WMU43719 (transcribed_cluster) Watermelon (97103) v1

NameWMU43719
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionVacuolar protein sorting-associated protein 8 like
LocationChr5 : 246564 .. 247243 (-)
Sequence length510
The following sequences are available for this feature:

transcribed_cluster sequence

CATACCCACAAGAAACAGATTTATTGGAGCTCCCGTACACTCTTCAGCAAATACCACGGTTTGAGATTCTGACTAACTTACAGAAAAACCAAAAGGTAATAGACATAGAAAATGTGCCTCAACTGAGGCTTGCACCACCAGCCGTCTACCATGACAAGGTCACAAAAGGATATCATCTTCTAGTGGGAGAAAGCAGGGGTGGAATAGAAAAAGTAGAAAAGCTAAATAAGAGCAGGCAACTGACGGAGGTAAAAGTGAAGAGACCGTCCTCCCTTCGATTCCCTTTAAAAGCGAGTCTATTTGGAAAAGCGAAGACCAATTCTTGACAGAGTACGGAAGCGACTATTTAATTATAAACCAATGTGATAAGGTGCTTTTGGGTAGCTATAACTCTGCGTCTCTCCCTCTCAAATTCAGAAGGGAAGAATGACATTTTGCATCTGTAAATACAAATACGAAGGTAGTTAGTTAATAACGTATTTAGTTAGAGTAAATGGTATGAGCTATAAA
BLAST of WMU43719 vs. TAIR10
Match: AT4G00800.1 (AT4G00800.1 transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3

Query: 3    YPQETDLLELPYTLQQIPRFEILTNLQKNQKVIDIENVPQLRLAPPAVYHDKVTKGYHLL 62
            Y  E ++ +  +  QQ+ RFEILTNLQK+Q+++ IE++P+LRLAPPAVYH+KV++     
Sbjct: 1819 YSHENEMSDHSHN-QQLSRFEILTNLQKDQRLVQIESLPRLRLAPPAVYHEKVSRLSGFT 1878

Query: 63   VGESRGGIEKVEKLNKSRQ 122
             GES G   K  K  + ++
Sbjct: 1879 PGESSGKDTKPVKTGQGKK 1896

Query: 123  182
            
Sbjct: 1939 1896

Query: 183  240
            
Sbjct: 1999 1896

BLAST of WMU43719 vs. NCBI nr
Match: gi|659074757|ref|XP_008437780.1| (PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Cucumis melo])

HSP 1 Score: 196.8 bits (499), Expect = 3.0e-47
Identity = 101/108 (93.52%), Postives = 103/108 (95.37%), Query Frame = 3

Query: 3    YPQETDLLELPYTLQQIPRFEILTNLQKNQKVIDIENVPQLRLAPPAVYHDKVTKGYHLL 62
            YPQETD+LELPYTLQQIPRFEILTNLQKNQ+VIDIENVPQLRLAPPAVYHDKVTKGYHLL
Sbjct: 1858 YPQETDILELPYTLQQIPRFEILTNLQKNQRVIDIENVPQLRLAPPAVYHDKVTKGYHLL 1917

Query: 63   VGESRGGIEKVEKLNKSRQLTEVKVKRPSSLRFPLKASLFGKAK-TNS 122
            VGES  G EKVEKLNKSRQLTEVKVKRPSSLRFPLKASLFGK K TNS
Sbjct: 1918 VGESSSGREKVEKLNKSRQLTEVKVKRPSSLRFPLKASLFGKEKMTNS 1965

Query: 123  182
            
Sbjct: 1978 1965

Query: 183  242
            
Sbjct: 2038 1965

Query: 243  302
            
Sbjct: 2098 1965

Query: 303  324
            
Sbjct: 2158 1965

BLAST of WMU43719 vs. NCBI nr
Match: gi|778676625|ref|XP_011650623.1| (PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 6.7e-47
Identity = 101/108 (93.52%), Postives = 102/108 (94.44%), Query Frame = 3

Query: 3    YPQETDLLELPYTLQQIPRFEILTNLQKNQKVIDIENVPQLRLAPPAVYHDKVTKGYHLL 62
            YPQETDLLELPYTLQQIPRFEILTNLQKNQ+VIDIENVPQLRLAPPAVYHDKVTKGYHLL
Sbjct: 1853 YPQETDLLELPYTLQQIPRFEILTNLQKNQRVIDIENVPQLRLAPPAVYHDKVTKGYHLL 1912

Query: 63   VGESRGGIEKVEKLNKSRQLTEVKVKRPSSLRFPLKASLFGKAK-TNS 122
            VGES GG EKVEKLNKSRQLT VKVKRPSSLRFPLK SLFGK K TNS
Sbjct: 1913 VGESSGGREKVEKLNKSRQLTGVKVKRPSSLRFPLKTSLFGKEKMTNS 1960

