WMU43489 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU43489
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 219056 .. 219568 (+)
Sequence length	384

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACCTAGGCCCTGCCGTTGACAGAGGAATGGGTGTTGTTCCGCCTGTGTGGGACTTGATCACCGAGGTGGAGGAGCATGCCTTGTAGCTTTCTTCATTCACCTCGTCCACTGAGTGACTCCCACCATAATTGAACACTAATGTGTCGCCAACCCTAAAAGTCTGCCCTGCAGCCCAGGTGTCGTAGTTCACCCCCTGGTTCCACCCAGAGTTGCCGCCAACGATGATATCTGCTCCATAAACCGCCCGCACCGCTACCAAAACAACCAATACAGCAGCCGCTTTCATCGCCATTTCTGCAACACACAAATACAATTATGATAGAAAATTACTCACAAACTTTTTCTTTTTGGAAACAGATTATCAGTTGTTACCTTAGCACAGAG

Library


Library category	ESTs
watermelon fusarium SSH library	3

Homology

[Close]

BLAST of WMU43489 vs. TAIR10
Match: AT1G22480.1 (AT1G22480.1 Cupredoxin superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-15
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = -3


Query: 2   WNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSVIKSHTGGTTPIP 61
           W+ G +Y     G+TF VGDT+VFNYG  H+VDEV+E  YK+C+  + I S + GTT I 
Sbjct: 27  WSLGTDYTPLTTGKTFSVGDTIVFNYGAGHTVDEVSENDYKSCTLGNSITSDSSGTTTIA 86

Query: 62  LSTAGPR 121
           L+T GPR
Sbjct: 87  LTTTGPR 93

Query: 122  181
           
Sbjct: 147  93

Query: 182  203
           
Sbjct: 207  93

[Close]

BLAST of WMU43489 vs. TAIR10
Match: AT1G72230.1 (AT1G72230.1 Cupredoxin superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-15
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = -3


Query: 5   WNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSVIKSHTGGTTPIP 64
           W+ G +Y + A G++F VGDT+VFNYG  H+VDEV+E  YK+C+  + I S + GTT I 
Sbjct: 31  WSLGKDYSSLATGKSFAVGDTIVFNYGAGHTVDEVSESDYKSCTLGNAISSDSSGTTSIA 90

Query: 65  LSTAGP 124
           L T GP
Sbjct: 91  LKTPGP 96

Query: 125  184
           
Sbjct: 151  96

Query: 185  203
           
Sbjct: 211  96

[Close]

BLAST of WMU43489 vs. TAIR10
Match: AT2G44790.1 (AT2G44790.1 uclacyanin 2)

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-14
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = -3


Query: 8   WNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSVIKSHTGGTTPIP 67
           W  GV+Y  WA G+TFRVGD L F YG SH+VD V++  Y  C ++S  ++H+ G T I 
Sbjct: 36  WTTGVDYSGWATGKTFRVGDILEFKYGSSHTVDVVDKAGYDGCDASSSTENHSDGDTKID 95

Query: 68  LSTAG 127
           L T G
Sbjct: 96  LKTVG 100

Query: 128  187
           
Sbjct: 156  100

Query: 188  203
           
Sbjct: 216  100

[Close]

BLAST of WMU43489 vs. TAIR10
Match: AT3G60270.1 (AT3G60270.1 Cupredoxin superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = -3


Query: 8   VGGNSGWNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSVIKSHTG 67
           VG N GW  GV Y +W + +TFRVGDTL F YG SHSV  VN+  Y  C ++   +S + 
Sbjct: 28  VGDNDGWTIGVEYTSWVSEKTFRVGDTLEFKYGPSHSVAVVNKADYDGCETSRPTQSFSD 87

Query: 68  GTTPIPLSTAG 127
           G T I L+  G
Sbjct: 88  GDTKIDLTKVG 98

Query: 128  187
           
Sbjct: 148  98

Query: 188  221
           
Sbjct: 208  98

[Close]

