WMU43869 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU43869
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Polyketide cyclase/dehydrase and lipid transport superfamily protein
Location	Chr7 : 20128096 .. 20129135 (+)
Sequence length	805

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGGTACCAAGACGCAACAAACCAAGACGGGTTGATTTGTACTATTCGAGCTGGTGCATTCGTGCAGTTGAATCAAAAAGGGGGATGGACAGCTAACCGCATGTGAGGTTATACTGTTTCACTATGAAGATATGGGGCATCCTTGGGAAATTGCTAAGCTCGGAGTTCGGCAGGGAATGTGGGGAACTGTTAAAAAGATTGATCCCGGGCTACGAGCATACCAAAAAGAGAGAGCATCGCATTCCACCATACCACACTGTGCCTTCATGGCTCAGATCAATACTAAGGTTAATGTAGACTACTTGAGATCTCTGGAAAACAGCTCTCATAATGATTCATTGGAGGATGAAAGCAGTTCAAAGTCATCTGGAAAACAAGTTGGGAAGAACATTCCTAAACTTCTTTTGGTTGGTGGAGCTATTGCTCTAGCCTGCACTATTGACCGTGGACTATTAACAAAGGCAGTCATATTCGGAATTGGCAGACGGTTTGCCAAGATTGGGAGGAGATTGTGAACTAATGCTAGCAGGCTCAAGTATTTTTTGCCTATACATAACAACCTGCTTATTTGCAATAGTTTTTTGTTTATATTTTTCATTCGTGTTTGTCCCGGATAGAAAGAGAATAGAATGTCTATACCACCTTGGTGGACGGGAACAAAACTCGACTTTATCGGGGCGTAGAAATGAAATGTCTTTAAGCAGCAACCAGAATGTGTAGGCTCATAAATTTGTGCATCATTCTTCTCTTCATTCTTCAGTGAAGATGATAATGGCAGATGTGGATATCAGTTGGTTTAGAAACG

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU43869 vs. TAIR10
Match: AT1G64720.1 (AT1G64720.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein)

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-44
Identity = 86/146 (58.90%), Postives = 108/146 (73.97%), Query Frame = 3


Query: 75  KKGDGQLTACEVILFHYEDMGHPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERASHSTIP 134
           K+GDG++T+CEV+LFH+EDMG PWEIAKLGVRQGMWG VKKI+PGLRAYQ+ +A+ + + 
Sbjct: 249 KRGDGEMTSCEVLLFHHEDMGIPWEIAKLGVRQGMWGAVKKIEPGLRAYQRAKAAGAGLS 308

Query: 135 HCAFMAQINTKVNVDYLRSLENSSHNXXXXXXXXXXXXGKQVGKNIPKLLLVGGAIALAC 194
             A MA INTKV+ +   +   S                K  GKNIPK+L+VGGAIALAC
Sbjct: 309 PSAIMAHINTKVSAEEFMNERGS---------IAEVTGDKPTGKNIPKILVVGGAIALAC 368

Query: 195 TIDRGLLTKAVIFGIGRRFAKIGRRL 254
           T+D+GLLTKAVIFG+ RRFA++G+R+
Sbjct: 369 TLDKGLLTKAVIFGVARRFARMGKRM 385

Query: 255  314
           
Sbjct: 429  385

Query: 315  374
           
Sbjct: 489  385

Query: 375  434
           
Sbjct: 549  385

Query: 435  494
           
Sbjct: 609  385

Query: 495  513
           
Sbjct: 669  385

HSP 2 Score: 59.7 bits (143), Expect = 3.2e-09
Identity = 26/27 (96.30%), Postives = 25/27 (92.59%), Query Frame = 1


Query: 4   VPRRNKPRRVDLYYSSWCIRAVESKRG 63
           VPR+NKPRRVDLYYSSWCIRAVESKRG
Sbjct: 225 VPRQNKPRRVDLYYSSWCIRAVESKRG 251

Query: 64   85
           
Sbjct: 285  251

[Close]

BLAST of WMU43869 vs. TAIR10
Match: AT5G54170.1 (AT5G54170.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein)