Query: 123  182
            
Sbjct: 1973 1960

Query: 183  242
            
Sbjct: 2033 1960

Query: 243  302
            
Sbjct: 2093 1960

Query: 303  324
            
Sbjct: 2153 1960

BLAST of WMU43719 vs. NCBI nr
Match: gi|296089008|emb|CBI38711.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 135.6 bits (340), Expect = 8.2e-29
Identity = 67/106 (63.21%), Postives = 85/106 (80.19%), Query Frame = 3

Query: 3    YPQETDLLELPYTLQQIPRFEILTNLQKNQKVIDIENVPQLRLAPPAVYHDKVTKGYHLL 62
            +P E D+LE PY LQQIPRFEIL NLQK+++ I IEN+PQLRLAPPAVYH+KV KG   L
Sbjct: 1828 HPHENDVLENPYGLQQIPRFEILNNLQKDKRAIQIENLPQLRLAPPAVYHEKVAKGIDFL 1887

Query: 63   VGESRGGIEKVEKLNKSRQLTEVKVKRPSSLRFPLKASLFGKAKTN 122
             GES   + K+EK +K+RQL E+K ++ SS+RFPLK+S+FGK KT+
Sbjct: 1888 TGESSSALAKIEKPSKTRQLRELK-EKGSSIRFPLKSSIFGKEKTS 1932

Query: 123  182
            
Sbjct: 1948 1932

Query: 183  242
            
Sbjct: 2008 1932

Query: 243  302
            
Sbjct: 2068 1932

Query: 303  321
            
Sbjct: 2128 1932

BLAST of WMU43719 vs. NCBI nr
Match: gi|731420761|ref|XP_002267626.3| (PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X1 [Vitis vinifera])

HSP 1 Score: 135.6 bits (340), Expect = 8.2e-29
Identity = 67/106 (63.21%), Postives = 85/106 (80.19%), Query Frame = 3

Query: 3    YPQETDLLELPYTLQQIPRFEILTNLQKNQKVIDIENVPQLRLAPPAVYHDKVTKGYHLL 62
            +P E D+LE PY LQQIPRFEIL NLQK+++ I IEN+PQLRLAPPAVYH+KV KG   L
Sbjct: 1882 HPHENDVLENPYGLQQIPRFEILNNLQKDKRAIQIENLPQLRLAPPAVYHEKVAKGIDFL 1941

Query: 63   VGESRGGIEKVEKLNKSRQLTEVKVKRPSSLRFPLKASLFGKAKTN 122
             GES   + K+EK +K+RQL E+K ++ SS+RFPLK+S+FGK KT+
Sbjct: 1942 TGESSSALAKIEKPSKTRQLRELK-EKGSSIRFPLKSSIFGKEKTS 1986

Query: 123  182
            
Sbjct: 2002 1986

Query: 183  242
            
Sbjct: 2062 1986

Query: 243  302
            
Sbjct: 2122 1986

Query: 303  321
            
Sbjct: 2182 1986

BLAST of WMU43719 vs. NCBI nr
Match: gi|743790622|ref|XP_011039285.1| (PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X1 [Populus euphratica])

HSP 1 Score: 125.9 bits (315), Expect = 6.5e-26
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 3

Query: 3    YPQETDLLELPYTLQQIPRFEILTNLQKNQKVIDIENVPQLRLAPPAVYHDKVTKGYHLL 62
            +P E DLLE  Y LQQI RFEIL++LQK++K++ IE++PQLRLAPPAVYH+KV KG  LL
Sbjct: 1824 HPHE-DLLENSYGLQQISRFEILSSLQKDKKLVQIESMPQLRLAPPAVYHEKVKKGPDLL 1883

Query: 63   VGESRGGIEKVEKLNKSRQLTEVKVKRPSSLRFPLKASLFGKAKTN 122
             GES   + +VEK  K RQL E+K+K  SSLRFPLK+S+FGK KTN
Sbjct: 1884 TGESSSALAEVEKPGKRRQLRELKLK-GSSLRFPLKSSIFGKEKTN 1927

Query: 123  182
            
Sbjct: 1944 1927

Query: 183  242
            
Sbjct: 2004 1927

Query: 243  302
            
Sbjct: 2064 1927

Query: 303  321
            
Sbjct: 2124 1927

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT4G00800.18.7e-1345.57 transducin family protein / WD-40 repeat family protein[more]
Match NameE-valueIdentityDescription
gi|659074757|ref|XP_008437780.1|3.0e-4793.52PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Cucumis melo][more]
gi|778676625|ref|XP_011650623.1|6.7e-4793.52PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Cucumis sativu... [more]
gi|296089008|emb|CBI38711.3|8.2e-2963.21unnamed protein product [Vitis vinifera][more]
gi|731420761|ref|XP_002267626.3|8.2e-2963.21PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X1 [Vit... [more]
gi|743790622|ref|XP_011039285.1|6.5e-2664.15PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X1 [Pop... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021084Cla021084gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0149838S2_0149838EST
WMN59A09WMN59A09EST