BLAST of WMU43489 vs. TAIR10
Match: AT3G60280.1 (AT3G60280.1 uclacyanin 3)

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-13
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = -3


Query: 8   YGADIIVGGNSGWNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSV 67
           + A   VG  SGW   ++Y  W  G+TFRVGDTL F YG SHSV  V++  Y  C S+  
Sbjct: 20  FAATFKVGDISGWTSNLDYTVWLTGKTFRVGDTLEFVYGLSHSVSVVDKAGYDNCDSSGA 79

Query: 68  IKSHTGGTTPIPLSTAG 127
            ++   G T I L+T G
Sbjct: 80  TQNFADGDTKIDLTTVG 96

Query: 128  187
           
Sbjct: 140  96

Query: 188  239
           
Sbjct: 200  96

[Close]

BLAST of WMU43489 vs. Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-15
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = -3


Query: 8   VGGNSGWNQGVNYDTWAAGQTFRVGDTLVFNYG-GSHSVDEVNEESYKACSSTSVIKSHT 67
           VG  SGW  G +Y TWA+ +TF VGD+LVFNYG G+H+VDEV E  YK+C+S + I + +
Sbjct: 29  VGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDS 88

Query: 68  GGTTPIPLSTAG 127
            G T IPL  AG
Sbjct: 89  TGATTIPLKKAG 100

Query: 128  187
           
Sbjct: 149  100

Query: 188  221
           
Sbjct: 209  100

[Close]

BLAST of WMU43489 vs. Swiss-Prot
Match: BCB2_ARATH (Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-12
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = -3


Query: 8   WNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSVIKSHTGGTTPIP 67
           W  GV+Y  WA G+TFRVGD L F YG SH+VD V++  Y  C ++S  ++H+ G T I 
Sbjct: 36  WTTGVDYSGWATGKTFRVGDILEFKYGSSHTVDVVDKAGYDGCDASSSTENHSDGDTKID 95

Query: 68  LSTAG 127
           L T G
Sbjct: 96  LKTVG 100

Query: 128  187
           
Sbjct: 156  100

Query: 188  203
           
Sbjct: 216  100

[Close]

BLAST of WMU43489 vs. Swiss-Prot
Match: BCB3_ARATH (Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.8e-12
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = -3


Query: 8   YGADIIVGGNSGWNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSV 67
           + A   VG  SGW   ++Y  W  G+TFRVGDTL F YG SHSV  V++  Y  C S+  
Sbjct: 20  FAATFKVGDISGWTSNLDYTVWLTGKTFRVGDTLEFVYGLSHSVSVVDKAGYDNCDSSGA 79

Query: 68  IKSHTGGTTPIPLSTAG 127
            ++   G T I L+T G
Sbjct: 80  TQNFADGDTKIDLTTVG 96

Query: 128  187
           
Sbjct: 140  96

Query: 188  239
           
Sbjct: 200  96

[Close]

BLAST of WMU43489 vs. Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = -3


Query: 8   VGGNSGWNQGVNYD--TWAAGQTFRVGDTLVFNYGGS-HSVDEVNEESYKACSSTSVIKS 67
           VG ++GW   V YD   WA+   F VGD+L+FNY    H+V +V++E +K+C+S+S   S
Sbjct: 6   VGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAAS 65

Query: 68  HTGGTTPIPLSTAG 127
           +T G   IPL   G
Sbjct: 66  YTSGADSIPLKRPG 79

Query: 128  187
           
Sbjct: 126  79

Query: 188  221
           
Sbjct: 186  79

[Close]

BLAST of WMU43489 vs. Swiss-Prot
Match: STEL_TOXVR (Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-08
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = -3


