WMU44054 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU44054
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein disulfide isomerase (PDI)-like protein 3
Location	Chr8 : 1767518 .. 1767905 (+)
Sequence length	399

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACTGTTTCAACAGATGCTCGTAAGCTTATATCATCTCATGGAGCAGATGCCTATCCATTCACAGAGGAACATGTGAAGCAATTGGAAGAGCAGTTGGAGAAACAGTTGGAAGAAGAGGCAAAGGGGTGGCCTGAGAAACTAAAACATAAACTACATGAAGAACATGAACTTGTTCGAACACATCGGGCTACATATTGTTGCGATGCGTGTGATGAGATGGGACATGGTTGGTCGTTTTACTGTGAGGAATGTGACTTCGATTTGCACCCAAAATGTGCTTTGAAAAAGGATGAGGGAACTGAGGAGCAGAAAGAAGGGTGGATTTGCGAGGGAGATGTGTGCCGTAGAGCCTAAGAAAATAAATGCAAAATTGGAAAGGATATGAAAGGCTATGAGGGT

Library


Library category	ESTs
watermelon fusarium SSH library	2

Homology

[Close]

BLAST of WMU44054 vs. TAIR10
Match: AT1G60420.1 (AT1G60420.1 DC1 domain-containing protein)

HSP 1 Score: 97.1 bits (240), Expect = 9.0e-21
Identity = 49/127 (38.58%), Postives = 61/127 (48.03%), Query Frame = 1


Query: 1   TVSTDARKLISSHGADAYPFTXXXXXXXXXXXXXXXXXXXXGWPXXXXXXXXXXXXXVRT 60
           TV+ +AR L+ +HGADAYPFT                     WP               T
Sbjct: 456 TVTKEARDLVVAHGADAYPFTEERLKEIEAKYDEIAKD----WPKKVKHVLHEEHELELT 515

Query: 61  HRATYCCDACDEMGHGWSFYCEECDFDLHPKCALKKDE----------GTEEQKEGWICE 120
               Y CD C+E G  WS++C+ECDFDLH KCAL +D           G +E K+GW+CE
Sbjct: 516 RVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDTKENGDEAVKVGGDESKDGWVCE 575

Query: 121 GDVCRRA 180
           G+VC +A
Sbjct: 576 GNVCTKA 578

Query: 181  240
           
Sbjct: 636  578

Query: 241  300
           
Sbjct: 696  578

Query: 301  352
           
Sbjct: 756  578

[Close]

BLAST of WMU44054 vs. TAIR10
Match: AT4G31240.1 (AT4G31240.1 protein kinase C-like zinc finger protein)

HSP 1 Score: 50.8 bits (120), Expect = 7.4e-07
Identity = 27/97 (27.84%), Postives = 42/97 (43.30%), Query Frame = 1


Query: 1   TVSTDARKLISSHGADAYPFTXXXXXXXXXXXXXXXXXXXXGWPXXXXXXXXXXXXXVRT 60
           TV+T+AR+++S +G+ ++PFT                      P             +  
Sbjct: 297 TVTTNAREMVSLYGSRSFPFTESRIVELKACLKKEGDSL----PRKVKDNKHEHELKLDM 356

Query: 61  HRATYCCDACDEMGHGWSFYCEECDFDLHPKCALKKD 120
            +A Y CD C + G  W+F C  CD+DLHP C  +++
Sbjct: 357 AKA-YVCDFCKKQGRFWAFSCNACDYDLHPTCVEEEE 388

Query: 121  180
           
Sbjct: 417  388

Query: 181  240
           
Sbjct: 477  388

Query: 241  292
           
Sbjct: 537  388

[Close]

BLAST of WMU44054 vs. Swiss-Prot
Match: NRX12_ORYSJ (Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-21
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = 1


Query: 1   TVSTDARKLISSHGADAYPFTXXXXXXXXXXXXXXXXXXXXGWPXXXXXXXXXXXXXVRT 60
           TV+ DA+  + +HGADA+PFT                    GWP             V T
Sbjct: 459 TVTKDAKTPLVAHGADAFPFTEEKLQELEKEKEKKINDMAKGWPEKLKHDLHDHEL-VLT 518