HSP 1 Score: 128.3 bits (321), Expect = 7.3e-30
Identity = 69/148 (46.62%), Postives = 93/148 (62.84%), Query Frame = 3


Query: 75  KKGDGQLTACEVILFHYEDMGHPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERASH--ST 134
           ++ DG  +ACEV+LFH+EDMG P EIAKLGV++GMWG VKK++PGLRAYQ  R S   + 
Sbjct: 289 RRDDGVTSACEVLLFHHEDMGIPREIAKLGVKRGMWGAVKKMEPGLRAYQTHRLSDGGTK 348

Query: 135 IPHCAFMAQINTKVNVDYLRSLENSSHNXXXXXXXXXXXXGKQVGKNIPKLLLVGGAIAL 194
           +   AFMAQINTK+  D+L SL N +              G +   N+ KLL++GGA+A+
Sbjct: 349 LSRSAFMAQINTKITQDHLISLSNGA--SPVTETPVTLNQGNRAA-NLKKLLIIGGAVAV 408

Query: 195 ACTIDRG-LLTKAVIFGIGRRFAKIGRR 254
            C++  G  +  A + G G+RF   GR+
Sbjct: 409 VCSLSGGAFVPPAFLLGFGKRFVNGGRK 433

Query: 255  314
           
Sbjct: 469  433

Query: 315  374
           
Sbjct: 529  433

Query: 375  434
           
Sbjct: 589  433

Query: 435  494
           
Sbjct: 649  433

Query: 495  510
           
Sbjct: 709  433

HSP 2 Score: 45.1 bits (105), Expect = 8.1e-05
Identity = 18/26 (69.23%), Postives = 20/26 (76.92%), Query Frame = 1


Query: 4   VPRRNKPRRVDLYYSSWCIRAVESKR 63
           +P  NK +RVDL+YSSWCIR VES+R
Sbjct: 265 IPPNNKQKRVDLFYSSWCIRPVESRR 290

Query: 64   82
           
Sbjct: 325  290

[Close]

BLAST of WMU43869 vs. TAIR10
Match: AT4G14500.1 (AT4G14500.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein)

HSP 1 Score: 119.0 bits (297), Expect = 4.4e-27
Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 3


Query: 75  KKGDGQLTACEVILFHYEDMGHPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERASHSTIP 134
           +KGDGQ TACEV L HYEDMG P ++AKLGVR GMWG VKK++ GLRAYQ  R S S++ 
Sbjct: 297 RKGDGQQTACEVSLVHYEDMGIPKDVAKLGVRHGMWGAVKKLNSGLRAYQSARKSDSSLS 356

Query: 135 HCAFMAQINTKVNVDYLRSLENSSHNXXXXXXXXXXXXGKQVGKNIPKLLLVGGAIALAC 194
             A MA+I TK+N+D   S E+SS +               +  +  K ++VGG +ALAC
Sbjct: 357 RIAQMARITTKLNMD---SAESSSRDEDRSRAMEYARQRDHLRMDW-KWVVVGG-VALAC 416

Query: 195 TIDRGLLTKAVIFGIGRRFAK 254
            +  G++ KA++ G G+R A+
Sbjct: 417 GLHSGIIGKALLAGAGQRLAR 432

Query: 255  314
           
Sbjct: 477  432

Query: 315  374
           
Sbjct: 537  432

Query: 375  434
           
Sbjct: 597  432

Query: 435  494
           
Sbjct: 657  432

Query: 495  498
           
Sbjct: 717  432

HSP 2 Score: 47.8 bits (112), Expect = 1.3e-05
Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 1


Query: 4   VPRRNKPRRVDLYYSSWCIRAVESKRG 63
           +P+R+KPRRV+LY+SSW IRAVES++G
Sbjct: 273 LPKRDKPRRVELYFSSWVIRAVESRKG 299

Query: 64   85
           
Sbjct: 333  299

[Close]

