WMU46041 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU46041
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr7 : 301873 .. 302816 (-)
Sequence length	552

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGTACTACTTACTTAGATGGCCATGACATTCTACAAATCCCTCAAGGATGGGACCAACGGGCAGTGACAAAAAGGAAAGACTGGATAGCGAGAACCGTTATCCATTGTTCGCTCAACCTCTAGTCCTCATGATTGTGATGCTTCCCTTTCCGCCTTCGGTGTGAATCTTGGTTTTACCTACTACAGGCTTTCCAGAGAACGCTGAAGTTGGGTAAGATTGAGATGGATCTTCGGGTTGATGCTTCAATTTTGATGGTGGAGGCGTGCGGATCCGCTGGTTTTTGTCCTTCAAGGTCACATCTCCATGGAATCCACACGGCTTGATAAAGGCAAATGGGTAGGCAACTGAAGAAGCCAATTTAGTGGGAGTTCTAATATACGACTTCCGACCTTTAAAAATTATGTTCGGAGGAGCTCGAGTAGGATGATGTTGGACCGCATTGGATTTGAACTCGGGTGCACCATCACAAAACTCTGATACATCGATTTGAATGTCCGAAGTCCCAACAAAGTTCAAAACCCTCAGGGGTACACTGCATATCAGCATCATTA

Library


Library category	ESTs
watermelon fruit 10d library	2

Homology

[Close]

BLAST of WMU46041 vs. TAIR10
Match: AT5G48720.2 (AT5G48720.2 x-ray induced transcript 1)

HSP 1 Score: 162.5 bits (410), Expect = 2.4e-40
Identity = 85/134 (63.43%), Postives = 101/134 (75.37%), Query Frame = -3


Query: 116 LNFVGTSDIQIDVSEFCDGAPEFKSNAVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY 175
           LNF G+ D+Q+D+SE+ +  PE ++  VQ   TR+ PN+IFKGRKS+ R  +KL SS+ Y
Sbjct: 170 LNF-GSPDVQVDISEYLNVPPETETREVQRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIY 229

Query: 176 PFAFIKPCGFHGDVTLKDKNQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT 235
           PFAFIKPCG HG +TLKD NQ+IR  PP+K K   E+P+    TSAFSGKPVVGKTKI T
Sbjct: 230 PFAFIKPCGVHGGMTLKDINQKIRN-PPAKPKAHIEEPA-VIQTSAFSGKPVVGKTKIRT 289

Query: 236 EGGKGSITIMRTRG 295
           EGGKGSITIMRTRG
Sbjct: 290 EGGKGSITIMRTRG 300

Query: 296  355
           
Sbjct: 350  300

Query: 356  415
           
Sbjct: 410  300

Query: 416  475
           
Sbjct: 470  300

Query: 476  518
           
Sbjct: 530  300

[Close]

BLAST of WMU46041 vs. Swiss-Prot
Match: XRI1_ARATH (Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2)

HSP 1 Score: 162.5 bits (410), Expect = 4.2e-39
Identity = 85/134 (63.43%), Postives = 101/134 (75.37%), Query Frame = -3


Query: 116 LNFVGTSDIQIDVSEFCDGAPEFKSNAVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY 175
           LNF G+ D+Q+D+SE+ +  PE ++  VQ   TR+ PN+IFKGRKS+ R  +KL SS+ Y
Sbjct: 170 LNF-GSPDVQVDISEYLNVPPETETREVQRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIY 229

Query: 176 PFAFIKPCGFHGDVTLKDKNQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT 235
           PFAFIKPCG HG +TLKD NQ+IR  PP+K K   E+P+    TSAFSGKPVVGKTKI T
Sbjct: 230 PFAFIKPCGVHGGMTLKDINQKIRN-PPAKPKAHIEEPA-VIQTSAFSGKPVVGKTKIRT 289

Query: 236 EGGKGSITIMRTRG 295
           EGGKGSITIMRTRG
Sbjct: 290 EGGKGSITIMRTRG 300

Query: 296  355
           
Sbjct: 350  300

Query: 356  415
           
Sbjct: 410  300

Query: 416  475
           
Sbjct: 470  300

Query: 476  518
           
Sbjct: 530  300

[Close]