Query: 61  HRATYCCDACDEMGHGWSFYCEECDFDLHPKCALKK-------DEGTEEQKEGWICEGDV 120
              TY CD CDEMG  WS+ C+ECDFDLHPKCAL++       +E  E    G++CEGDV
Sbjct: 519 RCTTYGCDGCDEMGDSWSYRCKECDFDLHPKCALEEKGDVEMGEENAEAAPAGYVCEGDV 578

Query: 121 CRR 180
           CR+
Sbjct: 579 CRK 580

Query: 181  240
           
Sbjct: 639  580

Query: 241  300
           
Sbjct: 699  580

Query: 301  349
           
Sbjct: 759  580

[Close]

BLAST of WMU44054 vs. Swiss-Prot
Match: NRX1_ARATH (Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 49/127 (38.58%), Postives = 61/127 (48.03%), Query Frame = 1


Query: 1   TVSTDARKLISSHGADAYPFTXXXXXXXXXXXXXXXXXXXXGWPXXXXXXXXXXXXXVRT 60
           TV+ +AR L+ +HGADAYPFT                     WP               T
Sbjct: 456 TVTKEARDLVVAHGADAYPFTEERLKEIEAKYDEIAKD----WPKKVKHVLHEEHELELT 515

Query: 61  HRATYCCDACDEMGHGWSFYCEECDFDLHPKCALKKDE----------GTEEQKEGWICE 120
               Y CD C+E G  WS++C+ECDFDLH KCAL +D           G +E K+GW+CE
Sbjct: 516 RVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDTKENGDEAVKVGGDESKDGWVCE 575

Query: 121 GDVCRRA 180
           G+VC +A
Sbjct: 576 GNVCTKA 578

Query: 181  240
           
Sbjct: 636  578

Query: 241  300
           
Sbjct: 696  578

Query: 301  352
           
Sbjct: 756  578

[Close]

BLAST of WMU44054 vs. Swiss-Prot
Match: NRX11_ORYSJ (Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-19
Identity = 51/122 (41.80%), Postives = 59/122 (48.36%), Query Frame = 1


Query: 1   TVSTDARKLISSHGADAYPFTXXXXXXXXXXXXXXXXXXXXGWPXXXXXXXXXXXXXVRT 60
           TV+ DA+  +++HGADA+PFT                    GWP             V T
Sbjct: 452 TVARDAKTPLTAHGADAFPFTEERLLEMERKIDEMAK----GWPGKLKHELHDEHELVLT 511

Query: 61  HRATYCCDACDEMGHGWSFYCEECDFDLHPKCAL-----KKDEGTEEQKEGWICEGDVCR 120
              TY CD CDEMG  WS+ C ECDFDLHPKCAL     KK +   E +    CEG VCR
Sbjct: 512 RCTTYGCDGCDEMGSSWSYRCRECDFDLHPKCALGKEEEKKGDDEAEAEADPACEGGVCR 569

Query: 121 RA 180
           +A
Sbjct: 572 KA 569

Query: 181  240
           
Sbjct: 632  569

Query: 241  300
           
Sbjct: 692  569

Query: 301  352
           
Sbjct: 752  569

[Close]

BLAST of WMU44054 vs. NCBI nr
Match: gi|778707787|ref|XP_011656057.1| (PREDICTED: probable nucleoredoxin 1 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 3.9e-34
Identity = 71/116 (61.21%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 1   TVSTDARKLISSHGADAYPFTXXXXXXXXXXXXXXXXXXXXGWPXXXXXXXXXXXXXVRT 60
           TVSTDARKLI SHGADAYPFT                    GWP             VRT
Sbjct: 449 TVSTDARKLIQSHGADAYPFTEERLKQLEAQLEEEAK----GWPEKLNHELHEEHELVRT 508