Query: 2   VGGNSGWNQ----GVNYD-TWAAGQTFRVGDTLVFNYGGS-HSVDEVNEESYKACSSTSV 61
           VG ++GW       V+YD  WA+ +TF +GD LVF Y    H+VD+V +++Y++C+ T+ 
Sbjct: 5   VGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDTTP 64

Query: 62  IKSHTGGTTPIPLSTAGPR 121
           I S+  G   I L T G +
Sbjct: 65  IASYNTGBBRINLKTVGQK 83

Query: 122  181
           
Sbjct: 125  83

Query: 182  221
           
Sbjct: 185  83

[Close]

BLAST of WMU43489 vs. NCBI nr
Match: gi|449431954|ref|XP_004133765.1| (PREDICTED: uclacyanin-2 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 5.6e-30
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = -3


Query: 2   YGADIIVGGNSGWNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSV 61
           YGADIIVGGNSGW+QGV+YDTWAAGQ F VGD LVFNYGGSHSVDEV E  Y ACSS+SV
Sbjct: 19  YGADIIVGGNSGWSQGVDYDTWAAGQKFNVGDALVFNYGGSHSVDEVKEADYTACSSSSV 78

Query: 62  IKSHTGGTTPIPLSTAGPR 121
           IKSHTGGTT IPLS  GPR
Sbjct: 79  IKSHTGGTTSIPLSAVGPR 97

Query: 122  181
           
Sbjct: 139  97

Query: 182  239
           
Sbjct: 199  97

[Close]

BLAST of WMU43489 vs. NCBI nr
Match: gi|659074745|ref|XP_008437773.1| (PREDICTED: basic blue protein [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = -3


Query: 2   YGADIIVGGNSGWNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSV 61
           YGADIIVGG+SGWNQG NYDTWA  Q F VGDTLVF+YGGSHSVDEVNE SY ACSS+SV
Sbjct: 19  YGADIIVGGSSGWNQGFNYDTWATQQKFTVGDTLVFDYGGSHSVDEVNEASYTACSSSSV 78

Query: 62  IKSHTGGTTPIPLSTAGPR 121
           IKSHTGGTT IPLS  GPR
Sbjct: 79  IKSHTGGTTSIPLSAVGPR 97

Query: 122  181
           
Sbjct: 139  97

Query: 182  239
           
Sbjct: 199  97

[Close]

BLAST of WMU43489 vs. NCBI nr
Match: gi|702321396|ref|XP_010052796.1| (PREDICTED: mavicyanin-like [Eucalyptus grandis])

HSP 1 Score: 99.4 bits (246), Expect = 4.9e-18
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = -3


Query: 5   YGADIIVGGNSGWNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSV 64
           +GA + VG +SGW QG NY TWAA QTF VGD+LVF Y   HSVD+V+++ Y  C++ + 
Sbjct: 22  HGATLTVGDSSGWTQGTNYATWAASQTFNVGDSLVFTYTTLHSVDQVSKDDYDNCNTGNA 81

Query: 65  IKSHTGGTTPIPLSTAGP 124
           IKS+T G+T IPLSTAGP
Sbjct: 82  IKSYTSGSTTIPLSTAGP 99

Query: 125  184
           
Sbjct: 142  99

Query: 185  239
           
Sbjct: 202  99

[Close]

BLAST of WMU43489 vs. NCBI nr
Match: gi|1021030175|gb|KZM87960.1| (hypothetical protein DCAR_025061 [Daucus carota subsp. sativus])

HSP 1 Score: 99.0 bits (245), Expect = 6.4e-18
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = -3


Query: 5   YGADIIVGGNSGWNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSV 64
           YG D  VGG+ GW+QGV++ TWAAG+ F VGD LVF YG SHSVDEV+   Y +CSS++ 
Sbjct: 19  YGVDHTVGGSGGWDQGVDFTTWAAGEKFVVGDNLVFTYGSSHSVDEVSASDYSSCSSSNP 78