BLAST of WMU43869 vs. TAIR10
Match: AT3G23080.1 (AT3G23080.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 4.1e-25
Identity = 62/141 (43.97%), Postives = 84/141 (59.57%), Query Frame = 3


Query: 75  KKGDGQLTACEVILFHYEDMGHPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERASHSTIP 134
           +KGDGQ+TACEV L HYEDMG P ++AKLGVR GMWG VKK++ GLRAYQ  R   +++ 
Sbjct: 281 RKGDGQMTACEVSLVHYEDMGIPKDVAKLGVRHGMWGAVKKLNSGLRAYQSARKPGTSLS 340

Query: 135 HCAFMAQINTKVNVDYLRSLENSSHNXXXXXXXXXXXXGKQVGKNIPKLLLVGGAIALAC 194
             A MA I TK+N+D + +   +                 Q G +  K ++VGG +ALAC
Sbjct: 341 RSAQMASITTKLNMDLVET-SGAEDEERGRAVENARKQNDQFGVDW-KWIVVGG-VALAC 400

Query: 195 TIDRGLLTKAVIFGIGRRFAK 254
            +    + KA++ G G+R A+
Sbjct: 401 GLHSSAIGKALMVGAGQRLAR 418

Query: 255  314
           
Sbjct: 461  418

Query: 315  374
           
Sbjct: 521  418

Query: 375  434
           
Sbjct: 581  418

Query: 435  494
           
Sbjct: 641  418

Query: 495  498
           
Sbjct: 701  418

HSP 2 Score: 43.1 bits (100), Expect = 3.1e-04
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1


Query: 1   GVP-----RRNKPRRVDLYYSSWCIRAVESKRG 60
           GVP     +R+KPRRV+LY+SSW I AVES++G
Sbjct: 251 GVPYKALSKRDKPRRVELYFSSWIINAVESRKG 283

Query: 61   85
           
Sbjct: 311  283

[Close]

BLAST of WMU43869 vs. NCBI nr
Match: gi|449457564|ref|XP_004146518.1| (PREDICTED: uncharacterized protein LOC101209389 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 5.0e-65
Identity = 127/146 (86.99%), Postives = 129/146 (88.36%), Query Frame = 3


Query: 75  KKGDGQLTACEVILFHYEDMGHPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERASHSTIP 134
           KKGDGQLTACEVILFHYEDMG PWEIAKLGVRQGMWGTVKKIDPGLRAYQKERAS S IP
Sbjct: 287 KKGDGQLTACEVILFHYEDMGIPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERASSSDIP 346

Query: 135 HCAFMAQINTKVNVDYLRSLENSSHNXXXXXXXXXXXXGKQVGKNIPKLLLVGGAIALAC 194
           HCAFMAQINTKVNVDYLRSLENSSHN             K VGKNIPKLL+VGGAIALAC
Sbjct: 347 HCAFMAQINTKVNVDYLRSLENSSHNDSLEDQSSSKSSEKPVGKNIPKLLVVGGAIALAC 406

Query: 195 TIDRGLLTKAVIFGIGRRFAKIGRRL 254
           TIDRGLLTKAVIFGIGR+FAKIGRRL
Sbjct: 407 TIDRGLLTKAVIFGIGRQFAKIGRRL 432

Query: 255  314
           
Sbjct: 467  432

Query: 315  374
           
Sbjct: 527  432

Query: 375  434
           
Sbjct: 587  432

Query: 435  494
           
Sbjct: 647  432

Query: 495  513
           
Sbjct: 707  432

[Close]

BLAST of WMU43869 vs. NCBI nr
Match: gi|659102280|ref|XP_008452046.1| (PREDICTED: uncharacterized protein LOC103493171 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-64
Identity = 126/146 (86.30%), Postives = 129/146 (88.36%), Query Frame = 3


Query: 75  KKGDGQLTACEVILFHYEDMGHPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERASHSTIP 134
           KKGDGQLTACEVILFHYEDMG PWEIAKLGVRQGMWGTVKKIDPGLRAYQKERA +S IP
Sbjct: 287 KKGDGQLTACEVILFHYEDMGIPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERALNSAIP 346