Query: 61  HRATYCCDACDEMGHGWSFYCEECDFDLHPKCALKKDEGTEEQKEGWICEGDVCRR 120
           H+A Y CD CDEMG+GWSFYCEECDF LHP CA+K D+G EEQKEGWICEGDVCRR
Sbjct: 509 HQAEYSCDGCDEMGYGWSFYCEECDFSLHPNCAMKNDDGAEEQKEGWICEGDVCRR 560

Query: 121  180
           
Sbjct: 569  560

Query: 181  240
           
Sbjct: 629  560

Query: 241  300
           
Sbjct: 689  560

Query: 301  349
           
Sbjct: 749  560

[Close]

BLAST of WMU44054 vs. NCBI nr
Match: gi|659119204|ref|XP_008459530.1| (PREDICTED: probable nucleoredoxin 1 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-33
Identity = 71/116 (61.21%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 1   TVSTDARKLISSHGADAYPFTXXXXXXXXXXXXXXXXXXXXGWPXXXXXXXXXXXXXVRT 60
           TVSTDARKLI+SHGADAYPFT                    GWP             VRT
Sbjct: 449 TVSTDARKLITSHGADAYPFTEERLKQLEEQLEEEAK----GWPEKLKHELHEEHELVRT 508

Query: 61  HRATYCCDACDEMGHGWSFYCEECDFDLHPKCALKKDEGTEEQKEGWICEGDVCRR 120
           H+A Y CDACDEMG+GWSFYCEECDF LHP CA+K D   EEQKEGWICEGDVCRR
Sbjct: 509 HQAEYSCDACDEMGYGWSFYCEECDFSLHPNCAMKNDGEAEEQKEGWICEGDVCRR 560

Query: 121  180
           
Sbjct: 569  560

Query: 181  240
           
Sbjct: 629  560

Query: 241  300
           
Sbjct: 689  560

Query: 301  349
           
Sbjct: 749  560

[Close]

BLAST of WMU44054 vs. NCBI nr
Match: gi|449447547|ref|XP_004141529.1| (PREDICTED: probable nucleoredoxin 1 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 5.5e-28
Identity = 65/118 (55.08%), Postives = 72/118 (61.02%), Query Frame = 1


Query: 1   TVSTDARKLISSHGADAYPFTXXXXXXXXXXXXXXXXXXXXGWPXXXXXXXXXXXXXVRT 60
           TVST+ARKLI+ HGA+AYPFT                    GWP             VRT
Sbjct: 449 TVSTEARKLITEHGANAYPFTEERLEQLEKQLEEESK----GWPEKLKHELHDAHELVRT 508

Query: 61  HRATYCCDACDEMGHGWSFYCEECDFDLHPKCALKKD-EGTEEQKEGWICEGDVCRRA 120
            R +Y CDACD MG GWSFYC+ECDFDLHPKCALK + E   E KEGWICEG VCR+A
Sbjct: 509 RRTSYICDACDGMGSGWSFYCKECDFDLHPKCALKNEVEANGEGKEGWICEGGVCRKA 562

Query: 121  180
           
Sbjct: 569  562

Query: 181  240
           
Sbjct: 629  562

Query: 241  300
           
Sbjct: 689  562

Query: 301  352
           
Sbjct: 749  562

[Close]

BLAST of WMU44054 vs. NCBI nr
Match: gi|659119202|ref|XP_008459528.1| (PREDICTED: probable nucleoredoxin 1 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-27
Identity = 64/118 (54.24%), Postives = 73/118 (61.86%), Query Frame = 1


Query: 1   TVSTDARKLISSHGADAYPFTXXXXXXXXXXXXXXXXXXXXGWPXXXXXXXXXXXXXVRT 60
           TVST+ARKLI+ +GA+AYPFT                    GWP             VRT
Sbjct: 449 TVSTEARKLITEYGANAYPFTEERLKQLEEQLEEEAK----GWPEKLKHELHDAHELVRT 508