Query: 65  IKSHTGGTTPIPLSTAGP 124
           IKS+TGG   + L+  GP
Sbjct: 79  IKSYTGGKNTVALTKTGP 96

Query: 125  184
           
Sbjct: 139  96

Query: 185  239
           
Sbjct: 199  96

[Close]

BLAST of WMU43489 vs. NCBI nr
Match: gi|593264564|ref|XP_007134460.1| (hypothetical protein PHAVU_010G049200g [Phaseolus vulgaris])

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = -3


Query: 2   YGADIIVGGNSGWNQGVNYDTWAAGQTFRVGDTLVFNYGGSHSVDEVNEESYKACSSTSV 61
           +G D  VG +SGW+ GV+Y TWA+G+TF+VGD LVFNY  SH VDE++E  Y +CSS++ 
Sbjct: 20  FGVDYTVGDSSGWSSGVDYSTWASGKTFKVGDNLVFNYDSSHEVDEIDESGYSSCSSSNT 79

Query: 62  IKSHTGGTTPIPLSTAGPR 121
           IK++  G + I LST G R
Sbjct: 80  IKNYKDGNSKIALSTTGKR 98

Query: 122  181
           
Sbjct: 140  98

Query: 182  239
           
Sbjct: 200  98

The following BLAST results are available for this feature:

BLAST of WMU43489 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22480.1	1.8e-15	52.24	Cupredoxin superfamily protein	[more]
AT1G72230.1	4.1e-15	51.52	Cupredoxin superfamily protein	[more]
AT2G44790.1	5.9e-14	49.23	uclacyanin 2	[more]
AT3G60270.1	1.3e-13	47.89	Cupredoxin superfamily protein	[more]
AT3G60280.1	3.9e-13	44.16	uclacyanin 3	[more]

BLAST of WMU43489 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BCP_PEA	1.7e-15	55.56	Blue copper protein OS=Pisum sativum PE=2 SV=1	[more]
BCB2_ARATH	1.1e-12	49.23	Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1	[more]
BCB3_ARATH	6.8e-12	44.16	Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1	[more]
MAVI_CUCPE	1.1e-09	43.24	Mavicyanin OS=Cucurbita pepo PE=1 SV=1	[more]
STEL_TOXVR	4.6e-08	39.24	Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1	[more]

BLAST of WMU43489 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431954\|ref\|XP_004133765.1\|	5.6e-30	83.54	PREDICTED: uclacyanin-2 [Cucumis sativus]	[more]
gi\|659074745\|ref\|XP_008437773.1\|	1.2e-29	83.54	PREDICTED: basic blue protein [Cucumis melo]	[more]
gi\|702321396\|ref\|XP_010052796.1\|	4.9e-18	58.97	PREDICTED: mavicyanin-like [Eucalyptus grandis]	[more]
gi\|1021030175\|gb\|KZM87960.1\|	6.4e-18	57.69	hypothetical protein DCAR_025061 [Daucus carota subsp. sativus]	[more]
gi\|593264564\|ref\|XP_007134460.1\|	1.4e-17	54.43	hypothetical protein PHAVU_010G049200g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003245	Phytocyanin_dom
IPR008972	Cupredoxin

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0009055	electron carrier activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021079	Cla021079	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
SSH0002453	SSH0002453	EST
SSH0002891	SSH0002891	EST
SSH0003728	SSH0003728	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PRODOM	PD003122		coord: 53..97 score: 9.
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 31..96 score: 1.3
IPR003245	Phytocyanin domain	PROFILE	PS51485	PHYTOCYANIN	coord: 21..98 score: 3
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 21..96 score: 8.3
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 20..96 score: 1.7
None	No IPR available	PANTHER	PTHR33021	FAMILY NOT NAMED	coord: 1..97 score: 2.3
None	No IPR available	PANTHER	PTHR33021:SF35	SUBFAMILY NOT NAMED	coord: 1..97 score: 2.3