BLAST of WMU46041 vs. NCBI nr
Match: gi|449453276|ref|XP_004144384.1| (PREDICTED: protein XRI1 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 1.4e-69
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = -3


Query: 116 LNFVGTSDIQIDVSEFCDGAPEFKSNAVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY 175
           L+F GTSDIQIDVSEFCDGAPEFKSN VQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY
Sbjct: 171 LSFAGTSDIQIDVSEFCDGAPEFKSNVVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY 230

Query: 176 PFAFIKPCGFHGDVTLKDKNQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT 235
           PFAFIKPCGFHGDVTLKD NQRIRTPPPSKLKHQPEDPS+SYPTSAFSGKPVVGKTKIHT
Sbjct: 231 PFAFIKPCGFHGDVTLKDINQRIRTPPPSKLKHQPEDPSESYPTSAFSGKPVVGKTKIHT 290

Query: 236 EGGKGSITIMRTRG 295
           EGGKGSITIMRTRG
Sbjct: 291 EGGKGSITIMRTRG 304

Query: 296  355
           
Sbjct: 351  304

Query: 356  415
           
Sbjct: 411  304

Query: 416  475
           
Sbjct: 471  304

Query: 476  518
           
Sbjct: 531  304

[Close]

BLAST of WMU46041 vs. NCBI nr
Match: gi|659123884|ref|XP_008461886.1| (PREDICTED: protein XRI1 isoform X2 [Cucumis melo])

HSP 1 Score: 270.0 bits (689), Expect = 3.0e-69
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = -3


Query: 116 LNFVGTSDIQIDVSEFCDGAPEFKSNAVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY 175
           L F GTSDIQIDVSEFCDGAPEFKSN V HHPTRAPPNIIFKGRKSYIRTPTKLASSVAY
Sbjct: 171 LGFAGTSDIQIDVSEFCDGAPEFKSNVVHHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY 230

Query: 176 PFAFIKPCGFHGDVTLKDKNQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT 235
           PFAFIKPCGFHGDVTLKD NQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT
Sbjct: 231 PFAFIKPCGFHGDVTLKDINQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT 290

Query: 236 EGGKGSITIMRTRG 295
           EGGKGSITIMRTRG
Sbjct: 291 EGGKGSITIMRTRG 304

Query: 296  355
           
Sbjct: 351  304

Query: 356  415
           
Sbjct: 411  304

Query: 416  475
           
Sbjct: 471  304

Query: 476  518
           
Sbjct: 531  304

[Close]

BLAST of WMU46041 vs. NCBI nr
Match: gi|659123882|ref|XP_008461885.1| (PREDICTED: protein XRI1 isoform X1 [Cucumis melo])

HSP 1 Score: 270.0 bits (689), Expect = 3.0e-69
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = -3


Query: 116 LNFVGTSDIQIDVSEFCDGAPEFKSNAVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY 175
           L F GTSDIQIDVSEFCDGAPEFKSN V HHPTRAPPNIIFKGRKSYIRTPTKLASSVAY
Sbjct: 172 LGFAGTSDIQIDVSEFCDGAPEFKSNVVHHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY 231

Query: 176 PFAFIKPCGFHGDVTLKDKNQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT 235
           PFAFIKPCGFHGDVTLKD NQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT
Sbjct: 232 PFAFIKPCGFHGDVTLKDINQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT 291

Query: 236 EGGKGSITIMRTRG 295
           EGGKGSITIMRTRG
Sbjct: 292 EGGKGSITIMRTRG 305

Query: 296  355
           
Sbjct: 352  305

Query: 356  415
           
Sbjct: 412  305

Query: 416  475
           
Sbjct: 472  305

Query: 476  518
           
Sbjct: 532  305

[Close]

BLAST of WMU46041 vs. NCBI nr
Match: gi|1009149077|ref|XP_015892286.1| (PREDICTED: protein XRI1 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 218.8 bits (556), Expect = 8.0e-54
Identity = 107/134 (79.85%), Postives = 116/134 (86.57%), Query Frame = -3


