFSF+N+
Sbjct: 282 KVIVALEDLRLTVLHLNI-TSQTAATMLYSFNLKIEDECKLESEEQIAATVNQIFSFMNN 341

Query: 63  GRLVNEAKANFRQYS-GSR*LSKDPHLLPLLPL 122
           GRLVNEAK  F+     S  + +DP   PL P+
Sbjct: 342 GRLVNEAKGKFQAVQWQSLTMEEDPPFPPLFPI 373

Query: 123  182
           
Sbjct: 402  373

Query: 183  242
           
Sbjct: 462  373

Query: 243  279
           
Sbjct: 522  373

[Close]
BLAST of WMU46651 vs. NCBI nr
Match: gi|659074699|ref|XP_008437749.1| (PREDICTED: transcription factor bHLH70 isoform X2 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-24
Identity = 67/93 (72.04%), Postives = 73/93 (78.49%), Query Frame = -1 

Query: 3   KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIND 62
           K IVALEDLRLTVLHLNI TSQ  ATMLYSFNLKIEDECKL S EQIAATVNQIFSF+N+
Sbjct: 230 KVIVALEDLRLTVLHLNI-TSQTAATMLYSFNLKIEDECKLESEEQIAATVNQIFSFMNN 289

Query: 63  GRLVNEAKANFRQYS-GSR*LSKDPHLLPLLPL 122
           GRLVNEAK  F+     S  + +DP   PL P+
Sbjct: 290 GRLVNEAKGKFQAVQWQSLTMEEDPPFPPLFPI 321

Query: 123  182
           
Sbjct: 350  321

Query: 183  242
           
Sbjct: 410  321

Query: 243  279
           
Sbjct: 470  321

[Close]
BLAST of WMU46651 vs. NCBI nr
Match: gi|296089016|emb|CBI38719.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 44/59 (74.58%), Postives = 54/59 (91.53%), Query Frame = -1 

Query: 102 KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIN 161
           K+IVALEDL LTVLHLNIT+ Q+T  +LYSFNLKIED+CKLGSA+++AA V+Q+FSFIN
Sbjct: 297 KAIVALEDLSLTVLHLNITSLQST--VLYSFNLKIEDDCKLGSADEVAAAVHQVFSFIN 353

Query: 162  221
           
Sbjct: 357  353

Query: 222  279
           
Sbjct: 417  353

[Close]
BLAST of WMU46651 vs. NCBI nr
Match: gi|731420786|ref|XP_010661504.1| (PREDICTED: transcription factor bHLH70 isoform X2 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 44/59 (74.58%), Postives = 54/59 (91.53%), Query Frame = -1 

Query: 102 KSIVALEDLRLTVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAATVNQIFSFIN 161
           K+IVALEDL LTVLHLNIT+ Q+T  +LYSFNLKIED+CKLGSA+++AA V+Q+FSFIN
Sbjct: 302 KAIVALEDLSLTVLHLNITSLQST--VLYSFNLKIEDDCKLGSADEVAAAVHQVFSFIN 358

Query: 162  221
           
Sbjct: 362  358

Query: 222  279
           
Sbjct: 422  358

The following BLAST results are available for this feature:
BLAST of WMU46651 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46810.12.6e-1261.82 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G61950.15.8e-1261.82 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G01460.11.3e-1155.93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G24140.13.2e-1055.93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G72210.13.3e-0743.33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of WMU46651 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH070_ARATH4.6e-1161.82Transcription factor bHLH70 OS=Arabidopsis thaliana GN=BHLH70 PE=2 SV=1[more]
BH067_ARATH1.0e-1061.82Transcription factor bHLH67 OS=Arabidopsis thaliana GN=BHLH67 PE=2 SV=1[more]
BH057_ARATH2.3e-1055.93Transcription factor bHLH57 OS=Arabidopsis thaliana GN=BHLH57 PE=2 SV=1[more]
FAMA_ARATH5.7e-0955.93Transcription factor FAMA OS=Arabidopsis thaliana GN=FAMA PE=1 SV=1[more]
BH096_ARATH5.9e-0643.33Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1[more]
BLAST of WMU46651 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432974|ref|XP_004134273.1|2.7e-2788.46PREDICTED: transcription factor bHLH67 [Cucumis sativus][more]
gi|659074697|ref|XP_008437748.1|2.8e-2472.04PREDICTED: transcription factor bHLH67 isoform X1 [Cucumis melo][more]
gi|659074699|ref|XP_008437749.1|2.8e-2472.04PREDICTED: transcription factor bHLH70 isoform X2 [Cucumis melo][more]
gi|296089016|emb|CBI38719.3|1.5e-1474.58unnamed protein product [Vitis vinifera][more]
gi|731420786|ref|XP_010661504.1|1.5e-1474.58PREDICTED: transcription factor bHLH70 isoform X2 [Vitis vinifera][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021059Cla021059gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0014626S1_0014626EST
S1_0079470S1_0079470EST