Query: 61  HRATYCCDACDEMGHGWSFYCEECDFDLHPKCALKKDEGTE-EQKEGWICEGDVCRRA 120
            R +Y CDACD MG GWSFYC+ECDFDLHPKCALK +E  + E KEGWICEG VCR+A
Sbjct: 509 RRRSYICDACDGMGSGWSFYCKECDFDLHPKCALKNEEEADGEGKEGWICEGGVCRKA 562

Query: 121  180
           
Sbjct: 569  562

Query: 181  240
           
Sbjct: 629  562

Query: 241  300
           
Sbjct: 689  562

Query: 301  352
           
Sbjct: 749  562

[Close]

BLAST of WMU44054 vs. NCBI nr
Match: gi|51477393|gb|AAU04766.1| (protein disulfide isomerase (PDI)-like protein 2 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-27
Identity = 64/118 (54.24%), Postives = 73/118 (61.86%), Query Frame = 1


Query: 1   TVSTDARKLISSHGADAYPFTXXXXXXXXXXXXXXXXXXXXGWPXXXXXXXXXXXXXVRT 60
           TVST+ARKLI+ +GA+AYPFT                    GWP             VRT
Sbjct: 450 TVSTEARKLITEYGANAYPFTEERLKQLEEQLEEEAK----GWPEKLKHELHDAHELVRT 509

Query: 61  HRATYCCDACDEMGHGWSFYCEECDFDLHPKCALKKDEGTE-EQKEGWICEGDVCRRA 120
            R +Y CDACD MG GWSFYC+ECDFDLHPKCALK +E  + E KEGWICEG VCR+A
Sbjct: 510 RRRSYICDACDGMGSGWSFYCKECDFDLHPKCALKNEEEADGEGKEGWICEGGVCRKA 563

Query: 121  180
           
Sbjct: 570  563

Query: 181  240
           
Sbjct: 630  563

Query: 241  300
           
Sbjct: 690  563

Query: 301  352
           
Sbjct: 750  563

The following BLAST results are available for this feature:

BLAST of WMU44054 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60420.1	9.0e-21	38.58	DC1 domain-containing protein	[more]
AT4G31240.1	7.4e-07	27.84	protein kinase C-like zinc finger protein	[more]

BLAST of WMU44054 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRX12_ORYSJ	4.9e-21	41.46	Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 ...	[more]
NRX1_ARATH	1.6e-19	38.58	Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1	[more]
NRX11_ORYSJ	2.1e-19	41.80	Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 ...	[more]

BLAST of WMU44054 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778707787\|ref\|XP_011656057.1\|	3.9e-34	61.21	PREDICTED: probable nucleoredoxin 1 [Cucumis sativus]	[more]
gi\|659119204\|ref\|XP_008459530.1\|	2.5e-33	61.21	PREDICTED: probable nucleoredoxin 1 [Cucumis melo]	[more]
gi\|449447547\|ref\|XP_004141529.1\|	5.5e-28	55.08	PREDICTED: probable nucleoredoxin 1 [Cucumis sativus]	[more]
gi\|659119202\|ref\|XP_008459528.1\|	2.1e-27	54.24	PREDICTED: probable nucleoredoxin 1 [Cucumis melo]	[more]
gi\|51477393\|gb\|AAU04766.1\|	2.1e-27	54.24	protein disulfide isomerase (PDI)-like protein 2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004146	DC1

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla012417	Cla012417	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
SSH0000410	SSH0000410	EST
SSH0000795	SSH0000795	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004146	DC1	PFAM	PF03107	C1_2	coord: 51..93 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 18..38 scor
None	No IPR available	GENE3D	G3DSA:3.30.60.20		coord: 54..93 score: 1.
None	No IPR available	PANTHER	PTHR13871	THIOREDOXIN	coord: 47..116 score: 3.5E-19coord: 1..21 score: 3.5
None	No IPR available	PANTHER	PTHR13871:SF7	NUCLEOREDOXIN 1-RELATED	coord: 1..21 score: 3.5E-19coord: 47..116 score: 3.5
None	No IPR available	unknown	SSF57889	Cysteine-rich domain	coord: 42..95 score: 1.53