Query: 116 LNFVGTSDIQIDVSEFCDGAPEFKSNAVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY 175
           LNF G SD+QIDVSEFC+ APE+++N  Q    R P NI+FKGR+SYIRTP KLASSVAY
Sbjct: 170 LNFSGASDVQIDVSEFCEVAPEYENNMPQQRIARTPKNIVFKGRESYIRTPAKLASSVAY 229

Query: 176 PFAFIKPCGFHGDVTLKDKNQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT 235
           PFAFIKPCG HGDVTLKD NQRIRTPPPSK K Q EDP+ SYPTSAFSGKPVVGKTKIHT
Sbjct: 230 PFAFIKPCGIHGDVTLKDINQRIRTPPPSKSK-QNEDPAASYPTSAFSGKPVVGKTKIHT 289

Query: 236 EGGKGSITIMRTRG 295
           EGGKGSITIMRT+G
Sbjct: 290 EGGKGSITIMRTKG 302

Query: 296  355
           
Sbjct: 350  302

Query: 356  415
           
Sbjct: 410  302

Query: 416  475
           
Sbjct: 470  302

Query: 476  518
           
Sbjct: 530  302

[Close]

BLAST of WMU46041 vs. NCBI nr
Match: gi|223539649|gb|EEF41231.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 208.8 bits (530), Expect = 8.2e-51
Identity = 101/134 (75.37%), Postives = 115/134 (85.82%), Query Frame = -3


Query: 116 LNFVGTSDIQIDVSEFCDGAPEFKSNAVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAY 175
           +NF G  D+QID+SEFC+G    +++AVQ   TR P N+IFKG+KS+IRTPTKLASSV Y
Sbjct: 161 MNFPGACDVQIDISEFCNGPLGNEAHAVQKRITRTPRNVIFKGKKSFIRTPTKLASSVVY 220

Query: 176 PFAFIKPCGFHGDVTLKDKNQRIRTPPPSKLKHQPEDPSQSYPTSAFSGKPVVGKTKIHT 235
           PFAFIKPCGFHGDVTLKD NQ+IRTPPPSKLK   EDP+ +YPTSAFSGKPVVGKTKI T
Sbjct: 221 PFAFIKPCGFHGDVTLKDINQKIRTPPPSKLKQNEEDPA-AYPTSAFSGKPVVGKTKIRT 280

Query: 236 EGGKGSITIMRTRG 295
           EGGKGSITIMRT+G
Sbjct: 281 EGGKGSITIMRTKG 293

Query: 296  355
           
Sbjct: 341  293

Query: 356  415
           
Sbjct: 401  293

Query: 416  475
           
Sbjct: 461  293

Query: 476  518
           
Sbjct: 521  293

The following BLAST results are available for this feature:

BLAST of WMU46041 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48720.2	2.4e-40	63.43	x-ray induced transcript 1	[more]

BLAST of WMU46041 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XRI1_ARATH	4.2e-39	63.43	Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2	[more]

BLAST of WMU46041 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453276\|ref\|XP_004144384.1\|	1.4e-69	96.27	PREDICTED: protein XRI1 [Cucumis sativus]	[more]
gi\|659123884\|ref\|XP_008461886.1\|	3.0e-69	96.27	PREDICTED: protein XRI1 isoform X2 [Cucumis melo]	[more]
gi\|659123882\|ref\|XP_008461885.1\|	3.0e-69	96.27	PREDICTED: protein XRI1 isoform X1 [Cucumis melo]	[more]
gi\|1009149077\|ref\|XP_015892286.1\|	8.0e-54	79.85	PREDICTED: protein XRI1 isoform X1 [Ziziphus jujuba]	[more]
gi\|223539649\|gb\|EEF41231.1\|	8.2e-51	75.37	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla002715	Cla002715	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0031275	S1_0031275	EST
S1_0110490	S1_0110490	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33385	FAMILY NOT NAMED	coord: 2..146 score: 2.2
None	No IPR available	PANTHER	PTHR33385:SF4	PROTEIN XRI1	coord: 2..146 score: 2.2