Query: 135 HCAFMAQINTKVNVDYLRSLENSSHNXXXXXXXXXXXXGKQVGKNIPKLLLVGGAIALAC 194
           HCAFMAQINTKVNVDYLRSLENSSHN             K VGKNIPKLL+VGGAIALAC
Sbjct: 347 HCAFMAQINTKVNVDYLRSLENSSHNDSSEDQSSSKSSEKPVGKNIPKLLVVGGAIALAC 406

Query: 195 TIDRGLLTKAVIFGIGRRFAKIGRRL 254
           TIDRGLLTKAVIFGIGR+FAKIGRRL
Sbjct: 407 TIDRGLLTKAVIFGIGRQFAKIGRRL 432

Query: 255  314
           
Sbjct: 467  432

Query: 315  374
           
Sbjct: 527  432

Query: 375  434
           
Sbjct: 587  432

Query: 435  494
           
Sbjct: 647  432

Query: 495  513
           
Sbjct: 707  432

[Close]

BLAST of WMU43869 vs. NCBI nr
Match: gi|590675045|ref|XP_007039336.1| (Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao])

HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54
Identity = 107/146 (73.29%), Postives = 123/146 (84.25%), Query Frame = 3


Query: 75  KKGDGQLTACEVILFHYEDMGHPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERASHSTIP 134
           +KGDGQLTACEV+LFH+EDMG PWEIAKLGVRQGMWG VKKIDPGLRAYQKERAS + + 
Sbjct: 290 RKGDGQLTACEVLLFHHEDMGIPWEIAKLGVRQGMWGAVKKIDPGLRAYQKERASGAPLS 349

Query: 135 HCAFMAQINTKVNVDYLRSLENSSHNXXXXXXXXXXXXGKQVGKNIPKLLLVGGAIALAC 194
           HCAFMAQIN KV+ DYLRSLE++S +             K +G+NIPKLL++GGAIALAC
Sbjct: 350 HCAFMAQINAKVSADYLRSLESNSSDSSELETHNKSE--KPLGRNIPKLLVIGGAIALAC 409

Query: 195 TIDRGLLTKAVIFGIGRRFAKIGRRL 254
           ++DRGLLTKAVIFG+ RRFAKIGRRL
Sbjct: 410 SLDRGLLTKAVIFGVARRFAKIGRRL 433

Query: 255  314
           
Sbjct: 470  433

Query: 315  374
           
Sbjct: 530  433

Query: 375  434
           
Sbjct: 590  433

Query: 435  494
           
Sbjct: 650  433

Query: 495  513
           
Sbjct: 710  433

[Close]

BLAST of WMU43869 vs. NCBI nr
Match: gi|823182864|ref|XP_012488657.1| (PREDICTED: uncharacterized protein LOC105801867 [Gossypium raimondii])

HSP 1 Score: 216.9 bits (551), Expect = 4.4e-53
Identity = 104/146 (71.23%), Postives = 121/146 (82.88%), Query Frame = 3


Query: 75  KKGDGQLTACEVILFHYEDMGHPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERASHSTIP 134
           +KGDGQLTACEV+LFH+EDMG PW+IAK+GVRQGMWGTVKKIDPGLRAYQKER S +T+ 
Sbjct: 290 RKGDGQLTACEVLLFHHEDMGIPWKIAKVGVRQGMWGTVKKIDPGLRAYQKERTSGNTLS 349

Query: 135 HCAFMAQINTKVNVDYLRSLENSSHNXXXXXXXXXXXXGKQVGKNIPKLLLVGGAIALAC 194
           HCAFMAQIN+K++ DYLRS E+ S++             K  GKNIPKLL+VGGAIALAC
Sbjct: 350 HCAFMAQINSKISADYLRSFESKSNDSSELETHNSSE--KPSGKNIPKLLVVGGAIALAC 409

Query: 195 TIDRGLLTKAVIFGIGRRFAKIGRRL 254
           + DRGLLTKAVIFG+ RRFA IG+RL
Sbjct: 410 SFDRGLLTKAVIFGVARRFANIGKRL 433

Query: 255  314
           
Sbjct: 470  433

Query: 315  374
           
Sbjct: 530  433

Query: 375  434
           
Sbjct: 590  433

Query: 435  494
           
Sbjct: 650  433

Query: 495  513
           
Sbjct: 710  433

[Close]

BLAST of WMU43869 vs. NCBI nr
Match: gi|728837461|gb|KHG16904.1| (StAR-related lipid transfer 7, mitochondrial [Gossypium arboreum])

HSP 1 Score: 216.9 bits (551), Expect = 4.4e-53
Identity = 104/146 (71.23%), Postives = 121/146 (82.88%), Query Frame = 3


Query: 75  KKGDGQLTACEVILFHYEDMGHPWEIAKLGVRQGMWGTVKKIDPGLRAYQKERASHSTIP 134
           +KGDGQLTACEV+LFH+EDMG PW+IAK+GVRQGMWGTVKKIDPGLRAYQKER S +T+ 
Sbjct: 290 RKGDGQLTACEVLLFHHEDMGIPWKIAKVGVRQGMWGTVKKIDPGLRAYQKERTSGNTLS 349

Query: 135 HCAFMAQINTKVNVDYLRSLENSSHNXXXXXXXXXXXXGKQVGKNIPKLLLVGGAIALAC 194
           HCAFMAQIN+K++ DYLRS E+ S++             K  GKNIPKLL+VGGAIALAC
Sbjct: 350 HCAFMAQINSKISADYLRSFESKSNDSSELETHNSSE--KPSGKNIPKLLVVGGAIALAC 409

Query: 195 TIDRGLLTKAVIFGIGRRFAKIGRRL 254
           + DRGLLTKAVIFG+ RRFA IG+RL
Sbjct: 410 SFDRGLLTKAVIFGVARRFANIGKRL 433

Query: 255  314
           
Sbjct: 470  433

Query: 315  374
           
Sbjct: 530  433

Query: 375  434
           
Sbjct: 590  433

Query: 435  494
           
Sbjct: 650  433

Query: 495  513
           
Sbjct: 710  433

The following BLAST results are available for this feature:

BLAST of WMU43869 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64720.1	1.4e-44	58.90	Polyketide cyclase/dehydrase and lipid transport superfamily protein	[more]
AT5G54170.1	7.3e-30	46.62	Polyketide cyclase/dehydrase and lipid transport superfamily protein	[more]
AT4G14500.1	4.4e-27	47.52	Polyketide cyclase/dehydrase and lipid transport superfamily protein	[more]
AT3G23080.1	4.1e-25	43.97	Polyketide cyclase/dehydrase and lipid transport superfamily protein	[more]

BLAST of WMU43869 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457564\|ref\|XP_004146518.1\|	5.0e-65	86.99	PREDICTED: uncharacterized protein LOC101209389 [Cucumis sativus]	[more]
gi\|659102280\|ref\|XP_008452046.1\|	1.1e-64	86.30	PREDICTED: uncharacterized protein LOC103493171 [Cucumis melo]	[more]
gi\|590675045\|ref\|XP_007039336.1\|	1.8e-54	73.29	Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma ...	[more]
gi\|823182864\|ref\|XP_012488657.1\|	4.4e-53	71.23	PREDICTED: uncharacterized protein LOC105801867 [Gossypium raimondii]	[more]
gi\|728837461\|gb\|KHG16904.1\|	4.4e-53	71.23	StAR-related lipid transfer 7, mitochondrial [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR023393	START-like_dom_sf

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla014612	Cla014612	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0078093	S1_0078093	EST
S2_0092790	S2_0092790	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023393	START-like domain	GENE3D	G3DSA:3.30.530.20		coord: 2..77 score: 6.8
None	No IPR available	PANTHER	PTHR19308	PHOSPHATIDYLCHOLINE TRANSFER PROTEIN	coord: 2..170 score: 9.1
None	No IPR available	PANTHER	PTHR19308:SF12	SUBFAMILY NOT NAMED	coord: 2..170 score: 9.1